mRNA_Ecto-sp13_S_contig1511.3859.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1511.3859.1
Unique NamemRNA_Ecto-sp13_S_contig1511.3859.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1511.3859.1 vs. uniprot
Match: A0A6H5JUF8_9PHAE (APG6 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUF8_9PHAE)

HSP 1 Score: 340 bits (871), Expect = 3.080e-113
Identity = 213/243 (87.65%), Postives = 223/243 (91.77%), Query Frame = 1 
Query:    1 MAYRELQGRLQLAERQVRMYREAMEHLIAAPPAARPAASQPSARPIATTAGAAQESLSKISAGGDNYPGATEPAPGAVPDVATTGGAKAESVAEGDDDSVLDHGRGKTKKEVPRLSSGDAEGAESSAGSTAAGKGPNIWGFIGGAVGWIGEGTAGWMAQSEARREHHRLLEEVGKVRRRRAAVWRERELLAXXXXXXXXXXXXXXXXXXXXXXXXSDVAEARQNCRSRKALYSEQLVSAMRMG 729
            MAYRELQGRLQLAE+QVRMYREAMEHLIAAP AA PAASQ  A PI+TTAG AQE+LSKI AGG+N P  T+PAPGA+PDVATTGGAKAE+VAEGDDDSV DHGRG TKKEVPRLSS DAEGAESSAGSTAA KGP+IWGFIGGAVGWIGEGTAGWMAQSEARREHHRLL EVGKVRRRRAAVW+ERELLA     XXXXXXXXXXXXXXXXXXXSDVA+ARQNCRSRKALYSEQLVSAMRMG
Sbjct:    1 MAYRELQGRLQLAEQQVRMYREAMEHLIAAPSAAYPAASQSRASPISTTAGVAQENLSKIFAGGENDPDNTKPAPGAIPDVATTGGAKAEAVAEGDDDSVSDHGRGGTKKEVPRLSSDDAEGAESSAGSTAAEKGPSIWGFIGGAVGWIGEGTAGWMAQSEARREHHRLLGEVGKVRRRRAAVWQERELLAKARAEXXXXXXXXXXXXXXXXXXXSDVADARQNCRSRKALYSEQLVSAMRMG 243
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1511.3859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JUF8_9PHAE3.080e-11387.65APG6 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1511contigEcto-sp13_S_contig1511:271..3604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score353.6
Seed ortholog evalue7.4e-95
Seed eggNOG ortholog2880.D7FJA3
Model size729
KEGG koko:K08334,ko:K19683
KEGG Pathwayko04136,ko04137,ko04138,ko04140,ko04215,ko04371,ko05167,map04136,map04137,map04138,map04140,map04215,map04371,map05167
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.cellular response to nitrogen starvation
EggNOG OGsKOG2751@1,KOG2751@2759
Ec32 ortholog descriptionBeclin
Ec32 orthologEc-12_008290.1
Cds size729
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko03036,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462804.4578853-CDS-Ecto-sp13_S_contig1511:270..4161681462804.4578853-CDS-Ecto-sp13_S_contig1511:270..416Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1511 271..416 -
1681462804.4715972-CDS-Ecto-sp13_S_contig1511:1175..13471681462804.4715972-CDS-Ecto-sp13_S_contig1511:1175..1347Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1511 1176..1347 -
1681462804.4820824-CDS-Ecto-sp13_S_contig1511:2245..26081681462804.4820824-CDS-Ecto-sp13_S_contig1511:2245..2608Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1511 2246..2608 -
