mRNA_Ecto-sp13_S_contig15193.3913.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15193.3913.1
Unique NamemRNA_Ecto-sp13_S_contig15193.3913.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15193.3913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15193contigEcto-sp13_S_contig15193:75..3915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size292
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-13_002210.1
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462808.353382-CDS-Ecto-sp13_S_contig15193:74..1541681462808.353382-CDS-Ecto-sp13_S_contig15193:74..154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15193 75..154 -
1681462808.3730972-CDS-Ecto-sp13_S_contig15193:3703..39111681462808.3730972-CDS-Ecto-sp13_S_contig15193:3703..3911Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15193 3704..3911 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462808.3848472-UTR-Ecto-sp13_S_contig15193:3911..39151681462808.3848472-UTR-Ecto-sp13_S_contig15193:3911..3915Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15193 3912..3915 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15193.3913.1prot_Ecto-sp13_S_contig15193.3913.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15193 75..3911 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15193.3913.1

>prot_Ecto-sp13_S_contig15193.3913.1 ID=prot_Ecto-sp13_S_contig15193.3913.1|Name=mRNA_Ecto-sp13_S_contig15193.3913.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=96bp
MFPSGGPLTRTNLERTTHRHPFARATTTTLCRDAGGRRQGSCRSRGEGEG
THLRALATKGPGRAARALICDSTSPRTRFGGPRGREIQGGGAGGGG
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mRNA from alignment at Ecto-sp13_S_contig15193:75..3915-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15193.3913.1 ID=mRNA_Ecto-sp13_S_contig15193.3913.1|Name=mRNA_Ecto-sp13_S_contig15193.3913.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3841bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15193:75..3915- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATGTTTCCATCTGGAGGACCCCTGACGCGAACGAACTTGGAACGAA
CAACACATCGACATCCCTTCGCTCGGGCTACTACGACTACGCTGTGCAGG
GACGCAGGAGGGCGAAGGCAGGGATCGTGTCGGAGTAGGGGAGAGGGAGA
GGGCACACACTTACGCGCGCTCGCGACTAAGGGCCCCGGCCGGGCAGCGC
GCGCCCTGATCTGTGGTGAGAACAAACGACTCATCGTCTCTTTAGCCGCG
CCCTTGTGGTGTCTGTGCACGCTCGCCCAGTGATGAATGATGTGTCCGGC
TTTTTCCCTCACACATAACCCCAAAACCTGCTTCTGCGATGATGATGTTT
GCCGAGAGGAATAGTGTTTCTTGTATGAGAGACTGCTGCTGTGTCTTGTT
GTGCAGAGAGACGTGCCCCCCGTGTATGGGGGACAAGGAGTGCTTCTGTC
TATGCGTGTGTCGATGGCAGGTTTTTCGGTTTGATGAAGATGATGACCAG
GGAAAAGAAGCCGTTTGGGCATAAAGTTCTGCTGCCTGTGATGGGCGAGG
AACCATCGGTAGAACGGCGCATGAATATGCAAGTTATATTTTTTTTATGT
AGCAAAATCAGAGAGGCGCCCTTTGCTGCTGTATTTGCGAGAGACCAGAA
CCAAAAAGGATGTGTGTATTGAACATCGTTTCCCCGCACTGGCGTGTGCT
TCACAGAGGGAGAAACCAAAGGGTCAATGTCTCCAGCAGCATTTTGCTCG
TTGCGAACTTTCGTGCAAAGTGAAGTTCTGCATGCAGCACAGAGATCTAG
ATAAAATAGAGAACGCACCAGTTGCATTCGTCATGTTCTGCGAAAAATCG
AGCACCTCCCACGCCGCAGATGGTGGATACGTTTACATTTCTTGGGGGGG
GCTCTTGGGAAGAACAGGCTACCATGTATGCATCTAGCAGAGAGAACCAT
CAACTGCACCACAGGAGCGATGTGCTTTGTTTCTTTTTAGTACACTTCAA
CAGCGGGTCGATTCTGTTGTACATGGGAGAAAAAATAACCAAGTCACCAT
CCATTACTCGGCTTTTTCTTGCTCTATGGACGTACAGAAACACGAAAGTC
AAGTCGGAATCCTCAAGAGGTTGACGCCCCCCAATTATCAGCAGCGGCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCCCTTTCCTTCTTTTTCTG
CTCGTGTGTGTGTGGTTGTGCGTATGGTTCCCGCTGATTTGCTTGAAGGC
