mRNA_Ecto-sp13_S_contig15138.3877.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15138.3877.1
Unique NamemRNA_Ecto-sp13_S_contig15138.3877.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15138.3877.1 vs. uniprot
Match: A0A6H5KY69_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY69_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 2.260e-27
Identity = 145/226 (64.16%), Postives = 148/226 (65.49%), Query Frame = 3 
Query:  177 MDARSGSQLALAESQNIQQVDQVRAGLFPTKNPVSARPASSSASPASPSS-------TGGKKSPGGAAAVNXXXXXXXXXXXXXXXXXXXXXXPAPPXXXXXXXXXXXXXXXXXXXXXTAFATPAXXASFSXXXXXAKGGGVVTVGAGQPAGAXXXXXXXXXXXXXXXS------AVDRMMLASPAVSGEASAEASAARVEGTAVPAVVDAEAESLALARQLMEEE 815
            MDARSGSQLALAESQNIQQVDQV AGLFPTKNPVSA  ASSSA+             TG KKS G AAAV+                      PAP XXXXXXXXXXXXXXXXXXXXXTAFATPA  AS  XXXX  K G VVTVG       XXXXXXXXXXXXXXX       AVDRM+LASPA  GE  AEA         VPAVVD EAESLALARQLMEEE
Sbjct:    1 MDARSGSQLALAESQNIQQVDQVGAGLFPTKNPVSASLASSSATXXXXXXXXXXXXXTGDKKSLGVAAAVDSPAQGSFSSKERRPGGRVAASAPAPXXXXXXXXXXXXXXXXXXXXXXTAFATPAAPASXXXXXXPTKAGRVVTVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVDRMILASPAAFGEGPAEA---------VPAVVDTEAESLALARQLMEEE 217
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BLAST of mRNA_Ecto-sp13_S_contig15138.3877.1 vs. uniprot
Match: D7FY13_ECTSI (Ring finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY13_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.570e-11
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 3 
Query:  675 MMLASPAVSGEASAEASAARVEGTAVPAVVDAEAESLALARQLMEEE 815
            MMLASPA SGEASAEASAA VEGTAVP+V DAEAESLALARQLMEEE
Sbjct:    1 MMLASPAASGEASAEASAATVEGTAVPSVGDAEAESLALARQLMEEE 47
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15138.3877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KY69_9PHAE2.260e-2764.16RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FY13_ECTSI1.570e-1191.49Ring finger protein n=1 Tax=Ectocarpus siliculosus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15138contigEcto-sp13_S_contig15138:49..2910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score72.8
Seed ortholog evalue2.2e-10
Seed eggNOG ortholog2880.D7FY13
Preferred nameRLIM
Model size815
KEGG koko:K15701,ko:K16271
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007549,GO:0008150,GO:0008152,GO:0009048,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016567,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032446,GO:0036211,GO:0040029,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043433,GO:0043632,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051090,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051603,GO:0060255,GO:0060816,GO:0061630,GO:0061659,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0071704,GO:0080090,GO:0140096,GO:1900095,GO:1901564,GO:1901565,GO:1901575,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons3
EggNOG free text desc.protein modification by small protein conjugation or removal
