mRNA_Ecto-sp13_S_contig1510.3854.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1510.3854.1
Unique NamemRNA_Ecto-sp13_S_contig1510.3854.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1510.3854.1 vs. uniprot
Match: A0A6H5LB71_9PHAE (PC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB71_9PHAE)

HSP 1 Score: 414 bits (1065), Expect = 1.170e-145
Identity = 221/232 (95.26%), Postives = 224/232 (96.55%), Query Frame = 1 
Query:    1 MQRFGVSARRRGFQSLLIPSSSSRKLSSFSSGPEHDDYWTAAKTEAQATPAYQQAAAHATAPTPSTPTATGGRWAQPGGPSPVTMPMGEAYKPSSSSNMYGGRSSTSFGRSSNTFNSDSGDFVPPPPTFDMQSSTHLSPVRQADVRSFKGRPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMADIDKEIFALEEQQRSLAAVDAHLLELAEQPFEVGDEGPDKQAP 696
            MQRFGVSARRRGF SLLI SSSSRKLSSFSSGPEHDD+WTAAKTEAQATPAYQQAAA+ATAPTP TPTATG RWAQPGGPSP TMPMGEAYKPSSSS MYGGRSS+S GRSSNTFNSDSGDFVPPPPTFDMQSSTHLSPVRQ DVRSFKGRPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMADIDKEIFALEEQQRSLAAVDAHLLELAEQPFEVGDEGPDKQAP
Sbjct:    1 MQRFGVSARRRGFPSLLIHSSSSRKLSSFSSGPEHDDFWTAAKTEAQATPAYQQAAANATAPTPWTPTATGDRWAQPGGPSPGTMPMGEAYKPSSSSKMYGGRSSSSNGRSSNTFNSDSGDFVPPPPTFDMQSSTHLSPVRQVDVRSFKGRPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMADIDKEIFALEEQQRSLAAVDAHLLELAEQPFEVGDEGPDKQAP 232
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BLAST of mRNA_Ecto-sp13_S_contig1510.3854.1 vs. uniprot
Match: D7FYS7_ECTSI (PC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS7_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 6.480e-60
Identity = 98/102 (96.08%), Postives = 98/102 (96.08%), Query Frame = 1 
Query:  391 MQSSTHLSPVRQADVRSFKGRPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMADIDKEIFALEEQQRSLAAVDAHLLELAEQPFEVGDEGPDKQAP 696
            MQSS HLSPVRQADVR FKGRPLVDIRQYFRGAEGQA PTKKGIALTIPQWRRLQEAMADIDKEIFALEEQQRSLAAVDAHLLELAEQPFEVGDE PDKQAP
Sbjct:    1 MQSSMHLSPVRQADVRLFKGRPLVDIRQYFRGAEGQAAPTKKGIALTIPQWRRLQEAMADIDKEIFALEEQQRSLAAVDAHLLELAEQPFEVGDEEPDKQAP 102
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BLAST of mRNA_Ecto-sp13_S_contig1510.3854.1 vs. uniprot
Match: C3ZA15_BRAFL (Activated RNA polymerase II transcriptional coactivator p15 (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZA15_BRAFL)

HSP 1 Score: 65.9 bits (159), Expect = 7.330e-11
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:  409 LSPVRQADVRSFKGRPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMADIDKEIFALE 597
            LS  R   VR FKG+ L+DIR+Y+  A G+  P KKGI+LT  QWRRL+EA+ DID++I  L+
Sbjct:    3 LSNKRYVSVREFKGKCLIDIREYY-DAGGELKPGKKGISLTTDQWRRLKEAVDDIDEKIADLD 64
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BLAST of mRNA_Ecto-sp13_S_contig1510.3854.1 vs. uniprot
Match: A8D8C5_ARTSF (RNA polymerase II transcriptional coactivator n=1 Tax=Artemia franciscana TaxID=6661 RepID=A8D8C5_ARTSF)

