mRNA_Ecto-sp13_S_contig15105.3858.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15105.3858.1
Unique NamemRNA_Ecto-sp13_S_contig15105.3858.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15105.3858.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 4.560e-41
Identity = 77/84 (91.67%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:    1 LGGTCSISYDLGAVYDLSELRLALYKGATRVRTVDVTVDGSLATTWTSSGTTDGFESIDLSGFFGQDITVTGVLDNSEWLSIKE 252
            LGGTCSISYDLGAVYDLS+LRLALY GATRVRTVDV+VDGSLATTWTSSGTTDGFE+IDLSG+ GQDITVTGVLDN EWLSIKE
Sbjct:  236 LGGTCSISYDLGAVYDLSKLRLALYNGATRVRTVDVSVDGSLATTWTSSGTTDGFENIDLSGYSGQDITVTGVLDNLEWLSIKE 319
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BLAST of mRNA_Ecto-sp13_S_contig15105.3858.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 6.210e-41
Identity = 75/84 (89.29%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:    1 LGGTCSISYDLGAVYDLSELRLALYKGATRVRTVDVTVDGSLATTWTSSGTTDGFESIDLSGFFGQDITVTGVLDNSEWLSIKE 252
            LGGTCSISYDLGAVYDLSELRLALYKG TRVRTVDVTVDGSLATTWTSSGTTDGFE++DLSG+ GQD+TVTGVLD+SEW+SI E
Sbjct:  238 LGGTCSISYDLGAVYDLSELRLALYKGTTRVRTVDVTVDGSLATTWTSSGTTDGFENVDLSGYSGQDVTVTGVLDDSEWVSITE 321
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BLAST of mRNA_Ecto-sp13_S_contig15105.3858.1 vs. uniprot
Match: D7FL48_ECTSI (Leucine rich repeat carbohydrate binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL48_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 4.010e-28
Identity = 59/85 (69.41%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    1 LGGTCSISYDLGAVYDLSELRLALYKGATRVRTVDVTVDGSLATTWTSSGTTDGFESIDLSGFFGQDITVTGV-LDNSEWLSIKE 252
            LGG CSISYDLGA Y + EL+LA+Y+G TRVRTV V VDG L TTWTSSGTT GFES+D+SG  GQ +T+TG  L +SEWLSI E
Sbjct:  232 LGGLCSISYDLGAEYSIDELQLAMYQGDTRVRTVGVAVDGDLVTTWTSSGTTSGFESVDMSGATGQVVTITGAELSDSEWLSIVE 316
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BLAST of mRNA_Ecto-sp13_S_contig15105.3858.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.040e-27
Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:    1 LGGTCSISYDLGAVYDLSELRLALYKGATRVRTVDVTVDGSLATTWTSSGTTDGFESIDLSGFFGQDITVTGVLDNSEWLSIKE 252
            LGG C+ISYDLG  YDL ELRLA++KG  R  ++ V VD +L TTWTSSGTTDGFE+IDLSG +GQ + +TGVLD+SEWLSI E
Sbjct:  222 LGGECTISYDLGTAYDLDELRLAMFKGTERQVSMKVRVDDALVTTWTSSGTTDGFEAIDLSGTWGQVLEITGVLDDSEWLSIIE 305
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BLAST of mRNA_Ecto-sp13_S_contig15105.3858.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 1.430e-27
Identity = 57/84 (67.86%), Postives = 67/84 (79.76%), Query Frame = 1 
Query:    1 LGGTCSISYDLGAVYDLSELRLALYKGATRVRTVDVTVDGSLATTWTSSGTTDGFESIDLSGFFGQDITVTGVLDNSEWLSIKE 252
            LGG C+ISYDLG VY+L ELRLA+YKG  R  T++V VD +L TTWTSSGTTD  E+IDLSG  GQ + +TGVLD+SEWLSI E
Sbjct:  250 LGGECTISYDLGTVYELDELRLAMYKGTERQVTMEVRVDDTLVTTWTSSGTTDDLEAIDLSGTSGQTVEITGVLDDSEWLSIVE 333
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BLAST of mRNA_Ecto-sp13_S_contig15105.3858.1 vs. uniprot
Match: A0A6H5L1V3_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1V3_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 3.240e-25
Identity = 54/85 (63.53%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:    1 LGGTCSISYDLGAVYDLSELRLALYKGATRVRTVDVTVDGSLATTWTSSGTTDGFESIDLSGFFGQDITVTGVLD-NSEWLSIKE 252
            LGG CSISYDLGA Y++ +LRL +Y+G +R RTVDV+VDG+L TTWTSSGTT  FES+DLSG +GQ +T++G    +S+WLSI E
Sbjct:  235 LGGPCSISYDLGAEYNVEQLRLRMYRGDSRTRTVDVSVDGALVTTWTSSGTTTEFESVDLSGAYGQVVTISGSNQADSQWLSIIE 319
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BLAST of mRNA_Ecto-sp13_S_contig15105.3858.1 vs. uniprot
Match: D7FZZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 4.070e-23
