mRNA_Ecto-sp13_S_contig15100.3856.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15100.3856.1
Unique NamemRNA_Ecto-sp13_S_contig15100.3856.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15100.3856.1 vs. uniprot
Match: A0A6H5K6L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L5_9PHAE)

HSP 1 Score: 494 bits (1271), Expect = 1.510e-161
Identity = 332/460 (72.17%), Postives = 350/460 (76.09%), Query Frame = 1 
Query:    1 MEASEPQRRGWLSWFRQSVWAPSQPEPVSATREGESAGTFFPFLKSSKLPQEARQRPQPQPTNDSSRGPAAAEKLHMREGDRKGAVAEKMSARGVAADEEERWLERDLPLVWTFLREEEGWSFVDKQSGSTDVRGPTATAAGVDGGNGGVAQQEEAGPMSQGQLPSYMRNNAALLRRYRRWLESSSXPMPXSKERFGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSAHADDGSRRGGRDEQQPQQPSGREPALSSGDVRTGHQDGEKRLSRDLPLIWTFMREKEGWGYANGHSWHVCGPDATAGAGIGKQSARPIPQGRLPRYLLDNPELLEKYKRWLAEVSKSSQPPRXXXXXXXXXXXXSDRGCVDNDTPGSHAAESGRPPSPPAFLGAVASEMAAVGSAAFSAATQAPRVPAHDVAPSGSQQQGGRETPEQSQPSRETSASAND 1380
            MEASEPQRRGWLSWFRQSVWAPSQPEP SA RE ESAGTFFPFLKSSKLPQEARQRP                               K SARGVAADEEER LERDLPLVWTFLREEEGWSFVDK+SG+TDVRGPTATAAGV GG GG A +EEAGPMSQGQLPSY++ NA LL+R+RRWL+SSS PMPX   RFGD  XX   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                         +PALSSG  RTGH++ EKRLSRDLPLIWTF+REKEGWG+AN HSWHVCGPDATAGAG GKQ A P+P GRLPR LLDNPEL E+YKRWL EVSKSS    XXXXXXXXXX   DR   D+DTPGS AAESGRPPS         SEMAAVG+AA  AATQAPRVPAHDVAPSGSQ+Q GRETPEQSQPSRETSASAND
Sbjct:    1 MEASEPQRRGWLSWFRQSVWAPSQPEPPSAAREEESAGTFFPFLKSSKLPQEARQRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKASARGVAADEEERRLERDLPLVWTFLREEEGWSFVDKESGNTDVRGPTATAAGVGGGIGGGAHEEEAGPMSQGQLPSYLKENAVLLQRFRRWLKSSSSPMPXXXXRFGDESXXENKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQPALSSGVERTGHENNEKRLSRDLPLIWTFLREKEGWGFANDHSWHVCGPDATAGAGSGKQRAGPMPLGRLPRCLLDNPELFERYKRWLREVSKSSXXXXXXXXXXXXXXSDGDR--FDDDTPGSRAAESGRPPSXXXXXXXXXSEMAAVGAAASLAATQAPRVPAHDVAPSGSQRQVGRETPEQSQPSRETSASAND 458
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BLAST of mRNA_Ecto-sp13_S_contig15100.3856.1 vs. uniprot
Match: D8LDD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDD8_ECTSI)

HSP 1 Score: 270 bits (691), Expect = 2.690e-86
Identity = 142/163 (87.12%), Postives = 145/163 (88.96%), Query Frame = 1 
Query:    1 MEASEPQRRGWLSWFRQSVWAPSQPEPVSATREGESAGTFFPFLKSSKLPQEARQRPQPQPTNDSSRGPAAAEKLHMREGDRKGAVAEKMSARGVAADEEERWLERDLPLVWTFLREEEGWSFVDKQSGSTDVRGPTATAAGVDGGNGGVAQQEEAGPMSQGQ 489
            MEASEPQRRGWLSWFRQSVWAPSQPEP SATRE ESAGTFFPFL SSKLPQEARQ+PQP PTNDSS  PAAAEKL   +GDR GAVAE +SARGVAADEEER LERDLPLVWTFLREEEGWSFVDKQSGSTDVRGPTATAAGV G     AQQEEAGPMSQGQ
