mRNA_Ecto-sp13_S_contig15275.3966.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15275.3966.1
Unique NamemRNA_Ecto-sp13_S_contig15275.3966.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15275.3966.1 vs. uniprot
Match: D8LT20_ECTSI (Predicted unusual protein kinase (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT20_ECTSI)

HSP 1 Score: 441 bits (1135), Expect = 1.330e-153
Identity = 257/278 (92.45%), Postives = 259/278 (93.17%), Query Frame = 1
Query:    1 GVALTGDPDYRIVMEAYPFVTRKIISDDSPALQRALRDILYSEDGKFLAKRLSVLLSYATGVVAADSAVXXXXXXXXXXXXFVDFDTLPSTAASLSQTLQFLLAEEARPLRAALVGEASNAADLVLRRGTRQAVVRAKDLLRPPPPXXXXXXXXXXXPFPVPESVVDALSPKLTVEEDIFLASLEELAYALAGIEQGTVSDDPLATVRQLLQAGSDGSGGAGELVEFVRTLPGDSEKTEAIFDVGSEVVQNLAGRASKRFNGLLSGASGGSSGSDAGR 834
            GVALTGDPDYRIVMEAYPFVTRKIISDDSPALQRALRDILYSEDGKFLAKRLSVLLSYATGVVAADSAV            FVDFDTLPSTAASLSQTLQFLLAEEARPLRAALVGEASNAADLVLRRGTRQAVVRAKDLLRPPPPXXXXXXXXXXXPFPVPESVVDALSPKLTVEEDIFLASLEELAYALAGIEQGTVSDDPLAT+RQLLQAGSDGSGGAGELVEFVRTLPGDSEKTEAIFDVGSEVVQNLA RAS+RFNGLLSG SG     DAGR
Sbjct:   91 GVALTGDPDYRIVMEAYPFVTRKIISDDSPALQRALRDILYSEDGKFLAKRLSVLLSYATGVVAADSAV------------FVDFDTLPSTAASLSQTLQFLLAEEARPLRAALVGEASNAADLVLRRGTRQAVVRAKDLLRPPPPXXXXXXXXXXXPFPVPESVVDALSPKLTVEEDIFLASLEELAYALAGIEQGTVSDDPLATIRQLLQAGSDGSGGAGELVEFVRTLPGDSEKTEAIFDVGSEVVQNLADRASERFNGLLSGGSGXXXXRDAGR 356          
BLAST of mRNA_Ecto-sp13_S_contig15275.3966.1 vs. uniprot
Match: A0A6H5KBP7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBP7_9PHAE)

HSP 1 Score: 440 bits (1131), Expect = 1.070e-145
Identity = 254/269 (94.42%), Postives = 256/269 (95.17%), Query Frame = 1
Query:    1 GVALTGDPDYRIVMEAYPFVTRKIISDDSPALQRALRDILYSEDGKFLAKRLSVLLSYATGVVAADSAVXXXXXXXXXXXXFVDFDTLPSTAASLSQTLQFLLAEEARPLRAALVGEASNAADLVLRRGTRQAVVRAKDLLRPPPPXXXXXXXXXXXPFPVPESVVDALSPKLTVEEDIFLASLEELAYALAGIEQGTVSDDPLATVRQLLQAGSDGSGGAGELVEFVRTLPGDSEKTEAIFDVGSEVVQNLAGRASKRFNGLLSGASG 807
            GVALTGDPDYRIVMEAYPFVTRKIISDDSPALQRALRDILYSEDGKFLAKRLSVLLSYATGVVAADSAV            FVDFDTLPSTAASLSQTLQFLLAEEARPLRAALVGEASNAADLVLRRGTRQAVVRAKDLLRPPPPXXXXXXXXXXXPFPVPESVVDALSPKLTVEEDIFLASLEELAYALAGIEQGTVSD+PLAT+RQLLQAGSDGSGGAGELVEFVRTLPGDSEKTEAIFDVGSEVVQNLA RASKRFNGLLSGASG
Sbjct:  641 GVALTGDPDYRIVMEAYPFVTRKIISDDSPALQRALRDILYSEDGKFLAKRLSVLLSYATGVVAADSAV------------FVDFDTLPSTAASLSQTLQFLLAEEARPLRAALVGEASNAADLVLRRGTRQAVVRAKDLLRPPPPXXXXXXXXXXXPFPVPESVVDALSPKLTVEEDIFLASLEELAYALAGIEQGTVSDNPLATIRQLLQAGSDGSGGAGELVEFVRTLPGDSEKTEAIFDVGSEVVQNLADRASKRFNGLLSGASG 897          
