mRNA_Ecto-sp13_S_contig15226.3937.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15226.3937.1
Unique NamemRNA_Ecto-sp13_S_contig15226.3937.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15226.3937.1 vs. uniprot
Match: D8LFA1_ECTSI (BIG2, ArfGEF protein of the BIG/GBF family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA1_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 2.870e-29
Identity = 98/102 (96.08%), Postives = 99/102 (97.06%), Query Frame = 2 
Query:    2 HLRLCARQLAEGGVDVALQRPLPEATISNTGQLPPEVLGAVRADYGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCKSRRTARNDAVGHLTLDLDSLD 307
            HLRLCARQLAEGGVDVALQRPLPEATISNTGQLPPEVLGAVRADYGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +SRR ARNDAVGHLTLDLDSLD
Sbjct: 1518 HLRLCARQLAEGGVDVALQRPLPEATISNTGQLPPEVLGAVRADYGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-RSRRAARNDAVGHLTLDLDSLD 1618
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15226.3937.1 vs. uniprot
Match: A0A6H5KJ76_9PHAE (DUF1981 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ76_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.160e-22
Identity = 86/105 (81.90%), Postives = 87/105 (82.86%), Query Frame = 2 
Query:    2 HLRLCARQLAEGGVDVALQ---RPLPEATISNTGQLPPEVLGAVRADYGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCKSRRTARNDAVGHLTLDLDSLD 307
            HLRLCARQLAEGGVDVALQ   RPLPE TISNTGQLPPEVLGAVRAD G  XXXXXXXXXXXXXXXXXXXXXXXX        + RR ARNDAVGHL LDLDSLD
Sbjct:  178 HLRLCARQLAEGGVDVALQPNKRPLPETTISNTGQLPPEVLGAVRADRGXXXXXXXXXXXXXXXXXXXXXXXXXXR-------RFRRAARNDAVGHLALDLDSLD 275
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15226.3937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFA1_ECTSI2.870e-2996.08BIG2, ArfGEF protein of the BIG/GBF family n=1 Tax... [more]
A0A6H5KJ76_9PHAE2.160e-2281.90DUF1981 domain-containing protein n=1 Tax=Ectocarp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15226contigEcto-sp13_S_contig15226:1103..1804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size310
Hectar predicted targeting categoryother localisation
Exons2
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462810.2232494-CDS-Ecto-sp13_S_contig15226:1102..13531681462810.2232494-CDS-Ecto-sp13_S_contig15226:1102..1353Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15226 1103..1353 -
1681462810.2366858-CDS-Ecto-sp13_S_contig15226:1746..18041681462810.2366858-CDS-Ecto-sp13_S_contig15226:1746..1804Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15226 1747..1804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15226.3937.1prot_Ecto-sp13_S_contig15226.3937.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15226 1103..1804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15226.3937.1

>prot_Ecto-sp13_S_contig15226.3937.1 ID=prot_Ecto-sp13_S_contig15226.3937.1|Name=mRNA_Ecto-sp13_S_contig15226.3937.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
APAAVRQAVSRGRRRRRSSATAPRGHDLQHGTASPGGAGRRESRLRRRRP
RRRPQQRRGLLRKPQHRRRRRRRRRRRRWLQVPQDGTERRRRPPYPRPGQ
PRP
back to top

mRNA from alignment at Ecto-sp13_S_contig15226:1103..1804-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15226.3937.1 ID=mRNA_Ecto-sp13_S_contig15226.3937.1|Name=mRNA_Ecto-sp13_S_contig15226.3937.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=702bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15226:1103..1804- (Ectocarpus species13 EcNAP12_S_4_19m)
GCACCTGCGGCTGTGCGCCAGGCAGTTAGCCGAGGGCGGCGTCGACGTCG
CTCTTCAGGTGAGACTGGAAACCTGACGCACGATGGCGGACGGCAGTCAG
CCGTTTTATGATACTATTTCAAGAGGTACTTGACGCTTTGCGTGATGCCA
GCGCACGACCTTGTATTATCAGTGTGTAGCCCAACAAGATACGGGGTGCG
GAAAAAGTCTGACGATGTTGTTGAAGCTGACTAGTAAACTAGAGGTTTCC
GATGCTTGGCTGCTTCTGTGGAACCCGCGCAGCAGTGTATTGATTGCTGC
TCCCCAAGCGAAAATTCCGAACTTGGTGCTCGCCCAAGAAGAAGAAGAAG
CACAGCACTAATTAGGGATGTCAATGACACCAGTCCCGTCAGTAGCCAGC
CCACTCACCCCCCTCCACCCCCCACCCTGCTACCGTTACCCGTCTCAACA
GCGACCGCTCCCCGAGGCCACGATCTCCAACACGGGACAGCTTCCCCCGG
AGGTGCTGGGCGCCGTGAGAGCCGACTACGGCGGCGGCGGCCGCGGCGGC
GGCCCCAGCAGCGACGCGGGCTGCTCCGAAAACCGCAACACAGACGTCGA
CGACGACGACGACGACGACGACGACGATGGCTGCAAGTCCCGCAGGACGG
CACGGAACGACGCCGTCGGCCACCTTACCCTAGACCTGGACAGCCTCGAC
CC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15226:1103..1804-

>mRNA_Ecto-sp13_S_contig15226.3937.1 ID=mRNA_Ecto-sp13_S_contig15226.3937.1|Name=mRNA_Ecto-sp13_S_contig15226.3937.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15226:1103..1804- (Ectocarpus species13 EcNAP12_S_4_19m)
GCACCTGCGGCTGTGCGCCAGGCAGTTAGCCGAGGGCGGCGTCGACGTCG
CTCTTCAGCGACCGCTCCCCGAGGCCACGATCTCCAACACGGGACAGCTT
CCCCCGGAGGTGCTGGGCGCCGTGAGAGCCGACTACGGCGGCGGCGGCCG
CGGCGGCGGCCCCAGCAGCGACGCGGGCTGCTCCGAAAACCGCAACACAG
ACGTCGACGACGACGACGACGACGACGACGACGATGGCTGCAAGTCCCGC
AGGACGGCACGGAACGACGCCGTCGGCCACCTTACCCTAGACCTGGACAG
CCTCGACCC
back to top