Sbjct:    1 MEASEPQRRGWLSWFRQSVWAPSQPEPASATREEESAGTFFPFLMSSKLPQEARQQPQPHPTNDSSSAPAAAEKLPNSDGDRNGAVAEVVSARGVAADEEERRLERDLPLVWTFLREEEGWSFVDKQSGSTDVRGPTATAAGVGGXXXXXAQQEEAGPMSQGQ 163
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15100.3856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6L5_9PHAE1.510e-16172.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDD8_ECTSI2.690e-8687.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15100contigEcto-sp13_S_contig15100:1156..4255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1383
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_001640.1
Cds size1383
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462804.3020954-CDS-Ecto-sp13_S_contig15100:1155..16441681462804.3020954-CDS-Ecto-sp13_S_contig15100:1155..1644Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15100 1156..1644 +
1681462804.3125-CDS-Ecto-sp13_S_contig15100:2888..33951681462804.3125-CDS-Ecto-sp13_S_contig15100:2888..3395Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15100 2889..3395 +
1681462804.321461-CDS-Ecto-sp13_S_contig15100:3868..42551681462804.321461-CDS-Ecto-sp13_S_contig15100:3868..4255Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15100 3869..4255 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15100.3856.1prot_Ecto-sp13_S_contig15100.3856.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15100 1156..4255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15100.3856.1

>prot_Ecto-sp13_S_contig15100.3856.1 ID=prot_Ecto-sp13_S_contig15100.3856.1|Name=mRNA_Ecto-sp13_S_contig15100.3856.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=461bp
MEASEPQRRGWLSWFRQSVWAPSQPEPVSATREGESAGTFFPFLKSSKLP
QEARQRPQPQPTNDSSRGPAAAEKLHMREGDRKGAVAEKMSARGVAADEE
ERWLERDLPLVWTFLREEEGWSFVDKQSGSTDVRGPTATAAGVDGGNGGV
AQQEEAGPMSQGQLPSYMRNNAALLRRYRRWLESSSSPMPPSKERFGDES
SGENGVVASGSNRGAGGGAMADGEAVVARAAALPPRMVSAHADDGSRRGG
RDEQQPQQPSGREPALSSGDVRTGHQDGEKRLSRDLPLIWTFMREKEGWG
YANGHSWHVCGPDATAGAGIGKQSARPIPQGRLPRYLLDNPELLEKYKRW
LAEVSKSSQPPREEAEEEEEEEEESDRGCVDNDTPGSHAAESGRPPSPPA
FLGAVASEMAAVGSAAFSAATQAPRVPAHDVAPSGSQQQGGRETPEQSQP
SRETSASANDS
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mRNA from alignment at Ecto-sp13_S_contig15100:1156..4255+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15100.3856.1 ID=mRNA_Ecto-sp13_S_contig15100.3856.1|Name=mRNA_Ecto-sp13_S_contig15100.3856.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3100bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15100:1156..4255+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGCTTCGGAGCCACAGCGCCGAGGCTGGCTCTCGTGGTTCCGCCA