1681462804.492059-CDS-Ecto-sp13_S_contig1511:3556..36041681462804.492059-CDS-Ecto-sp13_S_contig1511:3556..3604Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1511 3557..3604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1511.3859.1prot_Ecto-sp13_S_contig1511.3859.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1511 271..3604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1511.3859.1

>prot_Ecto-sp13_S_contig1511.3859.1 ID=prot_Ecto-sp13_S_contig1511.3859.1|Name=mRNA_Ecto-sp13_S_contig1511.3859.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=243bp
MAYRELQGRLQLAERQVRMYREAMEHLIAAPPAARPAASQPSARPIATTA
GAAQESLSKISAGGDNYPGATEPAPGAVPDVATTGGAKAESVAEGDDDSV
LDHGRGKTKKEVPRLSSGDAEGAESSAGSTAAGKGPNIWGFIGGAVGWIG
EGTAGWMAQSEARREHHRLLEEVGKVRRRRAAVWRERELLAKTRAELARC
RADLLSRRIALDSRRSDVAEARQNCRSRKALYSEQLVSAMRMG
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mRNA from alignment at Ecto-sp13_S_contig1511:271..3604-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1511.3859.1 ID=mRNA_Ecto-sp13_S_contig1511.3859.1|Name=mRNA_Ecto-sp13_S_contig1511.3859.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3334bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1511:271..3604- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTACCGAGAACTGCAGGGGAGGCTCCAGCTCGCTGAGCGGCAGGT
GAGCTTTCGCACCGCTGTACTGCTGGTACGCTACACATATTTCGCCGCAT
TTTTATGTTCACTCTTTCAGGAGCGAATCCGGGTGCCGCTAGAGAACATG
CGTTATTGCAAAACTAGGCAGCTAAATGCATCTGATCAACCCTAGTGTTT
GCCCTGGATCGCCGTGGTTTACGCTGTTTCCGGCCGTGCTGACCGCGACA
AGAAGCTTTCCTCGAGTCTATTGTGCTTGAGTCTAGAGTCCACGGGACCC
CCATCCCAACCAAGCTTTGAGCTACGCACCGATTGAGCAACACAGCTGGC
TGTTTCTTTCATGTGAGATGCGTGTGCGTGTGCACGGAAGTAGAACTGCC
GCGACAACAAGAGGTTGGCAAGCGTTTTTCATTGCACACGTCTACAAGAG
GTTCGCTTGGATGGCAACCGTGCTTGCACACAGCAGGACAGCAACTATCT
CAGAGAGTCAACGATCTAACTTACCGTCGTGCTCCCGTTCTTGGTATTGC
GTGCGACTTGACTCCGCTGCCGCTGCTGGTAAGCTTTATTTTGTACTTGA
AATACTTGGTAACACCGGTACACCTTTCATCCCCACGATGGTCCAAATTT
GTTAACCAGCAAGTTGAGAGCTGCAGCTCTAATCCAGCAGAGGGGGTTGT
GTGTACAGCACCGCACGTAAACAACTCACTATTTTTGGCATATGCACACG
CACTTGCTGGCGGAGAACACAATTCCTGTGCGGCCTACCTCTTCCATGAC
CCCGGCTGGTGCGCCCAGAACTGTACGGGAAAGGGTGCTGGACCGACGTG
CAAAATAAATAGGATGGTGAAAAGAAAAAATCACTTGAGGAGCGTGCGCT
TCTACACACTGCTACTGGTGTTGCGGCGGGCACTGCTGTATGTTTGACCA
TTCTGATTTGAACTTCAATCCTCAAGCTTTCCCGCGCAACACGCAGGTCC
GCATGTACCGGGAGGCGATGGAGCACCTCATTGCGGCGCCCCCAGCAGCG
CGCCCAGCCGCTTCCCAACCAAGCGCAAGGCCAATCGCTACCACAGCAGG
CGCCGCCCAGGAAAGCTTGTCCAAGATCTCCGCCGGTGGGGATAACTATC
CCGGCGCTACGGAGCCGGCTCCCGGGGCAGTACCAGACGTCGCCACCACT
GGAGGAGCGAAGGCGGAATCAGTTGCTGAGGGTGACGACGATAGTGTTTT
AGATCACGGGAGGGGCAAAACGAAAAAAGAGGTCCCACGACTTAGCTCGG
GTGATGCGGAGGGGGCGGAGAGCTCGGCGGGCAGCACCGCAGCAGGAAAA
GGCCCAAACGTAAGCGCGCCACCGTCGGTACCGAGCCACAAGTTTGGAAA
CTCAACTTTTGCTTTTGACAATCATCGCGCGATCTGGAGCAAGAGATTTC
TCGCGAAAAAAGTGTCGGGCAAGAGTTTCGCGGCAAGACTTCCACCGATT
CACGTCAAGCACCTGCCCCTACCACACACGTAGACACTCTCCCGTCACAC
ACTCGCGCACGATCCACGCCATAATTGAACGGCCAAGTCAGAAGTCTTGC
ACTTGGAGTTGCCTGCGATGGCGGCAGCTGTGTAGAATACGTTTTTGTAG
AGTATGCGTCAATAATTTGTGTTGAATGTGAGCATGATTGAGGTCTGCCT