EggNOG OGsKOG4628@1,KOG4628@2759
EC2.3.2.27
Cds size639
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462805.6922815-CDS-Ecto-sp13_S_contig15138:48..4781681462805.6922815-CDS-Ecto-sp13_S_contig15138:48..478Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15138 49..478 -
1681462805.7053044-CDS-Ecto-sp13_S_contig15138:1332..14751681462805.7053044-CDS-Ecto-sp13_S_contig15138:1332..1475Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15138 1333..1475 -
1681462805.715243-CDS-Ecto-sp13_S_contig15138:2668..27341681462805.715243-CDS-Ecto-sp13_S_contig15138:2668..2734Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15138 2669..2734 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462805.7229266-UTR-Ecto-sp13_S_contig15138:2734..29101681462805.7229266-UTR-Ecto-sp13_S_contig15138:2734..2910Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15138 2735..2910 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15138.3877.1prot_Ecto-sp13_S_contig15138.3877.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15138 49..2734 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15138.3877.1

>prot_Ecto-sp13_S_contig15138.3877.1 ID=prot_Ecto-sp13_S_contig15138.3877.1|Name=mRNA_Ecto-sp13_S_contig15138.3877.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=213bp
MDARSGSQLALAESQNIQQVDQVRAGLFPTKNPVSARPASSSASPASPSS
TGGKKSPGGAAAVNSPAQGASSSNERRPGGRIAVSAPAPPATPAVTATTT
TVPTAPAAAAATAFATPAAPASFSTPAAPAKGGGVVTVGAGQPAGAAAAA
AAAAAAGSDDSSAVDRMMLASPAVSGEASAEASAARVEGTAVPAVVDAEA
ESLALARQLMEEE
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mRNA from alignment at Ecto-sp13_S_contig15138:49..2910-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15138.3877.1 ID=mRNA_Ecto-sp13_S_contig15138.3877.1|Name=mRNA_Ecto-sp13_S_contig15138.3877.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2862bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15138:49..2910- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTGCTTGCCGTTCCATAGCTGAAGCTACGTGTGCTTCTGTCCCTGCAT
CATTTTGCCAGAGCACCAAGCTGCTTTTGATGCTGGGTCTTTACTGAAGC
CAACTTGCGAATCTCCCCAGAGAGAGGCTCAACGGCTCATCTCCAGCACA
GCAAGAAGACCCAAGGTCTGATCATCATGGACGCACGATCCGGCTCCCAG
CTCGCCCTCGCCGAGTCGCAGAACATCCAACAGGTTGATCAGGTGAGAGC
TGGTGTTGCTTGATAGCAGGAGCGTATGGTGCATCCCCACCCACTGTCTA
CTGGACGAGGTGTGGCGGTCAGTGTTTGGAGCGGGGAGCGTTCCACTTTT
TTTTGCGCCAAAAACACACCAACACATGGAAACACAAACGGCCATGTTTT
GTCGGGCATGGTTGATCTCGTGTGACGAGAGACAACTCAACGTCATGGGG
ATCAACATGAACAACCGCTGCTGCAGGCATCTAGACGGCCAACCTGTACA
GTCTTCTAACAAGATAGGCTTCGTTTACGTAGGTTGATCAGTATTACGGG
CGGGTTCCATATGTGCCTATTTGCATGTAATACATACGCTGTCAAGGAGG
ATGCGAGATAACCCGCCGTGTTAGAGTGTAGACAGAGGGCAAGCGGTTGC
TGAAGGTGGCGTGAGGGTGTGACAGCTAATTCTCGCTGCCGTCTCAATCC
CTTCCGGAGAGCATGTCACCGATTACAGCAGTACTGCTGGCTGCGAAAAA
GTCGATGCGTACTGGGACCACAAGGCCGCGGGACCTAGTCCCTCCTGAAA
GCACGTGTAGTACGTATACTCTCACATCAACTGCTGCCTTACGATGATTC
CGATCAAGCTTTGGCAGTACAGGCAGTGCGGTGTGCTGGACGCATGAACA
GTAGTCTCGCGCCCTTTCATGACGTTCGCTCCGCTATTATGTAGTGGCCG