GTCGGTGTGGGCTCCGTCTCAGCCCGAGCCAGTAAGCGCCACTAGAGAAG
GAGAATCAGCAGGGACTTTTTTCCCGTTTTTGAAGTCCAGCAAACTGCCA
CAAGAAGCCCGCCAACGACCACAGCCGCAACCTACCAACGACAGCAGCAG
GGGGCCTGCTGCCGCAGAAAAACTACACATGCGAGAAGGCGACAGAAAAG
GAGCCGTTGCAGAGAAAATGTCCGCGCGGGGGGTAGCTGCTGACGAAGAG
GAAAGGTGGCTAGAGAGGGATTTGCCTCTGGTCTGGACGTTCCTGCGAGA
GGAGGAGGGCTGGAGCTTCGTCGACAAGCAGAGCGGCAGCACCGATGTCC
GGGGGCCTACGGCAACGGCGGCTGGCGTGGATGGTGGGAACGGTGGTGTT
GCTCAGCAGGAAGAAGCCGGGCCGATGAGCCAGGGGCAGGTGGGTTCACA
CCTGTCGCATGATTTTTCATGATTTGAAACCGCCGCCGCCCGGCATTTCC
TCCTCGCGCCCGTTCGGTTGTAAGTCATCGTGTAGTCGCCAGTCAGCAGC
AGCGAGTACATCTTCAAACCGCTACTACAGCAGGTGCCCGTTGTCTTCGC
ATGTGTAGCGCTTTGCTGTCTCAAGTCATACGTTGTACTACGGGCTCATG
GCCCGACTCACGTTGGATCGCTTCGGTTTGGGTGGCATGCTGGCCGCTTT
TGAGGCGTACAACTCTAGACTGTTGCCTCTATCAGCAAGTTGTAGATGCT
TTGTATCGGTGGCGGTTACTGCCCAGCTGCAGCTAAATAACATTCCACGT
ACCTGTCCAGTGGTACGCCACGCTCTCTGTGCATGCAACGCGTTTGCAGG
GATTCCGTTGGCTGGCAGGGATTTTGCCTCTCCTTGCCGCCCCATGCGCC
TGTAATTTTGTCTTATTTTGTTTGCTTTGTGCTAGTATCATATCATCCGT
ATCATCGCGGGGGCGCTTCTGGTGTGTACACGTGGTCCCCGATAAAGCAT
TTGTCGTGCCCCAGATGACCTTCCGAGTCGTGTCAGGTTGGGACACTTGT
CCAACTCACCTCGGTCGAGCAGTAGCTTCAGCAGTCGTGATCATTCGCAG
TGCTGCTCGACGCGTGTCGTTGCAGACCGGTGTTCGAAACTCGACTTCTA
GACGACGAAGAGGATGCGTAAAATGCAACGATACTTTTCTGGAAAGCTCT
CGACGAGATGACTCCAACGCCGCAATTTTCCACACCGCCACTCTTTCTAC
TGTGGAGTAATCGAGCTTTGAGAATCGGTCCGGGGGGCGTGGTATCTTGT
GTCGTATACGGTAGCGTCAAGGTAGCCCCCCCCTACGCGGGTGTCCGCCA
CAAGCGCGTAGACATGTCTCCGTGGCACTTCTCACGCACATTCTTCAGAG
ACAGGACTGAGATTAATCAAACAGTTGAGGGCAGATCAGATCGCTTTGCA
GCTCGAGCTACACGGCAGCTCTTTCGCAGGTTGTGTCCCATGTGATCTGA
AAGATATGGGTAAGCGGGGTATGTTAGCTCCATGTTGACTTGAAAGACAA
AGTTGGTCCGAGTATTTTTCCATGGTCATGTGTAAGACAGGGTGGGCTAC
CCCATGATCGCTGTCCTCACTCCCCCCCCTGCCCCCCACCACCCTCTCAC
TGTGGTGGCCCCTTCTTCGGCGGTGCGTGACAGCTGCCATCCTATATGAG
GAACAACGCAGCACTCCTCCGAAGATACAGGCGCTGGTTGGAATCGTCTT
CAAGCCCGATGCCCCCTTCAAAGGAGAGGTTTGGCGATGAGAGCTCTGGC
GAAAATGGAGTAGTTGCTTCCGGGAGCAATCGTGGAGCGGGTGGTGGTGC
AATGGCCGACGGGGAGGCGGTGGTAGCGAGGGCCGCGGCTTTACCCCCCA
GGATGGTGTCGGCGCATGCTGACGATGGTAGCCGACGTGGAGGGCGCGAT
GAGCAGCAGCCACAGCAACCTAGCGGCAGAGAGCCTGCCCTGTCCAGTGG
CGACGTAAGAACAGGACATCAAGACGGCGAGAAGCGGCTGAGCAGGGACC
TACCCCTGATCTGGACGTTCATGCGAGAGAAGGAGGGCTGGGGCTATGCC
AACGGCCACAGCTGGCACGTCTGCGGGCCTGACGCAACGGCTGGGGCGGG
AATTGGCAAGCAAAGCGCTAGGCCAATACCTCAAGGACGGGTGAGGCGCT
AGTGTTGTTCTGTGTTGTTTGGGAAATAGGCGGGCTGTGGACATCATCCG
TCGCTGTCGGTCTCGGAGAGGTCACGTGTACTGAACATGGTGGCCTGGAG
GACGTAGGTCGTCGGCGCTAGTTCTCTCCACGGTGCTGTGTGTTAGACAT