BLAST of mRNA_Ecto-sp13_S_contig15275.3966.1 vs. uniprot
Match: A0A835YL56_9STRA (Calcium-activated chloride channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL56_9STRA)

HSP 1 Score: 177 bits (450), Expect = 9.020e-47
Identity = 116/271 (42.80%), Postives = 163/271 (60.15%), Query Frame = 1
Query:    1 GVALTGDPDYRIVMEAYPFVTRKIISDDSPALQRALRDILYS---EDGK----FLAKRLSVLLSYATGVVAADSAVXXXXXXXXXXXXFVDFDTLPSTAASLSQTLQFLLAEEARPLRAALVGEASNAADLVLRRGTRQAVVRAKDLLRPPPPXXXXXXXXXXXPFPVPESVVDALSPKLTVEEDIFLASLEELAYALAGIEQGTVS----DDPLATVRQLLQAGSDGSGGAGELVEFVRTLPGDSEKTEAIFDVGSEVVQNLAGRASKRF 780
            G+ALTGDPDY+IV+EAYP+VTR+I +DDSP L+RAL+DILYS    DG         RL+ LL+YA G   A +              FVDFD++PST A L++ + FLL + AR LR ALVGE ++A DLVLR+ TR+ + R + LL+PPP            P PVP+ ++DALSP+L++EE++F  SL +L  AL G++  + +      P   +R+LL   S  +  A EL+EF RT+  DS +    FD   + + N   R  +R+
Sbjct:  525 GIALTGDPDYKIVLEAYPYVTRRITTDDSPLLRRALQDILYSGSTADGTAAPALSITRLANLLTYAMGNTDAAAG---------GGPVFVDFDSVPSTGAKLNEVMGFLLGDSARSLRKALVGEIASATDLVLRQTTRRGLSRLEALLQPPP--LPFLPRLPSLPLPVPKRLLDALSPQLSIEEEVFAKSLTDLGLALLGVDADSAAALDNGRPDVLLRKLL---STDNSSAQELLEFARTVQADSPQ----FDAHGKRILNPLERTERRY 777          
BLAST of mRNA_Ecto-sp13_S_contig15275.3966.1 vs. uniprot
Match: A0A5B8MWJ3_9CHLO (Putative UbiB-like protein kinase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MWJ3_9CHLO)

HSP 1 Score: 134 bits (338), Expect = 6.230e-32
Identity = 100/276 (36.23%), Postives = 149/276 (53.99%), Query Frame = 1
Query:    1 GVALTGDPDYRIVMEAYPFVTRKIISDDSPALQRALRDILYSEDGKFLAKRLSVLLSYATGVVAADSAVXXXXXXXXXXXXFVDFDTLPSTAASLSQTLQFLLAEEARPLRAALVGEASNAADLVLRRGTR----QAVVRAKDL-LRPPP-----PXXXXXXXXXXXPFPVPESVVDA-LSPKLTVEEDIFLASLEELAYALAGIEQGTVSDDPLATVRQLLQAGS-DGSGGAGELVEFVRTLPGDSEKTEAIFDVGSEVVQNLAGRASKRFNGLL 792
            G+AL G+P+YRIVME+YPFV+RK++SDD PA Q+AL +ILYS+D    ++RL+VLL+ A G+VA   +             FVD D +P  + +  +++QF   EEA  LR  L  E +NAAD +LR+  R    Q  + A  L   PPP     P           P  +P S   A L+P LT +E+I+  S+ +LA  L+G++   +  DP  TVR L+  G  DG+    +L+     L G+       F   +E++  L+ R + R  G++
Sbjct:  557 GIALIGNPNYRIVMESYPFVSRKLLSDDRPAFQQALTEILYSKDQTLKSQRLAVLLNSAQGIVAETDS-------------FVDLDAIPENSMNTVESVQFFFGEEAFGLRNTLQPEITNAADFLLRQAIRRVSTQVEIAAPRLPFLPPPESVPVPFVTFGANGMPQPALLPLSKATAILAPPLTQDEEIYALSMLDLANDLSGLDVKGLFMDPFETVRALVSGGRLDGALFGNDLLSL--ELQGEDRARAEAF--ATEILNQLSERYTARLTGVV 815          
BLAST of mRNA_Ecto-sp13_S_contig15275.3966.1 vs. uniprot
Match: K8EHT4_9CHLO (Protein kinase domain-containing protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EHT4_9CHLO)

HSP 1 Score: 133 bits (335), Expect = 1.660e-31
Identity = 93/220 (42.27%), Postives = 122/220 (55.45%), Query Frame = 1
Query:    1 GVALTGDPDYRIVMEAYPFVTRKIISDDSPALQRALRDILY---SEDGKFL-AKRLSVLLSYATGVVAADSAVXXXXXXXXXXXXFVDFDTLPSTAASLSQTLQFLLAEEARPLRAALVGEASNAADLVLRRGTRQAVVRAKDLL-RPP------PPXXXXXXXXXXXP----------FPVPESVVDALSPKLTVEEDIFLASLEELAYALAGIEQGTV 597
            G+AL G+PDY++VMEAYPFV RK++SDD PA QRAL+++LY   S  G  L  +RL+V+L+ A G+VA  S              FVD +TLP  AASL Q+L+++L   A  LR  LV EA  AAD++ R+  R+ V RA  L+ RPP      PP           P          F  P  V+D  +PKLT EE++F  SL +L   L G    TV
Sbjct:  595 GIALLGNPDYKLVMEAYPFVARKLLSDDRPAAQRALQEVLYASTSAGGSILKGERLAVMLNSAMGIVAETSDT------------FVDLETLPEDAASLKQSLKYVLTPRAESLRKVLVKEAIAAADVLARQALRKTVTRAFALIPRPPSWLPFQPPNPEDIEGPILLPSRGNSTPVPAFASPRRVLDLTAPKLTREEELFAISLGDLVGGLVGKNAATV 802          
BLAST of mRNA_Ecto-sp13_S_contig15275.3966.1 vs. uniprot
Match: A0A7S3VU42_DUNTE (Hypothetical protein (Fragment) n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VU42_DUNTE)

HSP 1 Score: 128 bits (322), Expect = 8.500e-30
Identity = 97/267 (36.33%), Postives = 141/267 (52.81%), Query Frame = 1
Query:    1 GVALTGDPDYRIVMEAYPFVTRKIISDDSPALQRALRDILYSEDGKFLAKRLSVLLSYATGVVAADSAVXXXXXXXXXXXXFVDFDTLPSTAASLSQTLQFLLAEEARPLRAALVGEASNAADLVLRRGTRQAVVRAKDLLRPPP-PXXXXXXXXXXXPFPVP-------ESVVDALSPKLTVEEDIFLASLEELAYALAGIEQGTVSDDPLATVRQLLQAGSDGSGGAGELVEFVRTLPGDSEKTEAIFDVGSEVVQNLAGRASKR 777
            G+AL+GDP Y++V +AYPFV RK++ +DS +    L+DIL+  DGK    RL  LL+   G VA                 F+D D +P   AS+S+ + FLL+ EAR LR  LV E SN  DL LR   R+A      LL PP  P  XXXXXXXXXP  +P       +  V+ L+P L   E ++L SL EL   L G+    +     ++++ +LQ  ++ S    E+ + + T+ G+    E +  +  +VV  LA +  +R
Sbjct:  526 GIALSGDPQYQMVAQAYPFVVRKVLRNDSNSSMALLQDILFDNDGKVKPTRLGALLNAGLGYVA----------DAKQSAGFIDIDAVPDDGASVSEVVAFLLSPEARELRPLLVREISNGLDLFLRDRFRKAYALLPGLLAPPRLPFLXXXXXXXXXPVFLPGIGLIAADEAVEKLAPPLNSAEQVYLVSLMELTANLLGVSVAELESPTASSIQGMLQMATNPSEQVQEIGDALNTMSGNRANLEVVQAIVLDVVNTLASKQEER 782          
BLAST of mRNA_Ecto-sp13_S_contig15275.3966.1 vs. uniprot
Match: A0A7S1ENC3_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S1ENC3_9CHLO)

HSP 1 Score: 126 bits (317), Expect = 8.630e-30
Identity = 88/222 (39.64%), Postives = 120/222 (54.05%), Query Frame = 1
Query:    1 GVALTGDPDYRIVMEAYPFVTRKIISDDSPALQRALRDILYSED---GKFL-AKRLSVLLSYATGVVAADSAVXXXXXXXXXXXXFVDFDTLPSTAASLSQTLQFLLAEEARPLRAALVGEASNAADLVLRRGTRQAVVRAKDLLRPPP---------PXXXXXXXXXXXP----------FPVPESVVDALSPKLTVEEDIFLASLEELAYALAGIEQGTV 597