HSP 1 Score: 66.6 bits (161), Expect = 1.120e-10
Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:  388 DMQSSTHLSPVRQADVRSFKGRPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMADIDKEI 585
            D + +  L   R   VRSFKG+  VDIR+Y+  A G  +P KKGI+L++ QW+++QEAM ++D+ +
Sbjct:   40 DEEPTWTLDKKRFLKVRSFKGKTFVDIREYYEDASGNLMPGKKGISLSVQQWKKVQEAMDEVDEAL 105
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BLAST of mRNA_Ecto-sp13_S_contig1510.3854.1 vs. uniprot
Match: A0A6P4Z2T7_BRABE (Activated RNA polymerase II transcriptional coactivator p15 n=2 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4Z2T7_BRABE)

HSP 1 Score: 65.9 bits (159), Expect = 2.390e-10
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:  409 LSPVRQADVRSFKGRPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMADIDKEI 585
            LS  R   VR FKG+ L+DIR+Y+  A G+  P KKGI+LT  QWRRL+E+M DID++I
Sbjct:   50 LSNKRYVSVREFKGKCLIDIREYY-DAGGELKPGKKGISLTTDQWRRLKESMDDIDEKI 107
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BLAST of mRNA_Ecto-sp13_S_contig1510.3854.1 vs. uniprot
Match: UPI0016041207 (activated RNA polymerase II transcriptional coactivator p15-like isoform X2 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016041207)

HSP 1 Score: 65.9 bits (159), Expect = 2.450e-10
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:  409 LSPVRQADVRSFKGRPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMADIDKEIFALE 597
            LS  R   VR FKG+ L+DIR+Y+  A G+  P KKGI+LT  QWRRL+EA+ DID++I  L+
Sbjct:   51 LSNKRYVSVREFKGKCLIDIREYY-DAGGELKPGKKGISLTTDQWRRLKEAVDDIDEKIADLD 112
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BLAST of mRNA_Ecto-sp13_S_contig1510.3854.1 vs. uniprot
Match: A0A1X7U2Q5_AMPQE (PC4 domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7U2Q5_AMPQE)

HSP 1 Score: 65.1 bits (157), Expect = 4.640e-10
Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:  388 DMQSSTHLSPVRQADVRSFKGRPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMADIDKEI 585
            D +    LS  R  +VR+FKGR ++DIR+Y+   +G+  P KKGI+L++ QW +L+EAM  ID+ I
Sbjct:   44 DTEELIPLSAKRFVNVRTFKGRIMIDIREYYVNDDGENRPGKKGISLSVDQWEKLKEAMETIDERI 109
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BLAST of mRNA_Ecto-sp13_S_contig1510.3854.1 vs. uniprot
Match: UPI001ED87873 (activated RNA polymerase II transcriptional coactivator p15 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED87873)

HSP 1 Score: 64.7 bits (156), Expect = 6.020e-10
Identity = 29/62 (46.77%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:  400 STHLSPVRQADVRSFKGRPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMADIDKEI 585
            S HL  ++ A VR+F+G+  VDIR+Y++ ++G+  P KKGI+L++ QWRR++E M +ID+ I
Sbjct:   46 SWHLEKMKYAKVRTFQGKVYVDIREYYQ-SDGKMKPGKKGISLSVDQWRRIKELMPEIDEAI 106
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BLAST of mRNA_Ecto-sp13_S_contig1510.3854.1 vs. uniprot
Match: A0A8C4ZD74_GADMO (Activated RNA polymerase II transcriptional coactivator p15 n=2 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4ZD74_GADMO)

HSP 1 Score: 65.1 bits (157), Expect = 6.620e-10
Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:  388 DMQSSTHLSPVRQADVRSFKGRPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMADIDKEI 585
            D+ S + +  +R   VR FKG+ LVDIR+Y+   +G+  P KKGI+L   QW +L+E ++DID+ +
Sbjct:   59 DLLSVSQIGKMRYVSVRDFKGKTLVDIREYWMNPDGEMKPGKKGISLNAEQWSQLKEQISDIDEAV 124
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BLAST of mRNA_Ecto-sp13_S_contig1510.3854.1 vs. uniprot
Match: A0A8H8CPF0_PSICU (PC4 domain-containing protein n=1 Tax=Psilocybe cubensis TaxID=181762 RepID=A0A8H8CPF0_PSICU)