Identity = 55/84 (65.48%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:    4 GGTCSISYDLGAVYDLSELRLALYKGATRVRTVDVTVDGSLATTWTSSGTTDGFESIDL-SGFFGQDITVTGVLDNSEWLSIKE 252
            G  CSISYDLG  + L ELR+ALY G  RVRT+DV+VDG L  TWTSSGTTDGFESI    G  G  I + GVLD+SEWLSI E
Sbjct:  299 GAVCSISYDLGREFGLDELRVALYNGDIRVRTIDVSVDGVLVATWTSSGTTDGFESIAFPDGVSGTVINLQGVLDDSEWLSIIE 382
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15105.3858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KFA6_9PHAE4.560e-4191.67F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
A0A6H5KL74_9PHAE6.210e-4189.29F5/8 type C domain-containing protein n=3 Tax=Ecto... [more]
D7FL48_ECTSI4.010e-2869.41Leucine rich repeat carbohydrate binding protein n... [more]
A0A6H5KH45_9PHAE1.040e-2767.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTH1_ECTSI1.430e-2767.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L1V3_9PHAE3.240e-2563.53F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
D7FZZ4_ECTSI4.070e-2365.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15105contigEcto-sp13_S_contig15105:2733..3233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score118.2
Seed ortholog evalue1.8e-24
Seed eggNOG ortholog2880.D7FL48
Model size252
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Cds size252
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462804.421174-CDS-Ecto-sp13_S_contig15105:2732..29171681462804.421174-CDS-Ecto-sp13_S_contig15105:2732..2917Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15105 2733..2917 -
1681462804.4327188-CDS-Ecto-sp13_S_contig15105:3166..32331681462804.4327188-CDS-Ecto-sp13_S_contig15105:3166..3233Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15105 3167..3233 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15105.3858.1prot_Ecto-sp13_S_contig15105.3858.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15105 2733..3233 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15105.3858.1

>prot_Ecto-sp13_S_contig15105.3858.1 ID=prot_Ecto-sp13_S_contig15105.3858.1|Name=mRNA_Ecto-sp13_S_contig15105.3858.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
LGGTCSISYDLGAVYDLSELRLALYKGATRVRTVDVTVDGSLATTWTSSG
TTDGFESIDLSGFFGQDITVTGVLDNSEWLSIKE
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mRNA from alignment at Ecto-sp13_S_contig15105:2733..3233-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15105.3858.1 ID=mRNA_Ecto-sp13_S_contig15105.3858.1|Name=mRNA_Ecto-sp13_S_contig15105.3858.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=501bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15105:2733..3233- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGGCGGCACGTGTAGCATCTCCTACGACCTAGGGGCCGTCTACGACCT
CTCCGAGCTCCGCCTCGGTAAGGCAACGTTTGTTCACGCTCACCATGAAC
CACATCGAACTTCCCTACCGCCCTTCGTATATCAAAACTGTCAGCCTCTA
TTTAATACGTGGTACTTGGACTAGCTGCGACACACGTGTGTTGCACCGAC
TCGTCTGGGCACGACAAATACGGCTTATCTTTTCACCCACGACGCGACCC
ACGTTGCTGACGATTATCACTTCCACCACCCCAATGCCTTACTCGATTCT
TCCAACACACTGTCAGCGTTGTACAAGGGAGCGACCAGGGTCAGGACGGT
CGATGTAACCGTCGATGGTTCTCTCGCCACCACCTGGACCAGCTCTGGCA
CAACGGACGGCTTCGAGAGCATCGATCTATCGGGATTTTTTGGACAAGAC
ATTACCGTCACGGGTGTCCTGGACAATTCGGAGTGGCTCAGTATCAAAGA
G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15105:2733..3233-

>mRNA_Ecto-sp13_S_contig15105.3858.1 ID=mRNA_Ecto-sp13_S_contig15105.3858.1|Name=mRNA_Ecto-sp13_S_contig15105.3858.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15105:2733..3233- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGGCGGCACGTGTAGCATCTCCTACGACCTAGGGGCCGTCTACGACCT
CTCCGAGCTCCGCCTCGCGTTGTACAAGGGAGCGACCAGGGTCAGGACGG
TCGATGTAACCGTCGATGGTTCTCTCGCCACCACCTGGACCAGCTCTGGC
ACAACGGACGGCTTCGAGAGCATCGATCTATCGGGATTTTTTGGACAAGA
CATTACCGTCACGGGTGTCCTGGACAATTCGGAGTGGCTCAGTATCAAAG
AG
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