            G+AL G+PDY++VMEAYPFV RK++ +D PA QRAL+++LY+     G  L  +RL+V+L+ A G+VA    V            FVD +TLP  AASL Q+L++L+  EA  LR  L  EA  AADL+LR+  R+ V R    L  PP         P           P          F  P  V++  +PKL+ EE++F  SL +LA  L G +  TV
Sbjct:  146 GIALLGNPDYKLVMEAYPFVARKLLREDRPAAQRALQEVLYASTQGGGSILQGQRLAVMLNSAMGIVARSEDV------------FVDLETLPEDAASLEQSLKYLMQPEAASLRNLLEREAETAADLLLRQSIRKGVTRIFAQLPKPPAWLPFASSLPNPQDISGPVLLPVSGSSTPVPTFASPAQVLELAAPKLSREEELFAISLGDLAAGLVGKDAATV 355          
BLAST of mRNA_Ecto-sp13_S_contig15275.3966.1 vs. uniprot
Match: C1MV80_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MV80_MICPC)

HSP 1 Score: 124 bits (311), Expect = 2.450e-28
Identity = 86/227 (37.89%), Postives = 121/227 (53.30%), Query Frame = 1
Query:    1 GVALTGDPDYRIVMEAYPFVTRKIISDDSPALQRALRDILYSED---GKFL-AKRLSVLLSYATGVVAADSAVXXXXXXXXXXXXFVDFDTLPSTAASLSQTLQFLLAEEARPLRAALVGEASNAADLVLRRGTRQAVVRAKDLLRPPP------PXXXXXXXXXXXPFPV------------------PESVVDALSPKLTVEEDIFLASLEELAYALAGIEQGTV 597
            G+AL G+PDYR+VMEAYPFV RK++ +D PA QRAL+++LY+     G  L  +RL+V+L+ A GVVA D +             FVD DT+P  + SL   +++LL+E A  LR  L  EA  AAD++LR+G R++  R    L  PP      P           P P+                  P  V+DA++P+LT EE++F  SL +LA    G +   V
Sbjct:  440 GIALIGNPDYRLVMEAYPFVARKLLREDRPAAQRALQEVLYASTVGGGNILQGQRLAVMLNSAMGVVARDQS----------EGAFVDLDTIPEDSISLETGVRYLLSERAESLRKVLEREAIGAADVLLRQGARKSGGRIIAALPQPPSLPFDLPFVGKLPKPEDLPGPILVPRSAASGLPPTPALASPNEVLDAIAPRLTREEELFAISLTDLARGSLGDDAAVV 656          
BLAST of mRNA_Ecto-sp13_S_contig15275.3966.1 vs. uniprot
Match: A0A250XDH8_9CHLO (Protein kinase domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XDH8_9CHLO)

HSP 1 Score: 124 bits (311), Expect = 2.480e-28
Identity = 85/220 (38.64%), Postives = 115/220 (52.27%), Query Frame = 1
Query:    1 GVALTGDPDYRIVMEAYPFVTRKIISDDSPALQRALRDILYSEDGKFLAKRLSVLLSYATGVVAADSAVXXXXXXXXXXXXFVDFDTLPSTAASLSQTLQFLLAEEARPLRAALVGEASNAADLVLRRGTRQAVVRAKDLLRPPPPXXXXXXXXXXXPF--------PVPESVVDALSPKLTVEEDIFLASLEELAYALAGIEQGTVSDDPLATVRQLLQ 636
            G+AL GDPDY++V +AYPFV RKI+ +DS      LRDILY  +GK    R+S LL+ A G V++ S              FVDFD++P   A++ + LQFLL+ EA+ LR  LV +  +  DL+LR   R+        L P  P           P         PVPE++ D L+P L  EE +FL SL EL+ +L G+      D     V QLL+
Sbjct:  522 GIALAGDPDYQMVTQAYPFVVRKILRNDSTGTGGLLRDILYDNEGKVKPTRMSALLNAALGYVSSKSE------------GFVDFDSIPDEGATVQEVLQFLLSPEAKDLRPLLVSQLVSGLDLLLRDRVRKLYNVTLPALVPRLPFFGAIPTPPLPPLLVPGLGFMPVPEAL-DLLAPPLAPEEGVFLNSLTELSASLTGLSLSDFEDPEPQRVIQLLR 728          
BLAST of mRNA_Ecto-sp13_S_contig15275.3966.1 vs. uniprot
Match: L1IPB2_GUITC (Protein kinase domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IPB2_GUITC)

HSP 1 Score: 123 bits (309), Expect = 4.280e-28
Identity = 94/279 (33.69%), Postives = 138/279 (49.46%), Query Frame = 1
Query:    1 GVALTGDPDYRIVMEAYPFVTRKIISDDSPALQRALRDILYSEDGKFLAKRLSVLLSYATGVVAADSAVXXXXXXXXXXXXFVDFDTLPSTAASLSQTLQFLLAEEARPLRAALVGEASNAADLVLRRGTRQAVVRAKDLLRPPP------------PXXXXXXXXXXXPFPV---PESVVDALSPKLTVEEDIFLASLEELAYALAGIEQGTVSD-----DPLATVRQLLQAGSDGSGGAGELVEFVRTLPGDSEKTEAIFDVGSEVVQNLAGRASKR 777
            GVAL GDP Y +VMEAYPFV RK++ +D P +QRAL+++LY+  G     RLSVLL+ A GVVA                 F+DFD++P     L + +++LL+++AR LR  L  E  NAAD++LR+  R+      + L  PP            P           P PV   P+ +++ ++PKLT EE+++  SL +L  +  G +  T+       DP A  R LL   S G             LPG S     + D   +++  L G + +R
Sbjct:  436 GVALIGDPSYGLVMEAYPFVARKLLREDRPEVQRALQEVLYAGGG-LKTSRLSVLLNGALGVVARTQG-----------GAFIDFDSIPEEGVPLEEAIKYLLSDKARSLRNILADEVENAADVLLRQSLRKGFSAFLNNLPRPPFISSFLPSPETVPTMFLLPTASGTPQPVLRPPQELLEVVAPKLTREEELYAISLVDLIKSALGEDAATLVAGDALVDPRAASRLLLSVVSTGK------------LPGWSSLPAPLADALKQLLTVLNGGSVRR 690          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15275.3966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT20_ECTSI1.330e-15392.45Predicted unusual protein kinase (ISS) n=1 Tax=Ect... [more]
A0A6H5KBP7_9PHAE1.070e-14594.42Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A835YL56_9STRA9.020e-4742.80Calcium-activated chloride channel-domain-containi... [more]
A0A5B8MWJ3_9CHLO6.230e-3236.23Putative UbiB-like protein kinase n=1 Tax=Chloropi... [more]
K8EHT4_9CHLO1.660e-3142.27Protein kinase domain-containing protein n=1 Tax=B... [more]
A0A7S3VU42_DUNTE8.500e-3036.33Hypothetical protein (Fragment) n=1 Tax=Dunaliella... [more]
A0A7S1ENC3_9CHLO8.630e-3039.64Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]
C1MV80_MICPC2.450e-2837.89Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]
A0A250XDH8_9CHLO2.480e-2838.64Protein kinase domain-containing protein n=1 Tax=C... [more]
L1IPB2_GUITC4.280e-2833.69Protein kinase domain-containing protein n=2 Tax=G... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15275contigEcto-sp13_S_contig15275:636..4204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score444.5
Seed ortholog evalue3.6e-122
Seed eggNOG ortholog2880.D8LT20
Model size837
KEGG koko:K08869