GTGTGAGCTAGTACATGGCATTCGTGAATAGTTGCCTTGTTTTTCTCACA
ACAGGGTCGAGTTTTACTAGTCGGTTCGTAGCTGGCGGTGCCGCCATGCT
CTTGTCACTGGGCTAACTGCGCACCCTACCCCCAACGGTGCCATAGTAGC
CAAAATATTTCTCCTCTCGTGTTTGGCGGAGGGTGCGTTTCTGGTGCTAG
TCGTAGCTACAACTGCCGCTCGCTGATCTCTGTCCCCCTCCCCTTTCCGT
GTGGAAACCAACCTCGCTCTTCGCTTTGCGTGTGGAAATCAACCCCGCTG
CCGTCCACCCCAGCTGCCGAGATACCTGCTCGACAATCCGGAACTCTTGG
AGAAGTACAAGCGATGGTTGGCGGAGGTCTCGAAGTCGTCCCAACCGCCT
CGTGAAGAGGCGGAGGAGGAAGAGGAAGAGGAAGAGGAGAGCGATAGAGG
TTGTGTTGATAACGACACCCCCGGGAGCCACGCGGCAGAGAGCGGACGCC
CCCCCTCCCCCCCTGCCTTTCTTGGTGCTGTTGCGTCCGAGATGGCGGCT
GTAGGATCGGCGGCTTTTTCGGCGGCTACTCAAGCACCGCGGGTGCCTGC
TCATGATGTAGCGCCCTCCGGTTCCCAGCAACAGGGGGGCCGAGAGACAC
CAGAGCAAAGCCAGCCAAGTCGCGAAACTTCAGCCTCGGCAAATGATTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15100:1156..4255+

>mRNA_Ecto-sp13_S_contig15100.3856.1 ID=mRNA_Ecto-sp13_S_contig15100.3856.1|Name=mRNA_Ecto-sp13_S_contig15100.3856.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1383bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15100:1156..4255+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGCTTCGGAGCCACAGCGCCGAGGCTGGCTCTCGTGGTTCCGCCA
GTCGGTGTGGGCTCCGTCTCAGCCCGAGCCAGTAAGCGCCACTAGAGAAG
GAGAATCAGCAGGGACTTTTTTCCCGTTTTTGAAGTCCAGCAAACTGCCA
CAAGAAGCCCGCCAACGACCACAGCCGCAACCTACCAACGACAGCAGCAG
GGGGCCTGCTGCCGCAGAAAAACTACACATGCGAGAAGGCGACAGAAAAG
GAGCCGTTGCAGAGAAAATGTCCGCGCGGGGGGTAGCTGCTGACGAAGAG
GAAAGGTGGCTAGAGAGGGATTTGCCTCTGGTCTGGACGTTCCTGCGAGA
GGAGGAGGGCTGGAGCTTCGTCGACAAGCAGAGCGGCAGCACCGATGTCC
GGGGGCCTACGGCAACGGCGGCTGGCGTGGATGGTGGGAACGGTGGTGTT
GCTCAGCAGGAAGAAGCCGGGCCGATGAGCCAGGGGCAGCTGCCATCCTA
TATGAGGAACAACGCAGCACTCCTCCGAAGATACAGGCGCTGGTTGGAAT
CGTCTTCAAGCCCGATGCCCCCTTCAAAGGAGAGGTTTGGCGATGAGAGC
TCTGGCGAAAATGGAGTAGTTGCTTCCGGGAGCAATCGTGGAGCGGGTGG
TGGTGCAATGGCCGACGGGGAGGCGGTGGTAGCGAGGGCCGCGGCTTTAC
CCCCCAGGATGGTGTCGGCGCATGCTGACGATGGTAGCCGACGTGGAGGG
CGCGATGAGCAGCAGCCACAGCAACCTAGCGGCAGAGAGCCTGCCCTGTC
CAGTGGCGACGTAAGAACAGGACATCAAGACGGCGAGAAGCGGCTGAGCA
GGGACCTACCCCTGATCTGGACGTTCATGCGAGAGAAGGAGGGCTGGGGC
TATGCCAACGGCCACAGCTGGCACGTCTGCGGGCCTGACGCAACGGCTGG
GGCGGGAATTGGCAAGCAAAGCGCTAGGCCAATACCTCAAGGACGGCTGC
CGAGATACCTGCTCGACAATCCGGAACTCTTGGAGAAGTACAAGCGATGG
TTGGCGGAGGTCTCGAAGTCGTCCCAACCGCCTCGTGAAGAGGCGGAGGA
GGAAGAGGAAGAGGAAGAGGAGAGCGATAGAGGTTGTGTTGATAACGACA
CCCCCGGGAGCCACGCGGCAGAGAGCGGACGCCCCCCCTCCCCCCCTGCC
TTTCTTGGTGCTGTTGCGTCCGAGATGGCGGCTGTAGGATCGGCGGCTTT
TTCGGCGGCTACTCAAGCACCGCGGGTGCCTGCTCATGATGTAGCGCCCT
CCGGTTCCCAGCAACAGGGGGGCCGAGAGACACCAGAGCAAAGCCAGCCA
AGTCGCGAAACTTCAGCCTCGGCAAATGATTCG
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