HSP 1 Score: 65.5 bits (158), Expect = 8.400e-10
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:  409 LSPVRQADVRSFKGRPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMADIDK 579
            L   ++A VRSFKG PL+DIR+++ GA+G   P KKGI+LTI QW+ L++ M+ IDK
Sbjct:   90 LGKKKRATVRSFKGVPLIDIREFY-GADGDEKPGKKGISLTIEQWQSLRDGMSTIDK 145
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1510.3854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LB71_9PHAE1.170e-14595.26PC4 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYS7_ECTSI6.480e-6096.08PC4 domain-containing protein n=1 Tax=Ectocarpus s... [more]
C3ZA15_BRAFL7.330e-1153.97Activated RNA polymerase II transcriptional coacti... [more]
A8D8C5_ARTSF1.120e-1043.94RNA polymerase II transcriptional coactivator n=1 ... [more]
A0A6P4Z2T7_BRABE2.390e-1055.93Activated RNA polymerase II transcriptional coacti... [more]
UPI00160412072.450e-1053.97activated RNA polymerase II transcriptional coacti... [more]
A0A1X7U2Q5_AMPQE4.640e-1045.45PC4 domain-containing protein n=1 Tax=Amphimedon q... [more]
UPI001ED878736.020e-1046.77activated RNA polymerase II transcriptional coacti... [more]
A0A8C4ZD74_GADMO6.620e-1042.42Activated RNA polymerase II transcriptional coacti... [more]
A0A8H8CPF0_PSICU8.400e-1054.39PC4 domain-containing protein n=1 Tax=Psilocybe cu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1510contigEcto-sp13_S_contig1510:8661..9359 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score65.5
Seed ortholog evalue3.8e-08
Seed eggNOG ortholog27923.ML270513a-PA
Preferred nameSUB1
Model size699
Hectar predicted targeting categorymitochondrion
GOsGO:0000726,GO:0000981,GO:0001205,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003697,GO:0003700,GO:0003705,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005730,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006351,GO:0006352,GO:0006353,GO:0006355,GO:0006357,GO:0006359,GO:0006366,GO:0006369,GO:0006383,GO:0006384,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0007329,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009371,GO:0009373,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010721,GO:0010948,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019236,GO:0019438,GO:0022603,GO:0022607,GO:0023052,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031334,GO:0031974,GO:0031981,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033554,GO:0034243,GO:0034306,GO:0034307,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0042173,GO:0042174,GO:0042221,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043618,GO:0043620,GO:0043900,GO:0043901,GO:0043933,GO:0043937,GO:0043939,GO:0043940,GO:0043942,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045786,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0045945,GO:0046019,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051445,GO:0051447,GO:0051716,GO:0051726,GO:0060255,GO:0060260,GO:0060261,GO:0060284,GO:0060395,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070887,GO:0070897,GO:0070898,GO:0071310,GO:0071444,GO:0071704,GO:0071824,GO:0071840,GO:0075297,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901522,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2000142,GO:2000144,GO:2000241,GO:2000242,GO:2001141
Exons1
EggNOG free text desc.positive regulation of transcription initiation from RNA polymerase II promoter
EggNOG OGsKOG2712@1,KOG2712@2759
Ec32 ortholog descriptionssDNA-binding transcriptional regulator
Ec32 orthologEc-19_002360.1
Cds size699
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462804.1609476-CDS-Ecto-sp13_S_contig1510:8660..93591681462804.1609476-CDS-Ecto-sp13_S_contig1510:8660..9359Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1510 8661..9359 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1510.3854.1prot_Ecto-sp13_S_contig1510.3854.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1510 8661..9359 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1510.3854.1

>prot_Ecto-sp13_S_contig1510.3854.1 ID=prot_Ecto-sp13_S_contig1510.3854.1|Name=mRNA_Ecto-sp13_S_contig1510.3854.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=233bp
MQRFGVSARRRGFQSLLIPSSSSRKLSSFSSGPEHDDYWTAAKTEAQATP
AYQQAAAHATAPTPSTPTATGGRWAQPGGPSPVTMPMGEAYKPSSSSNMY
GGRSSTSFGRSSNTFNSDSGDFVPPPPTFDMQSSTHLSPVRQADVRSFKG
RPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMADIDKEIFALEE
QQRSLAAVDAHLLELAEQPFEVGDEGPDKQAP*
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mRNA from alignment at Ecto-sp13_S_contig1510:8661..9359-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1510.3854.1 ID=mRNA_Ecto-sp13_S_contig1510.3854.1|Name=mRNA_Ecto-sp13_S_contig1510.3854.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1510:8661..9359- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGAGGTTCGGAGTATCCGCGAGAAGGCGTGGGTTTCAGTCTCTCCT
TATTCCCAGCAGTTCATCGAGAAAATTGTCCAGCTTCTCGTCCGGCCCAG
AGCATGATGACTATTGGACTGCTGCGAAAACTGAGGCACAAGCAACACCA
GCCTACCAACAAGCTGCGGCTCACGCCACCGCTCCCACTCCTTCGACACC
GACTGCTACTGGAGGCCGGTGGGCGCAGCCTGGAGGGCCGAGCCCGGTAA
CGATGCCAATGGGTGAAGCATACAAGCCCTCAAGCAGCAGTAACATGTAT
GGAGGCCGCAGCAGCACCTCTTTCGGCCGTTCGAGCAATACATTCAACTC
GGACTCGGGCGATTTCGTGCCCCCCCCACCCACTTTCGATATGCAGAGCT
CGACGCACCTGTCTCCCGTGAGGCAGGCTGATGTGCGCTCGTTTAAGGGC
AGACCTCTGGTGGACATCCGGCAATATTTCAGGGGCGCCGAAGGACAGGC
TGTCCCTACGAAGAAGGGCATTGCACTCACAATACCTCAGTGGAGACGCT
TGCAAGAAGCCATGGCCGACATCGACAAGGAGATCTTCGCGCTTGAGGAA
CAGCAACGCTCGTTGGCCGCTGTCGACGCGCATCTTCTAGAGCTTGCAGA
ACAGCCTTTTGAGGTTGGAGATGAGGGGCCTGACAAACAGGCACCATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1510:8661..9359-

>mRNA_Ecto-sp13_S_contig1510.3854.1 ID=mRNA_Ecto-sp13_S_contig1510.3854.1|Name=mRNA_Ecto-sp13_S_contig1510.3854.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1510:8661..9359- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGAGGTTCGGAGTATCCGCGAGAAGGCGTGGGTTTCAGTCTCTCCT
TATTCCCAGCAGTTCATCGAGAAAATTGTCCAGCTTCTCGTCCGGCCCAG
AGCATGATGACTATTGGACTGCTGCGAAAACTGAGGCACAAGCAACACCA
GCCTACCAACAAGCTGCGGCTCACGCCACCGCTCCCACTCCTTCGACACC
GACTGCTACTGGAGGCCGGTGGGCGCAGCCTGGAGGGCCGAGCCCGGTAA
CGATGCCAATGGGTGAAGCATACAAGCCCTCAAGCAGCAGTAACATGTAT
GGAGGCCGCAGCAGCACCTCTTTCGGCCGTTCGAGCAATACATTCAACTC
GGACTCGGGCGATTTCGTGCCCCCCCCACCCACTTTCGATATGCAGAGCT
CGACGCACCTGTCTCCCGTGAGGCAGGCTGATGTGCGCTCGTTTAAGGGC
AGACCTCTGGTGGACATCCGGCAATATTTCAGGGGCGCCGAAGGACAGGC
TGTCCCTACGAAGAAGGGCATTGCACTCACAATACCTCAGTGGAGACGCT
TGCAAGAAGCCATGGCCGACATCGACAAGGAGATCTTCGCGCTTGAGGAA
CAGCAACGCTCGTTGGCCGCTGTCGACGCGCATCTTCTAGAGCTTGCAGA
ACAGCCTTTTGAGGTTGGAGATGAGGGGCCTGACAAACAGGCACCATAG
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