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.regulation of tocopherol cyclase activity
EggNOG OGsCOG0661@1,KOG1235@2759
Ec32 ortholog descriptionPredicted unusual protein kinase (ISS)
Ec32 orthologEc-08_003840.1
Cds size837
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15275.3966.1prot_Ecto-sp13_S_contig15275.3966.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15275 636..4204 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462812.302469-CDS-Ecto-sp13_S_contig15275:635..7431681462812.302469-CDS-Ecto-sp13_S_contig15275:635..743Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15275 636..743 -
1681462812.3130224-CDS-Ecto-sp13_S_contig15275:1672..17341681462812.3130224-CDS-Ecto-sp13_S_contig15275:1672..1734Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15275 1673..1734 -
1681462812.321609-CDS-Ecto-sp13_S_contig15275:2194..23301681462812.321609-CDS-Ecto-sp13_S_contig15275:2194..2330Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15275 2195..2330 -
1681462812.3308294-CDS-Ecto-sp13_S_contig15275:3020..32001681462812.3308294-CDS-Ecto-sp13_S_contig15275:3020..3200Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15275 3021..3200 -
1681462812.3421733-CDS-Ecto-sp13_S_contig15275:3664..38091681462812.3421733-CDS-Ecto-sp13_S_contig15275:3664..3809Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15275 3665..3809 -
1681462812.3534703-CDS-Ecto-sp13_S_contig15275:3848..39291681462812.3534703-CDS-Ecto-sp13_S_contig15275:3848..3929Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15275 3849..3929 -
1681462812.3679974-CDS-Ecto-sp13_S_contig15275:4079..42041681462812.3679974-CDS-Ecto-sp13_S_contig15275:4079..4204Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15275 4080..4204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15275.3966.1

>prot_Ecto-sp13_S_contig15275.3966.1 ID=prot_Ecto-sp13_S_contig15275.3966.1|Name=mRNA_Ecto-sp13_S_contig15275.3966.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=279bp
GVALTGDPDYRIVMEAYPFVTRKIISDDSPALQRALRDILYSEDGKFLAK
RLSVLLSYATGVVAADSAVYATGVVAADSAVFVDFDTLPSTAASLSQTLQ
FLLAEEARPLRAALVGEASNAADLVLRRGTRQAVVRAKDLLRPPPPPLPF
LPRLPSLPFPVPESVVDALSPKLTVEEDIFLASLEELAYALAGIEQGTVS
DDPLATVRQLLQAGSDGSGGAGELVEFVRTLPGDSEKTEAIFDVGSEVVQ
NLAGRASKRFNGLLSGASGGSSGSDAGR*
back to top

