mRNA_Ecto-sp13_S_contig153.3985.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig153.3985.1
Unique NamemRNA_Ecto-sp13_S_contig153.3985.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig153.3985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig153contigEcto-sp13_S_contig153:31365..31903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size539
Hectar predicted targeting categorymitochondrion
Exons1
Cds size372
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462813.3769011-UTR-Ecto-sp13_S_contig153:31364..314681681462813.3769011-UTR-Ecto-sp13_S_contig153:31364..31468Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig153 31365..31468 +
1681462813.4025958-UTR-Ecto-sp13_S_contig153:31840..319031681462813.4025958-UTR-Ecto-sp13_S_contig153:31840..31903Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig153 31841..31903 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462813.3886523-CDS-Ecto-sp13_S_contig153:31468..318401681462813.3886523-CDS-Ecto-sp13_S_contig153:31468..31840Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig153 31469..31840 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig153.3985.1prot_Ecto-sp13_S_contig153.3985.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig153 31469..31840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig153.3985.1

>prot_Ecto-sp13_S_contig153.3985.1 ID=prot_Ecto-sp13_S_contig153.3985.1|Name=mRNA_Ecto-sp13_S_contig153.3985.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
MLQRHASRVILSMIWFNISGKRHTCLHRKPLGFRRRMVHRLSRKTTWTPT
SHVHEQGDIRQTNTSTHTTLTAPGERTHTTKTLPSTKEITSMYADAHQQN
NVYRPPPTRPPTLSSTIYPKTGA*
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mRNA from alignment at Ecto-sp13_S_contig153:31365..31903+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig153.3985.1 ID=mRNA_Ecto-sp13_S_contig153.3985.1|Name=mRNA_Ecto-sp13_S_contig153.3985.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=539bp|location=Sequence derived from alignment at Ecto-sp13_S_contig153:31365..31903+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACAGCGCACGGGTGCAGATGTCATCGGAATAGGACCCTGTCGTGGTCGC
CTGAGGCCGACAGCATGAACATCCGTATATTTTGTTGTATGACACCTCGT
GTTTATGCTGCAGCGTCATGCCTCACGTGTCATCCTCTCAATGATCTGGT
TTAATATATCGGGCAAACGTCATACATGTTTACACAGAAAGCCATTGGGA
TTCCGAAGACGAATGGTCCACCGTCTCTCGCGCAAAACAACGTGGACCCC
TACCTCTCACGTTCACGAACAGGGAGACATAAGACAAACGAATACTTCAA
CTCACACGACCCTAACTGCACCAGGTGAACGAACACACACGACGAAGACA
CTTCCCTCGACAAAAGAAATAACGAGTATGTACGCTGACGCACACCAGCA
AAACAACGTCTATCGTCCTCCACCCACTCGTCCACCCACCCTTTCCTCAA
CCATCTACCCGAAAACAGGTGCATGAGCAACCAAACAACTTTGGTGAACA
AGCACAAACCTCAACAACAGACCACCGAGACCATCCGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig153:31365..31903+

>mRNA_Ecto-sp13_S_contig153.3985.1 ID=mRNA_Ecto-sp13_S_contig153.3985.1|Name=mRNA_Ecto-sp13_S_contig153.3985.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig153:31365..31903+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCAGCGTCATGCCTCACGTGTCATCCTCTCAATGATCTGGTTTAA
TATATCGGGCAAACGTCATACATGTTTACACAGAAAGCCATTGGGATTCC
GAAGACGAATGGTCCACCGTCTCTCGCGCAAAACAACGTGGACCCCTACC
TCTCACGTTCACGAACAGGGAGACATAAGACAAACGAATACTTCAACTCA
CACGACCCTAACTGCACCAGGTGAACGAACACACACGACGAAGACACTTC
CCTCGACAAAAGAAATAACGAGTATGTACGCTGACGCACACCAGCAAAAC
AACGTCTATCGTCCTCCACCCACTCGTCCACCCACCCTTTCCTCAACCAT
CTACCCGAAAACAGGTGCATGA
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