ACACGCGGTCGTGTAGCATGCACGTGTTTTAGGATGCATGCAACAAGATG
ATTGAAGGTCGGTGAATTATGGGTCCCACCACCCGCCGCAATACCGCCGC
AGCAGTAGCAGCAGGTTGTTGTTGTTCCCCGCCAGCCAGCCAGCCCGGCC
ATTTTCTACGCATTTTCTTCTGTGTCGTTGAGACCGCCGTCGGCGCGGGT
AGATGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCTCCTGCCAACGCCCTACTCCGCCCACAGACTGAGCACA
CCGCTCCACACCATTGTTTCCCAGGGGTCGGCTGTTGTACCTTTGGACGG
CATATTTTGTGGCGACAACGGCCCAGCTTTTAGGTGCAATTTAGGTATCT
GCAACTCCGGCTGTTGTCTCTTCTAGACGGCATAATGGCATAATTACCAG
CTCTCCGATATTTTACGTCGACAGCGGCACGTTCTTGGTTGGAATTGCTT
GCTTCTAATTACAGCACCGATACCTGCGACGCACAGCAGTACGTACGTAT
ACACGAGCGGTATACCGTGTTCTGTCTTCTGGTTAACTATCGTAGTAAGC
ACGAAAGGTAGGTGTAGATCAGCACGGAGACATCAAGGCTTGTACATGCT
GTGCAGAGATCGGAATTGTTGTTACTGCTGTGAAGGAAACAACAACAACC
CAACTTCCCTCAAGTCTTCTCTCTAATTCAAGCTGCAAAAAAACAGACAG
CTCGGGGAATCGCACGAACGCAGGGATGCTCTGCTGCTTGAATTCATTGC
CAACTTGTCCTAGACCCTCATCCATGGATAGAGATTGCTTTATACTGTTG
TGTCATGAAAGAAAAATGGAGACAACAGCTGGCTTTTTTCATGCACATGG
ACAGCATCCCCAAACGAGAACTTGTGCTAAAGATGACTTCGAATAACTCT
CAACATCGTAGTTTACCGATTTTTTATTTTCTTGGAAGAACATGGAATTC
GTGTCCTTCCAAGACAGGTCGAGACAAATTCGGCAGTGAATTGGCCCATA
GGTATAATAGGCGTTGCCGTCATCTAAAATGTATCAAGCGGTGTTCTACG
ATTCCCCCGAGGAAGAAAAACATTTTGTGTAAATAAGTTCACTGCTGCTC
GCGTTTGCCGCGAGTGGAAGAGCGCAAAAAGCCCCGCTGCTGCGTCCCCC
GAAGAAGACGACAAGACATCGTCTCCCCAGGCCAAAAACCCAAAAAAACC
AAACACATTCCCCAAACCAAAAACAATTAATTAATAAAGTAAACCCCCCC
ATATATTTTATGTCGTTGTTCGTGTATTACGAAGCATACTACAAATATCA
ACACAGAAAGACTTCAATACCCATTCGAGATAACACCACAGTCGAACGGG
ATGTGTTTAAAGTAGAGCGGGGGTTGTCTGTCGTGACCTACATTGTATAG
TACCCTCTTTAATGAAGACCCTACCCTATTTAATCCTAGCGTGCCGTCTT
CGCGAGTAATTAAGTTTATCGAGGAAATAGCACAGGGAGCGGATGGATAC
GCAGGTCCGTTTCCCTAACCCTGGCCCTAGCTCAACAACTTCCCGGAAAG
GATAATTTCTCCAACATGTTGACATACTGAACAGAAAAAACCTGCGAAGC
GGGCTTCTAACCTTAGCCCTACCCCTACCTCCCAGCCCATGCCGTAACTC
ATACCAAAACCAAACTTGTACTGTTGTATCCCCGCAGAAGGCTGCTGAAC
AACAACGCCCTGCTTTGGCTGGTTCGTACATACATGTTTTCGTTGTTGTC
CTTGCGATTGTATGCTCCATATACCATCCAACATGGTTACTGAATATAAT
TCCGCTGCGAAGGGAGCTACTGACCTCAGCCCTACCCCCCCGCCCATACT
GTTGCTCGTGCTGTGCTATGTATAAGCAAGCTGTTATGCTGTATCCTCGC
GAAGGCTGATGTAATGCAACGGTCTGTTGGTTGTTTCTCAGTACATGTGT
TCGTTGGATGTTCCGGGCTCATGCGCGGTTCCGCCAGCATTTTTTTTTTT
ATTCTCAAGCACTTGTGGTCTGCCTCGTACATGTGGTCTGCTTCGTACAT
GTGCATATCTCGCGTTTGAGGATGTTCTGGGTCCTTTTTTCTCTCCGTTT
CTTTGGTCTCACAGAATTGTGTGATACTGCTGCACACTTGAATAGTACAA
AAGTTTGCCTTTGTGACCCCACGGAACGTAATATGTTGTCCACGTTGGTG
TGTGATGATTGTATTGTTGGCGTCTAACCTTTCTCCCGACTAATTTTTTT
TCTCAAAATAATGTGCTCCTTTGTTAGGCAAGCATTCGCTGTACATGAGC
CCAAAACTGTAATTTGTGCTCGGTTTTCGGCCAATTGAGGTGTGCTCAAC
TGTGTCAAATATGGTCGACTTATGCCAAACATTTCGATATGCTTTTATGC
TTTGTGACGCTCGAGCATAATGGGGAAAGGCCTACTCTCGTGCTCGCTCT
CCTCTTTCCAGGCGATTCGACGAGTCCGCGGACGCGGTTTGGGGGGCCAC
GCGGCAGGGAGATACAAGGGGGGGGGGCGGGGGGAGGAGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15193:75..3915-

>mRNA_Ecto-sp13_S_contig15193.3913.1 ID=mRNA_Ecto-sp13_S_contig15193.3913.1|Name=mRNA_Ecto-sp13_S_contig15193.3913.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15193:75..3915- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTCCATCTGGAGGACCCCTGACGCGAACGAACTTGGAACGAACAAC
ACATCGACATCCCTTCGCTCGGGCTACTACGACTACGCTGTGCAGGGACG
CAGGAGGGCGAAGGCAGGGATCGTGTCGGAGTAGGGGAGAGGGAGAGGGC
ACACACTTACGCGCGCTCGCGACTAAGGGCCCCGGCCGGGCAGCGCGCGC
CCTGATCTGCGATTCGACGAGTCCGCGGACGCGGTTTGGGGGGCCACGCG
GCAGGGAGATACAAGGGGGGGGGGCGGGGGGAGGAGGG
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