mRNA from alignment at Ecto-sp13_S_contig15275:636..4204-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15275.3966.1 ID=mRNA_Ecto-sp13_S_contig15275.3966.1|Name=mRNA_Ecto-sp13_S_contig15275.3966.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3569bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15275:636..4204- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGTGGCGCTGACGGGAGACCCTGACTACCGCATCGTGATGGAGGCGTA CCCTTTCGTTACCCGCAAGATCATCTCCGACGACTCTCCGGCCCTGCAGA GGGCCCTGAGGGACATTCTGTACAGGTTAGTAATGTTGTTGTTGTTGTCG TTGTTGTTGATGATGTTGTTGTTGTTGCTCTCCCCCCCCGCATCTCTCTC GCTCCCTTCCCCTCTCTCCTCCTCCCTCCCCCCTTTCGTTCTCTCTCACC TCTCCCCCCCCCGCCACTACAACAGCGAGGACGGCAAGTTCCTGGCGAAG CGGCTGTCGGTCCTCCTGAGCTACGCCACGGGCGTCGTCGCCGCAGACTC GGCCGTGTTCGTGGACTTCGATACGCTGCCCTCCATCCTCCTGAGCTACG CCACGGGCGTCGTCGCCGCAGACTCGGCCGTGTTCGTGGACTTCGACACG CTGCCCTCCACGGCCGCCTCCCTGAGCCAGACGCTGCAGTTCCTGCTCGC GGAGGAGGCCCGGCCGCTCAGGGCGGCTCTCGTGGGAGAGGTGCGTTTTT TTTTGCTAAGAAGCTGTGTGTGTGTAGTTTTTTCTGTTTTTTGTACGAAG TATTGCTGTGCGTGGGTCTGTTCGGAGAAGAGGGACATGTTCGGATTCGT TTTCGGTTTTGTGTGTTCGAGTTTGTCTTGGTTTTGTTCTGTTTCCCGTG GCGAATCGCCGGTCCTCCCGCTGCTCCCGATCATACAGAAACTGCCGTAG GTGCCAGCCCAACCGCCATCCAGCCTATCCTGGCACGCCATCATTTAGAT TGTCAAGGCGTTCATGCGTGTGAGGGTCATGAAAAGCACATACCACGCTC CTCCTCATTGTAGGGATACGAGGTCAATGGCCTAACAATTACGGCATGCA CGCCTATGAGAGTACCTCCCCCCCCCTTCTTTTCCGCCGTGACCCCCCCC CCCCTACCGCCTCCTCCGCCCCGCCAAATATGCCTCCCGCCCCACCGACG ACAGGCGTCGAACGCGGCCGACCTGGTGCTGAGGAGGGGCACGAGACAGG CTGTGGTGAGGGCCAAGGATCTCCTCCGCCCGCCCCCGCCCCCTCTCCCC TTCCTGCCGCGGCTTCCTTCGCTGCCTTTCCCGGTGCCGGAGTCTGTTGT CGACGCCCTCAGCCCCAAGCTCACGGTGGAGGAGGTGTGTGACAACGGTG GCCTTAGAAGTCTTATGAGCCGTTGTATACACAGCGATTGTTGGTTCCAA ATTTTCCAAATTTTCATCAAATCAGTAGACCGTTGAACCTCGATTTGCGT CCGAGGAAAAAGTTGGAACGAGTTTGGAAGTCGAAATTTGGAGATTTGGA CATATGGAAATCAATTTGGAAGCAAAATCGCTGTGTACGAAACGGCATTT GTACGAGACGACACACGAAAAGCGAATATTCGGGTAGCTGTGTGCCTATG TTTCATTCGTTGATGCAGGTTCAGCGTGTTTCTGCTGTACATTTTTCACC GACTGACGTGAGAGGCAATTTTTGTACAAAAGCCACGTCTTCTATGTGGG GTGGGGTTGGTTTGCGAGCCGTTTCTTTTGTTGGTATGATTGATTGAGTG GTCGCCCGGTGATTCCAAGTTGGTGACCTCGCAGCCTCCTGACGTTTCGC CACATCCATGCATGCATGAGCGCGAGTGTTGACGCAAGTCACTCGTACTC TGGGAGTTTGCCTTCCTCGCATCATCTTTCACAGAACTTCGCAAATTGAA TGTATTATGTCGTGCGTGGTGGATGTAGAGGATCCGAGTTCTCCAAGATT GACGAGGGAAAGGAACCGCTGAATCCTTCAGACCATGGAATTGACCGCTT CTCTTTTTTTTCTCTTTTCTTCAGGATATTTTCCTCGCGAGCCTGGAAGA GTTGGCGTACGCGTTGGCGGGGATCGAACAGGGGACGGTAAGCGACGATC CTCTGGCGACGGTACGACAGCTCCTGCAGGCGGGGAGCGACGGAAGCGGC GGCGCAGGGGGTGAGATGTGGGCAAGAGGAGCGGGGGCGGGGTGGTTGGA CGGGAGGGGTGGGTCAGGCTAGTCGGCCTAGGGAAGTAGTCACAGTCTTC AAGTCACATAGGGCCCCACGCATCCCTGAAGGACGGGAAGGGGACACACG ATTGGAAAGTTCGCTCGGGTGCAAGCTACACACACCGTACAAATCTCCCC CCCCGCGCCTGCCCTCTCTGTCTCGCGATTTAGTGTTCCGTGTGTGTGTG CAGACTTCACCTGAGCGTCAAGAAAGTGACGGAAAAACTCACCGTTAGTA GACTACCATATTGAATATTGCCGCCCTTTCTTACACTCGTTCCCTCCGAC