GCTGGCGGGGGCATGCCGGCGGGGGGGGGTCTGGAATATCTACCACGGTA
AAATAACCACGTACCTCTATAGATACTAAGATGGAAAGTCTGCCCATGAC
ATGGCCAGATATCAACGCTCCTTACTGTTATTTCAAGAACGTAACGAATT
CACGTCTCTTCCACCGATAGATACATGAGGTTCGGGATTTGCATTTGATT
TGATCGGCGATGATTTCATAGCGTTGTGTGATGACTCAATCTGTTGTTTC
TATATACATGTTTCGAACCTTGTTGCGAGCTTTGGTGAGCGAGCTTCGAG
CTGACTTGAGTAGGCCCTTCATCTCTGCTCCGATGTACCGTGGGTTCCCG
ACACGCGGGGGCGGAAAGTTGTGTAGATACTCATTTATGGCCCTCGCTAA
TTTGCCCCCCGCCCCCTTCTCGATCTCTCGTCCGCTTGTTGCCTTCCGGC
GCGCTGCGCTGCTGCTGCCTTGCGCGTGACTGCAGGTTCGAGCTGGGCTG
TTTCCAACCAAGAACCCAGTAAGCGCAAGGCCCGCCTCGTCTTCTGCTAG
CCCCGCCTCTCCCTCCTCTACCGGCGGCAAAAAATCTCCCGGGGGCGCCG
CCGCCGTCAATTCACCAGCGCAAGGTGCGTCAGGAATTATTTGTAATCCC
CTGGGATCTTACATCTAGCACCGGGGGGGGGGGGGGGTGCTCTTATGTTT
TATGCGCCTTAGCGGGGAGACCATTGACCACACGTCCAGGACGGAACATC
GTTCCCGCAGGACCGATCACCGATGGCCAATCGGTCCTTCCTACCTTCAA
CAGGGGGGTGGGGGGGGGGGTTAGCACGAGCGAACACCCTTTTTTTGTTT
CGTCATGCGCCAGGAGTCGTGCTTCTCGACTAAAACAAATCATTGTTGCG
CGAATGATTACTGTGTCGTTTTATTGTTTCGATAGCTTGTAGGTAGATTG
TGCCGAAGGTTGATTGACGCTCCTTCCGCACATCAATTTAGTTTCCGTGT
TACTCTCCGGCTGGCCCGTGTATTAAAACGTTCAACAACCAACAGGCGTT
TCTTTCTGACACCCTCGGGGTTGTGCAGACCGTGCAAGCACATAGAAGCT
TCAGCTTTCCCGACAAAATTTTTACTTGGTACAAAACAGGATTTGTTGCG
TCTGAGCTGCTGTTGACATGGACGGTATGCACCCGCCGTTTTTCGTTTGG
GTAAGGGTAAGCGTTAGGGATAGAACCGCAACTGCTTTTTTTCGTTCTCC
CTGTATCTCTTTCGGTCTTGTCTATCTCCCTCCGTATCTCTTCGACCTAC
CCTTGGCAAGATCGTTTCCACGGGAAACAAATCGAGATAAGACGGTGATA
AGCAAAAAAACAAAACACAGACGTGAAAGCATGCACGAGGAGAAGAAAGT
TCGGTTGCTCTCGCACGCTTCCCTGGTGCCCACCGCAATCTGTTCGTGAT
TGGAACCCACGCATCGACGACAACGCAGGGAGTTCTTCGTCCAATGAGAG
ACGGCCGGGAGGAAGGATTGCAGTGTCGGCACCAGCACCACCAGCGACGC
CGGCTGTAACTGCCACCACAACAACAGTTCCTACAGCCCCAGCAGCGGCG
GCAGCAACAGCGTTCGCAACGCCGGCAGCACCTGCGTCCTTCTCAACACC
TGCGGCACCAGCAAAGGGAGGAGGAGTGGTGACGGTTGGGGCAGGGCAAC
CGGCAGGAGCAGCTGCAGCAGCAGCAGCAGCAGCAGCAGCAGGTTCGGAT
GATTCTTCTGCGGTTGACAGGATGATGCTCGCGAGCCCAGCCGTGTCAGG
AGAGGCGTCGGCGGAGGCGTCGGCGGCAAGAGTAGAGGGCACGGCGGTGC
CGGCTGTAGTAGACGCGGAGGCCGAGTCCCTTGCCCTGGCGAGACAGCTC
ATGGAAGAGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15138:49..2910-

>mRNA_Ecto-sp13_S_contig15138.3877.1 ID=mRNA_Ecto-sp13_S_contig15138.3877.1|Name=mRNA_Ecto-sp13_S_contig15138.3877.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15138:49..2910- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGCACGATCCGGCTCCCAGCTCGCCCTCGCCGAGTCGCAGAACAT
CCAACAGGTTGATCAGGTTCGAGCTGGGCTGTTTCCAACCAAGAACCCAG
TAAGCGCAAGGCCCGCCTCGTCTTCTGCTAGCCCCGCCTCTCCCTCCTCT
ACCGGCGGCAAAAAATCTCCCGGGGGCGCCGCCGCCGTCAATTCACCAGC
GCAAGGTGCTTCTTCGTCCAATGAGAGACGGCCGGGAGGAAGGATTGCAG
TGTCGGCACCAGCACCACCAGCGACGCCGGCTGTAACTGCCACCACAACA
ACAGTTCCTACAGCCCCAGCAGCGGCGGCAGCAACAGCGTTCGCAACGCC
GGCAGCACCTGCGTCCTTCTCAACACCTGCGGCACCAGCAAAGGGAGGAG
GAGTGGTGACGGTTGGGGCAGGGCAACCGGCAGGAGCAGCTGCAGCAGCA
GCAGCAGCAGCAGCAGCAGGTTCGGATGATTCTTCTGCGGTTGACAGGAT
GATGCTCGCGAGCCCAGCCGTGTCAGGAGAGGCGTCGGCGGAGGCGTCGG
CGGCAAGAGTAGAGGGCACGGCGGTGCCGGCTGTAGTAGACGCGGAGGCC
GAGTCCCTTGCCCTGGCGAGACAGCTCATGGAAGAGGAG
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