GACTTCGATTAAAAAGCACAACGCCAGGTTTTGTGCCACCAACTCGTTTT
CCAAGCTTCAGTTTCGCGCCCTGGCCGGTTTAGCGGTGTGGTGCGAAGGA
GTGTGCCTGCTTCTCCCCTTTGCTCAATGGACAATTAAGAATCGCGCCTC
CGCTTTCCACCTGTCCCGCGAAGAAAGATTTCTTCACCCTGTAGTGAGCG
TGCATTAATAGTATTTTTGACAAAAGTACCGGACCAAAAGTTGCCAAGAA
AATTACGTTGTCGCAACGTTGTTCTTCCGAATAAAGCGGTGTAACAATTT
AGAGCCAGAAGCAGGGACAGTTCCGTCACCGGCGACATCCAATAGCCCAT
GAATCGACCCTTCGGCCTTCTTCAGCAGTCTGGGCAGGATTTTCGAAGTA
AGCAAACATGCTGGATATATGTACATCGTGTAGGTTTACAGTTAGGGTCT
GCGTGCCCCCTTCCTGGTCCTCTTTCGTAGTAAGTGTACCTTCGTATTAT
GCAGTCTTCGTCACCCTGTCAATTGCATCGCCTGCCGCCCTGTGCCTACG
GCCACAGATTTGGGGCTTCATCGGGGGTGCCGTAGGGTGGATCGGGGAAG
GGACGGCGGGCTGGATGGCGCAGTCGGAGGCTAGACGGGAGCACCATCGG
CTCCTCGAAGAAGTTGGAAAGGTTCGAAGACGACGGGCGGCGGTGTGGCG
AGAGAGGGAGCTGCTGGCGAAAACACGAGGTGTGTGCTTTCCCTGATTCA
TTCGGGTCCAGGGGACGACCAAAAGGTTGGATTGCCCGTCACCTGCCTGT
GTGAGCGATTCCACGCTCATGTTTTTGTCTATGATCCCCGTTGCGATTGT
CTTGTGGTGACGACACGGAAAGCATATTGACAGCCTGACTGTCCTTCATG
CTTGTGTGCATAGCATTCCGCGCATGCCTATGTCGGCCAAGGCTTCGTGC
ATGCCAGCCCTGGGCGGCACGCCCGTAATGTTGTGTCGGCGATGCTCCAG
AAAGCAGATCGGTGGATCCGAGAAGGCCCGATGCCATGAAATTCCTAAGC
TACTGAACATCTGGTGTTCTTTGTTCCGTAACCGCTTTGCAACAGGGGTC
CCAGCGCCAGCTGGGTGGGAGCCGTATGTAAATAGTGAGAGTCCGTAGAG
ACGAACGATCTGCCCTCGAGTACCTCGCCCACAGAATAAATAGCCTTGGG
AGAATAAGACGAGATGCTCGTTCGTGGTGTTGAAAACATGGCCATTGAAA
GCGCCTTGAGGTTAAGGTGGCCTTACTGTTGCACCTCGTTGGATGTAGGG
CTGCCTCCCGGGGCACTGGGGATAGGCAGGTAGGTATACGAAAGGCATCT
ACAAACACTACCGTCGTCCCTTTTCTTCAGTGTTGCGACCATTCGTCTCC
TGGAAAAGTCGATGAAGAACTTCCTCTCCCCCTCACATGTCTGATACCAC
GTCCCCTGCGTGCATTCATCATACCCACCCACCTACAGCGGAGCTAGCGC
GATGTCGAGCCGACCTCCTGTCCCGAAGGATCGCCTTGGACTCGAGGAGG
AGCGACGTGGCGGAGGCTCGACAGAACTGCCGGAGCCGGAAGGCGTTGTA
CTCTGAGCAGCTTGTCAGCGCCATGAGGATGGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1511:271..3604-

>mRNA_Ecto-sp13_S_contig1511.3859.1 ID=mRNA_Ecto-sp13_S_contig1511.3859.1|Name=mRNA_Ecto-sp13_S_contig1511.3859.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=729bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1511:271..3604- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTACCGAGAACTGCAGGGGAGGCTCCAGCTCGCTGAGCGGCAGGT
CCGCATGTACCGGGAGGCGATGGAGCACCTCATTGCGGCGCCCCCAGCAG
CGCGCCCAGCCGCTTCCCAACCAAGCGCAAGGCCAATCGCTACCACAGCA
GGCGCCGCCCAGGAAAGCTTGTCCAAGATCTCCGCCGGTGGGGATAACTA
TCCCGGCGCTACGGAGCCGGCTCCCGGGGCAGTACCAGACGTCGCCACCA
CTGGAGGAGCGAAGGCGGAATCAGTTGCTGAGGGTGACGACGATAGTGTT
TTAGATCACGGGAGGGGCAAAACGAAAAAAGAGGTCCCACGACTTAGCTC
GGGTGATGCGGAGGGGGCGGAGAGCTCGGCGGGCAGCACCGCAGCAGGAA
AAGGCCCAAACATTTGGGGCTTCATCGGGGGTGCCGTAGGGTGGATCGGG
GAAGGGACGGCGGGCTGGATGGCGCAGTCGGAGGCTAGACGGGAGCACCA
TCGGCTCCTCGAAGAAGTTGGAAAGGTTCGAAGACGACGGGCGGCGGTGT
GGCGAGAGAGGGAGCTGCTGGCGAAAACACGAGCGGAGCTAGCGCGATGT
CGAGCCGACCTCCTGTCCCGAAGGATCGCCTTGGACTCGAGGAGGAGCGA
CGTGGCGGAGGCTCGACAGAACTGCCGGAGCCGGAAGGCGTTGTACTCTG
AGCAGCTTGTCAGCGCCATGAGGATGGGT
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