ACGACTAAACGAACGAACGCACCGGCCCCCCTCCCGTTCACCCCCCTCTC TACACGATGGGTTACTCTGCGGATCCCCCCCCCTGCCCGATTCCGCGTGG ACCTTGTATGAAACTTCCAGAACTGGTGGAATTCGTGCGAACGCTTCCGG GGGACTCCGAGAAGACGGAGGCAATTTTCGATGTGAGTCTTCACTCTTTT GGGGGAGGGCAGGAGGGGGAGTGCGTACTGTAGGTATAGGTTTGTGTGAG TCATCCCCGCTGATTGTGTGCGTGTCGACGTTTTGTGTTGCGGCTTTTTT GGGTGTTTTTTTTTCTGGATGAACCGGCCGCTGGGTCACACTCGACGAGA GAAGGTACTTGGAGGTGGGTGGGGCTGGTAGGGGGGGGTGGTTGATTATC CCCCACCCCATGGCGATGCGTCGTCATTCTCATGCCGTGGTGTTAACCCG AGTGACAATGTGTTGACTCCGTCAATGAAAGTCTGTCAATTAGTTCTAGA GCAGGGGGTGTACTCGTGCGTTCTTTCGCCGCGGGTCATACCACACAAGA GACTGGCGAAAAAATCGCGCGCCCACGGTGGAATAAAGCACAACGTGGGA GCTCTCGTTTCTACTCGTCTTTTCCCCCCCACCTTTTTATGCGCCTCCCT GCTGCTGCTCCCCCTTTGGAATGGCAAACCAACACAGGGGGTGTACTCGT GCGTTCTTTCGCCGCGGGTCATACCACACAAGAGACTGGCGAAAAAATCG CGCGCCCACGGTGGAATAAAGCACAACGTGGGAGCTCTCGTTTCTACTCG TCTTTTCCCCCCCACTTTTTTATGCGCCTCCCTGCTGCTGCTCCCCCTTT GGAATGGCAAACCAACACTCGTCGTCAGCAAGTATCATCCATTTCCGTGT ACTGCCTGGAGACAAGTTGCTTGTGTTCCCCCCTGCTCCTCCGTACCTGT ACATGCGGCATTTCCATCGCCCCCGGGTGCGTTCACGCGCAAGCTCAACG TTCTGAACCCAGTCATGATGCTTCGTGACAGAAATCAATCACGCTCACCC TCGATCTCGCCCGCGCCGACTTTGCCACACGACGTGTACGATGTTTGTTG CGCCCAATCAGGTTGGGTCGGAGGTCGTGCAAAACCTGGCTGGCAGAGCC AGCAAGAGATTCAACGGCCTGCTGTCTGGTGCCAGCGGCGGGTCCAGCGG CAGTGACGCTGGGCGATGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15275:636..4204-

>mRNA_Ecto-sp13_S_contig15275.3966.1 ID=mRNA_Ecto-sp13_S_contig15275.3966.1|Name=mRNA_Ecto-sp13_S_contig15275.3966.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=837bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15275:636..4204- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGTGGCGCTGACGGGAGACCCTGACTACCGCATCGTGATGGAGGCGTA
CCCTTTCGTTACCCGCAAGATCATCTCCGACGACTCTCCGGCCCTGCAGA
GGGCCCTGAGGGACATTCTGTACAGCGAGGACGGCAAGTTCCTGGCGAAG
CGGCTGTCGGTCCTCCTGAGCTACGCCACGGGCGTCGTCGCCGCAGACTC
GGCCGTCTACGCCACGGGCGTCGTCGCCGCAGACTCGGCCGTGTTCGTGG
ACTTCGACACGCTGCCCTCCACGGCCGCCTCCCTGAGCCAGACGCTGCAG
TTCCTGCTCGCGGAGGAGGCCCGGCCGCTCAGGGCGGCTCTCGTGGGAGA
GGCGTCGAACGCGGCCGACCTGGTGCTGAGGAGGGGCACGAGACAGGCTG
TGGTGAGGGCCAAGGATCTCCTCCGCCCGCCCCCGCCCCCTCTCCCCTTC
CTGCCGCGGCTTCCTTCGCTGCCTTTCCCGGTGCCGGAGTCTGTTGTCGA
CGCCCTCAGCCCCAAGCTCACGGTGGAGGAGGATATTTTCCTCGCGAGCC
TGGAAGAGTTGGCGTACGCGTTGGCGGGGATCGAACAGGGGACGGTAAGC
GACGATCCTCTGGCGACGGTACGACAGCTCCTGCAGGCGGGGAGCGACGG
AAGCGGCGGCGCAGGGGAACTGGTGGAATTCGTGCGAACGCTTCCGGGGG
ACTCCGAGAAGACGGAGGCAATTTTCGATGTTGGGTCGGAGGTCGTGCAA
AACCTGGCTGGCAGAGCCAGCAAGAGATTCAACGGCCTGCTGTCTGGTGC
CAGCGGCGGGTCCAGCGGCAGTGACGCTGGGCGATGA
back to top