mRNA_Ecto-sp13_S_contig15136.3876.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15136.3876.1 vs. uniprot
Match: D7FWE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWE3_ECTSI) HSP 1 Score: 280 bits (717), Expect = 5.470e-85 Identity = 183/253 (72.33%), Postives = 189/253 (74.70%), Query Frame = 1
Query: 4 LVYGVMSHVAISAHMMVLKEYGGVTAVLVGNTRKSMTIALSFVLFPKPFSYRFVLGGALVLGGLVANVMIKERRKAIESGRKPRSHEILPQLAVNAGKISKGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------ISVGTPIDRLSSSNQKRQRNQQHHDTAIGHLKQGLLPSWRAAAASRSGWRFAPWRAAAGVPVRESVTSGEGAGV 732
LVY VMSHVAISAHMMVLKEYG VT VLVGNTRKSMTIALSFVLFPKPFSYRFVLGGALVLGGL ANVMIKERRKA ESGRK RSHEILPQLAVNAGKI+KG+DG XXXXXXXXXXXXXXXXXX XXXX ISVG PIDRLSSSNQKRQR+QQ HDTA GHLKQGLLPSWRAAAA+RSGWRFAPWRAAAGVP R+SV SGEG G+
Sbjct: 341 LVYCVMSHVAISAHMMVLKEYGSVTTVLVGNTRKSMTIALSFVLFPKPFSYRFVLGGALVLGGLAANVMIKERRKATESGRKSRSHEILPQLAVNAGKINKGEDGGSGRGVGGDGSTASIGNGTSXXXXXXXXXXXXXXXXXXTKDPASESLLPPSSAPLMTGVGXXXXXXXXXXXXXXISVGNPIDRLSSSNQKRQRHQQQHDTATGHLKQGLLPSWRAAAAARSGWRFAPWRAAAGVPARDSVASGEGRGL 593
BLAST of mRNA_Ecto-sp13_S_contig15136.3876.1 vs. uniprot
Match: A0A6H5JDY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDY8_9PHAE) HSP 1 Score: 245 bits (625), Expect = 1.850e-71 Identity = 201/225 (89.33%), Postives = 205/225 (91.11%), Query Frame = 1
Query: 4 LVYGVMSHVAISAHMMVLKEYGGVTAVLVGNTRKSMTIALSFVLFPKPFSYRFVLGGALVLGGLVANVMIKERRKAIESGRKPRSHEILPQLAVNAGKISKGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------ISVGTPIDRLSSSNQKRQRNQQHHDTAIGHLKQGLLPSWRAAAASRSGWR 660
LVYGVMSHVAISAHMMVLKEYGGVTAVLVGNTRK+MTIALSF+LFPKPFSYRFVLGGALVLGGL ANV+IKERRKA ESGRK RSHE LPQLAVNAGKISKG DG XXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ISVGTP DRLSSSNQKRQR+QQ HDTA GHLKQGLLPSWRAAAASRS WR
Sbjct: 358 LVYGVMSHVAISAHMMVLKEYGGVTAVLVGNTRKAMTIALSFILFPKPFSYRFVLGGALVLGGLAANVIIKERRKATESGRKHRSHEFLPQLAVNAGKISKGADGGXXXXXXXXXXXXXXXXXXXIGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISVGTPSDRLSSSNQKRQRHQQQHDTATGHLKQGLLPSWRAAAASRSDWR 582
BLAST of mRNA_Ecto-sp13_S_contig15136.3876.1 vs. uniprot
Match: A0A482S5E2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S5E2_9ARCH) HSP 1 Score: 89.7 bits (221), Expect = 1.440e-17 Identity = 44/92 (47.83%), Postives = 62/92 (67.39%), Query Frame = 1
Query: 4 LVYGVMSHVAISAHMMVLKEYGGVTAVLVGNTRKSMTIALSFVLFPKPFSYRFVLGGALVLGGLVANVMIKERRKAIESGRKPRSHEILPQL 279
++Y ++++AI+ HM ++KE+GG+T VLVGN RK+MTI LSF+LFPKP S ++ GG LV G LV N +KE+ I SG+K P
Sbjct: 75 IIYTFLAYIAITFHMALVKEFGGITTVLVGNMRKAMTIVLSFILFPKPMSPLYIFGGILVFGSLVGNAFLKEK---ITSGKKGGGGNAAPSF 163
BLAST of mRNA_Ecto-sp13_S_contig15136.3876.1 vs. uniprot
Match: A0A7R9VZ40_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VZ40_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 7.790e-17 Identity = 47/109 (43.12%), Postives = 74/109 (67.89%), Query Frame = 1
Query: 7 VYGVMSHVAISAHMMVLKEYGGVTAVLVGNTRKSMTIALSFVLFPKPFSYRFVLGGALVLGGLVANVMIKERRKAIE-SGR----KPRSHEILPQLAVNAGKISKGDDG 318
VY ++++VAIS +M ++K +GGV AVL+ RK MT+ LSF+LFPK FS+ +V G +LVLGGL+A +IK++ ++IE SG KP + ++ L + ++ G+ G
Sbjct: 17 VYTMIAYVAISTYMNIVKRFGGVAAVLLATARKGMTLVLSFLLFPKAFSWFYVAGASLVLGGLLAASLIKQKMRSIEKSGEREPLKPGAQDVENDLEKGSKNLTGGEQG 125
BLAST of mRNA_Ecto-sp13_S_contig15136.3876.1 vs. uniprot
Match: K8YSK2_NANGC (Solute carrier family member b3 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSK2_NANGC) HSP 1 Score: 89.7 bits (221), Expect = 1.860e-16 Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 1
Query: 4 LVYGVMSHVAISAHMMVLKEYGGVTAVLVGNTRKSMTIALSFVLFPKPFSYRFVLGGALVLGGLVANVMIK--ERRKAIESGRKPRSHEILPQLAVNAGKI 300
LVY ++++VAIS HM ++K +G V AVLVGN+RK+MTI LSF+LFPKPFS +V+GG LVL GL +V +K +++K + E++ AV G +
Sbjct: 185 LVYTLLAYVAISLHMALVKSFGSVAAVLVGNSRKTMTICLSFLLFPKPFSNLYVVGGMLVLAGLTVSVYVKNMDKKKGADDAVLNCKGEVVGPTAVGNGGL 285
BLAST of mRNA_Ecto-sp13_S_contig15136.3876.1 vs. uniprot
Match: W7U2S7_9STRA (Udp-galactose transporter n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2S7_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 6.870e-16 Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 1
Query: 4 LVYGVMSHVAISAHMMVLKEYGGVTAVLVGNTRKSMTIALSFVLFPKPFSYRFVLGGALVLGGLVANVMIK--ERRKAIESGRKPRSHEILPQLAVNAGKI 300
LVY ++++VAIS HM ++K +G V AVLVGN+RK+MTI LSF+LFPKPFS +V+GG LVL GL +V +K +++K + E++ AV G +
Sbjct: 299 LVYTLLAYVAISLHMALVKSFGSVAAVLVGNSRKTMTICLSFLLFPKPFSNLYVVGGMLVLAGLTVSVYVKNMDKKKGADDAVLNCKGEVVGPTAVGNGGL 399
BLAST of mRNA_Ecto-sp13_S_contig15136.3876.1 vs. uniprot
Match: A0A7S0F0Q5_9CRYP (Hypothetical protein n=3 Tax=Geminigeraceae TaxID=589343 RepID=A0A7S0F0Q5_9CRYP) HSP 1 Score: 87.4 bits (215), Expect = 2.980e-15 Identity = 44/75 (58.67%), Postives = 57/75 (76.00%), Query Frame = 1
Query: 4 LVYGVMSHVAISAHMMVLKEYGGVTAVLVGNTRKSMTIALSFVLFPKPFSYRFVLGGALVLGGLVANVMIKERRK 228
++Y ++++VAIS HM V+ YG V AVLVGN RK+ TIALSF+LFPKPFS+ +V G LV GGL A IK+RR+
Sbjct: 286 IIYTIVAYVAISFHMRVVSRYGSVIAVLVGNIRKAGTIALSFLLFPKPFSWFYVYGTLLVFGGLTATAYIKDRRR 360
BLAST of mRNA_Ecto-sp13_S_contig15136.3876.1 vs. uniprot
Match: A0A7S2LH66_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LH66_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 2.840e-14 Identity = 43/99 (43.43%), Postives = 70/99 (70.71%), Query Frame = 1
Query: 4 LVYGVMSHVAISAHMMVLKEYGGVTAVLVGNTRKSMTIALSFVLFPKPFSYRFVLGGALVLGGLVANVMIKERRKAIESGRKPRSHEILPQLAVNAGKI 300
LVY ++++AISA M V+K +GGVTAVL+G RK MT+ LSF++FPK FS+ +VLG LVLGGL+++ +IK+ + ++ ++ + L Q ++ ++
Sbjct: 244 LVYTFVAYIAISAFMQVVKRFGGVTAVLLGTARKGMTLILSFLVFPKKFSWFYVLGAILVLGGLLSSSLIKQGKSKEQNLPSYQAVKSLDQTRIDEDEV 342
BLAST of mRNA_Ecto-sp13_S_contig15136.3876.1 vs. uniprot
Match: A0A7S3VAD5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VAD5_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 3.840e-14 Identity = 45/97 (46.39%), Postives = 66/97 (68.04%), Query Frame = 1
Query: 7 VYGVMSHVAISAHMMVLKEYGGVTAVLVGNTRKSMTIALSFVLFPKPFSYRFVLGGALVLGGLVANVMIKERRKAIESGRKPRSHEILPQLAVNAGK 297
VY ++S+VAIS+ M ++K+YGGVTAVL+G RK MT+ LSF+LFPK FS+ +VLG +VLGGL+ ++K+ K ++ K E L + G+
Sbjct: 327 VYTMISYVAISSFMTIVKKYGGVTAVLLGTARKGMTLILSFLLFPKQFSWLYVLGATMVLGGLLVASLVKQFSKKNKNVDKKELSEAEEPLLDDRGE 423
BLAST of mRNA_Ecto-sp13_S_contig15136.3876.1 vs. uniprot
Match: A0A1Z5KIZ6_FISSO (Solute carrier family 35 (Adenosine 3'-phospho 5'-phosphosulfate transporter), member B3 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KIZ6_FISSO) HSP 1 Score: 83.6 bits (205), Expect = 5.460e-14 Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = 1
Query: 4 LVYGVMSHVAISAHMMVLKEYGGVTAVLVGNTRKSMTIALSFVLFPKPFSYRFVLGGALVLGGLVANVMIKERRKAIESGRKPRSHEILPQLAVNAGKISKGDD 315
L+Y ++S+VAIS HM V+K +GGVTAVLV RK MT+ LSFVLFPK FS+ + G LVLGGL+ + + K +K G++PRS QL +A + + D
Sbjct: 250 LIYTIISYVAISMHMNVVKRFGGVTAVLVATGRKGMTLILSFVLFPKGFSWFYPAGAILVLGGLMYSSLYKMSQK---KGQQPRS-----QLKHHASDVQELSD 345 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15136.3876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15136.3876.1 >prot_Ecto-sp13_S_contig15136.3876.1 ID=prot_Ecto-sp13_S_contig15136.3876.1|Name=mRNA_Ecto-sp13_S_contig15136.3876.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp MSHVAISAHMMVLKEYGGVTAVLVGNTRKSMTIALSFVLFPKPFSYRFVLback to top mRNA from alignment at Ecto-sp13_S_contig15136:2638..4142- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15136.3876.1 ID=mRNA_Ecto-sp13_S_contig15136.3876.1|Name=mRNA_Ecto-sp13_S_contig15136.3876.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1505bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15136:2638..4142- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15136:2638..4142- >mRNA_Ecto-sp13_S_contig15136.3876.1 ID=mRNA_Ecto-sp13_S_contig15136.3876.1|Name=mRNA_Ecto-sp13_S_contig15136.3876.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15136:2638..4142- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |