mRNA_Ecto-sp13_S_contig1510.3853.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1510.3853.1
Unique NamemRNA_Ecto-sp13_S_contig1510.3853.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1510.3853.1 vs. uniprot
Match: D7FYS6_ECTSI (Elongation of fatty acids protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYS6_ECTSI)

HSP 1 Score: 444 bits (1142), Expect = 6.750e-156
Identity = 214/215 (99.53%), Postives = 215/215 (100.00%), Query Frame = 1
Query:    1 MVTVGPKVMADMSPIDSYPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPVLPCAPFDAENPPAANLLWLFYVSKVLDFMDTIFIVMKKSWRQLSFLHVYHHCTIFLFYWLNVNAGYDGDVYLTIVLNGFIHTVMYTYYFVSMHTKDIWWKKYLTLMQMIQFVCMTTQALYLLTTGCTSYPPRIVVVYAGYILSLLFLFAQFYVNSYTKKPTAKNA 645
            MVTVGPKVMADMSPIDSYPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPVLPCAPFDAENPPAANLLWLFYVSKVLDFMDTIFIV+KKSWRQLSFLHVYHHCTIFLFYWLNVNAGYDGDVYLTIVLNGFIHTVMYTYYFVSMHTKDIWWKKYLTLMQMIQFVCMTTQALYLLTTGCTSYPPRIVVVYAGYILSLLFLFAQFYVNSYTKKPTAKNA
Sbjct:    1 MVTVGPKVMADMSPIDSYPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPVLPCAPFDAENPPAANLLWLFYVSKVLDFMDTIFIVLKKSWRQLSFLHVYHHCTIFLFYWLNVNAGYDGDVYLTIVLNGFIHTVMYTYYFVSMHTKDIWWKKYLTLMQMIQFVCMTTQALYLLTTGCTSYPPRIVVVYAGYILSLLFLFAQFYVNSYTKKPTAKNA 215          
BLAST of mRNA_Ecto-sp13_S_contig1510.3853.1 vs. uniprot
Match: A0A835Z8H5_9STRA (Elongation of fatty acids protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8H5_9STRA)

HSP 1 Score: 315 bits (808), Expect = 2.970e-104
Identity = 144/214 (67.29%), Postives = 172/214 (80.37%), Query Frame = 1
Query:    4 VTVGPKVMADMSPIDS--YPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPVLPCAPFDAENPPAANLLWLFYVSKVLDFMDTIFIVMKKSWRQLSFLHVYHHCTIFLFYWLNVNAGYDGDVYLTIVLNGFIHTVMYTYYFVSMHTKDIWWKKYLTLMQMIQFVCMTTQALYLLTTGCTSYPPRIVVVYAGYILSLLFLFAQFYVNSYTKKPTAK 639
            + VG  VM  + P+D+  YP RF+YN+VQI+LCSYMC+EA +IA+RN Y +LPC PF+ +NPP  N+LWLFY+SK+LDF DT+FIV++K W+QLSFLHVYHH TIFLFYWLN+N GYDGD+YLTIVLNGFIHTVMYTYYFVSMHT  IWWK  LT MQM+QFV M +QALYLLTTGCT+YPPR+   Y  YI SLL LF  F++ SY  K   K
Sbjct:   52 IFVGSFVMKFVQPLDAPTYPFRFIYNIVQIMLCSYMCLEAGIIAHRNNYGILPCVPFNVQNPPVGNVLWLFYISKILDFADTVFIVLRKKWKQLSFLHVYHHTTIFLFYWLNINVGYDGDIYLTIVLNGFIHTVMYTYYFVSMHTDKIWWKSSLTAMQMVQFVTMISQALYLLTTGCTTYPPRVTQAYCLYIFSLLILFGNFFIKSYMPKQGGK 265          
BLAST of mRNA_Ecto-sp13_S_contig1510.3853.1 vs. uniprot
Match: A0A6U1Q8V8_9STRA (Elongation of fatty acids protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1Q8V8_9STRA)

HSP 1 Score: 302 bits (774), Expect = 6.110e-99
Identity = 140/195 (71.79%), Postives = 164/195 (84.10%), Query Frame = 1
Query:   43 IDSYPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPVLPCAPFDAENPPAANLLWLFYVSKVLDFMDTIFIVMKKSWRQLSFLHVYHHCTIFLFYWLNVNAGYDGDVYLTIVLNGFIHTVMYTYYFVSMHTKDIWWKKYLTLMQMIQFVCMTTQALYLLTTGCTSYPPRIVVVYAGYILSLLFLFAQFYVNSYTKK 627
            I  YPV+F+YN+VQ++LCSYM +EA M+A+R GY  LPC PF+A+NPP A +L++FY+SK+LDFMDT FI++ K W+QLSFLHVYHH +IFLFYWLN+N GYDGDVYLTIVLNGFIHTVMYTYYFVS+HTKDIWWK  LT+ QMIQFV M  QA YLL TGC SYPPRIV+ Y  YILSLL LFA F+V SY KK
Sbjct:   76 IKLYPVQFLYNIVQVMLCSYMAIEAGMVAFRQGYTCLPCEPFNAKNPPVAEVLYIFYLSKILDFMDTFFIIIGKKWKQLSFLHVYHHTSIFLFYWLNINVGYDGDVYLTIVLNGFIHTVMYTYYFVSLHTKDIWWKSSLTMCQMIQFVTMNAQAGYLLLTGCKSYPPRIVLSYLVYILSLLVLFANFFVQSYLKK 270          
BLAST of mRNA_Ecto-sp13_S_contig1510.3853.1 vs. uniprot
Match: A0A7S4JGP6_9STRA (Elongation of fatty acids protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JGP6_9STRA)

HSP 1 Score: 299 bits (765), Expect = 1.010e-97
Identity = 147/223 (65.92%), Postives = 169/223 (75.78%), Query Frame = 1
Query:    4 VTVGPKVM-ADMSPIDSYPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPVLPCAPFDAENPPAANLLWLFYVSKVLDFMDTIFIVMKKSWRQLSFLHVYHHCTIFLFYWLNVNAGYDGDVYLTIVLNGFIHTVMYTYYFVSMHTKD--------IWWKKYLTLMQMIQFVCMTTQALYLLTTGCTSYPPRIVVVYAGYILSLLFLFAQFYVNSYTKKPTAKNA 645
            V +G  VM + ++ +D YP++F YNV QI+LC+YM +E F++AYRNGY  LPC   D +NPP ANLLWLFYVSKV DF DTIFIV+ K WRQLSFLHVYHH TIFLFYWLN +  +DGD+YLTIVLNGFIHTVMYTYYF+ MHTKD        IWWK  LTLMQ+IQF+ M +QA YLL TGC     R+V VY  YILSL FLFAQFYV SYTKKP  K A
Sbjct:   51 VVIGSAVMKSGVAAMDPYPIKFFYNVSQIMLCAYMTIEGFLLAYRNGYTCLPCIDIDTKNPPLANLLWLFYVSKVWDFWDTIFIVLGKKWRQLSFLHVYHHTTIFLFYWLNAHVNFDGDIYLTIVLNGFIHTVMYTYYFICMHTKDPKTGKSLPIWWKSSLTLMQLIQFITMMSQATYLLVTGCQKTGLRVVSVYFVYILSLFFLFAQFYVASYTKKPKKKAA 273          
BLAST of mRNA_Ecto-sp13_S_contig1510.3853.1 vs. uniprot
Match: A0A7R9WGN6_9STRA (Elongation of fatty acids protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WGN6_9STRA)

HSP 1 Score: 297 bits (761), Expect = 3.930e-97
Identity = 145/216 (67.13%), Postives = 167/216 (77.31%), Query Frame = 1
Query:    4 VTVGPKVM-ADMSPIDSYPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPVLPCAPFDAENPPAANLLWLFYVSKVLDFMDTIFIVMKKSWRQLSFLHVYHHCTIFLFYWLNVNAGYDGDVYLTIVLNGFIHTVMYTYYFVSMHTKD--------IWWKKYLTLMQMIQFVCMTTQALYLLTTGCTSYPPRIVVVYAGYILSLLFLFAQFYVNSYTK 624
            V +G  VM + ++ +D YP++F+YNV QI+LC+YM +EAF++AYRNGY  LPC   D ENPP ANLLWLFY+SKV DF DT+FIV+ K WRQLSFLHVYHH TIFLFYWLN +  YDGD+YLTI+LNGFIHTVMYTYYF+ MHTKD        IWWK YLTLMQMIQFV M +QA YLL T C     R+V VY  YILSL FLFAQFYV SYTK
Sbjct:   51 VVIGSAVMKSGVAAMDPYPIKFIYNVSQIMLCAYMTIEAFLLAYRNGYTCLPCNNVDTENPPLANLLWLFYISKVWDFWDTVFIVIGKKWRQLSFLHVYHHTTIFLFYWLNSHVNYDGDIYLTILLNGFIHTVMYTYYFICMHTKDPKTGKSLPIWWKSYLTLMQMIQFVTMMSQATYLLGTQCEKTSLRVVFVYLVYILSLFFLFAQFYVQSYTK 266          
BLAST of mRNA_Ecto-sp13_S_contig1510.3853.1 vs. uniprot
Match: A0A1S7C7Q3_9STRA (Elongation of fatty acids protein n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A1S7C7Q3_9STRA)

HSP 1 Score: 297 bits (760), Expect = 6.380e-97
Identity = 139/221 (62.90%), Postives = 167/221 (75.57%), Query Frame = 1
Query:    1 MVTVGPKVMADMSPIDSYPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPVLPCAPFDAENPPAANLLWLFYVSKVLDFMDTIFIVMKKSWRQLSFLHVYHHCTIFLFYWLNVNAGYDGDVYLTIVLNGFIHTVMYTYYFVSMHTKDIWWKKYLTLMQMIQFVCMTTQALYLLTTGCTSYPPRIVVVYAGYILSLLFLFAQFYVNSYT------KKPTAKNA 645
            +V VG  +M +  P+  Y ++F YN+ Q+ LCSYMC+EA + AYRN Y  LPC PF+A NPP A LLWLFYVSKV DF DT+FI++ K W QLSFLHVYHH TIFL YWLN+NAGYDGD++LT++LNG IHTVMYTYYF+SMHTKDIWWKKYLTL Q+IQF+ M  QA+YLL  GC  + P+I  +Y GYILSLL LF  FY  SY+      KKP +K A
Sbjct:   56 IVFVGSAMMKNAQPVKLYGLQFFYNISQVALCSYMCIEAAIQAYRNNYTFLPCEPFNATNPPIAPLLWLFYVSKVFDFADTVFIILGKKWNQLSFLHVYHHVTIFLVYWLNLNAGYDGDIFLTVILNGAIHTVMYTYYFLSMHTKDIWWKKYLTLFQIIQFLTMNAQAIYLLCVGCKGFSPQITKLYLGYILSLLVLFLNFYFKSYSGVKPNGKKPVSKKA 276          
BLAST of mRNA_Ecto-sp13_S_contig1510.3853.1 vs. uniprot
Match: L1IAX0_GUITC (Elongation of fatty acids protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IAX0_GUITC)

HSP 1 Score: 292 bits (748), Expect = 4.180e-95
Identity = 136/217 (62.67%), Postives = 170/217 (78.34%), Query Frame = 1
Query:    1 MVTVGPKVMADMSPID--SYPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPVLPCAPFDAENPPAANLLWLFYVSKVLDFMDTIFIVMKKSWRQLSFLHVYHHCTIFLFYWLNVNAGYDGDVYLTIVLNGFIHTVMYTYYFVSMHTKDIWWKKYLTLMQMIQFVCMTTQALYLLTTGCTSYPPRIVVVYAGYILSLLFLFAQFYVNSYTKKPTAKNA 645
            +V VG  VM     +D  +YP+RFVYN++Q++LCSYM +EA ++AYR+ Y ++PC PF  ENPP A +LWLFY+SKVLDFMDT FIV+ K W QLSFLHVYHH TIF+ YW+NVN GYDGD+YLTIVLNGFIHTVMYTYYFVSMHTKDIWWKKYLT+MQMIQF+ M  QA++LL + C ++P ++  +Y  YI+SL  LF  F++ SY   P +K A
Sbjct:   58 LVIVGRIVMIPFRSLDKLTYPIRFVYNILQVMLCSYMTLEAGILAYRHNYNLVPCNPFKTENPPIAPVLWLFYISKVLDFMDTFFIVLGKKWEQLSFLHVYHHLTIFMIYWMNVNVGYDGDIYLTIVLNGFIHTVMYTYYFVSMHTKDIWWKKYLTMMQMIQFITMNGQAIWLLQSNCQTFPRKVTQLYLVYIMSLFALFLNFFIRSYVS-PKSKKA 273          
BLAST of mRNA_Ecto-sp13_S_contig1510.3853.1 vs. uniprot
Match: W7TSM8_9STRA (Elongation of fatty acids protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSM8_9STRA)

HSP 1 Score: 293 bits (750), Expect = 7.550e-95
Identity = 138/230 (60.00%), Postives = 167/230 (72.61%), Query Frame = 1
Query:    4 VTVGPKVMADMSPIDSYPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPVLPCAPFDAENPPAANLLWLFYVSKVLDFMDTIFIVMKKSWRQLSFLHVYHHCTIFLFYWLNVNAGYDGDVYLTIVLNGFIHTVMYTYYFVSMHTKDIWWKKYLTLMQMIQFVCMTTQALYLLTTGCTSYPPRIVVVYAGYILSLLFLFAQFYVNSYT------KKPTAKNA*YSIVELRKT 675
            V VG  VM D  P+  Y ++F YN+ Q+ LCSYMC+EA + AYRN Y +LPC PF+  NPP   LLWLFY+SK+ DF DT+FI++ K W QLSFLHVYHH TIFL YWLN+NAGYDGD++LT++LNG IHTVMY YYF+SMHTKDIWWKKYLTL Q+IQF+ M  QA+Y+L  GC S+P +I  +Y GYILSLL LF  FY  +Y+      KKP   N    I  LR T
Sbjct:   69 VFVGSIVMKDAQPVKLYGLQFFYNISQVALCSYMCIEAVIQAYRNNYTLLPCEPFNTTNPPLGPLLWLFYISKIFDFADTVFIILGKKWSQLSFLHVYHHVTIFLVYWLNLNAGYDGDIFLTVILNGAIHTVMYAYYFLSMHTKDIWWKKYLTLFQIIQFLTMNAQAIYILGVGCKSFPTQITKLYLGYILSLLVLFLNFYFKTYSSPKPNGKKPKKANYLIEIDILRST 298          
BLAST of mRNA_Ecto-sp13_S_contig1510.3853.1 vs. uniprot
Match: A0A0G4I034_9ALVE (Elongation of fatty acids protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I034_9ALVE)

HSP 1 Score: 290 bits (742), Expect = 6.790e-94
Identity = 127/193 (65.80%), Postives = 156/193 (80.83%), Query Frame = 1
Query:   49 SYPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPVLPCAPFDAENPPAANLLWLFYVSKVLDFMDTIFIVMKKSWRQLSFLHVYHHCTIFLFYWLNVNAGYDGDVYLTIVLNGFIHTVMYTYYFVSMHTKDIWWKKYLTLMQMIQFVCMTTQALYLLTTGCTSYPPRIVVVYAGYILSLLFLFAQFYVNSYTKK 627
            +YP RFVYNV Q++LCSYM +EA ++AYRN Y ++PC  F+ +NPP ANLLW+FY+SK+ DF DTIFI++ K W+QLSFLHVYHH TIF  YW+N+  GYDGDVYLTIVLNGFIH VMYTYYF+SMHTKDIWWK  LT MQM+QF+CM  QA ++L  GC  YPPR+  +Y  YI+SL  LFAQF+V +Y+KK
Sbjct:   92 TYPFRFVYNVAQVMLCSYMTIEAVLLAYRNDYGLVPCVKFNPQNPPVANLLWMFYISKIFDFADTIFIILGKKWQQLSFLHVYHHATIFSIYWVNLRLGYDGDVYLTIVLNGFIHAVMYTYYFLSMHTKDIWWKSKLTSMQMLQFICMNVQASWMLLNGCQQYPPRLTAIYLVYIMSLFLLFAQFFVRTYSKK 284          
BLAST of mRNA_Ecto-sp13_S_contig1510.3853.1 vs. uniprot
Match: A0A6T8G4U0_HEMAN (Elongation of fatty acids protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8G4U0_HEMAN)

HSP 1 Score: 286 bits (732), Expect = 9.050e-93
Identity = 128/208 (61.54%), Postives = 163/208 (78.37%), Query Frame = 1
Query:    4 VTVGPKVMADMSPID--SYPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPVLPCAPFDAENPPAANLLWLFYVSKVLDFMDTIFIVMKKSWRQLSFLHVYHHCTIFLFYWLNVNAGYDGDVYLTIVLNGFIHTVMYTYYFVSMHTKDIWWKKYLTLMQMIQFVCMTTQALYLLTTGCTSYPPRIVVVYAGYILSLLFLFAQFYVNSYT 621
            V  G  VM    P+D  +YP+RF YN+VQ++LCSYM +EA  +AYRNGY + PC PFD ++PP   LLWLFYVSK+LDF+DT  I++ K W QLSFLHVYHH TIF+ YW+NVN GYDGD+YLTIVLNG IHT+MYTYYFVSMH++DIWWKKYLT+ QMIQF+CM +QA+ L+   C ++P R+ + Y  YI++L FLF +F++ SYT
Sbjct:   53 VLAGRIVMTVFHPMDRLTYPIRFCYNIVQMMLCSYMTIEAAALAYRNGYNMYPCNPFDTKSPPLGPLLWLFYVSKILDFVDTAVIILGKKWGQLSFLHVYHHATIFIMYWVNVNVGYDGDIYLTIVLNGVIHTIMYTYYFVSMHSRDIWWKKYLTMCQMIQFICMNSQAILLIKDHCKTFPARVTMTYLFYIITLFFLFLKFFITSYT 260          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1510.3853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYS6_ECTSI6.750e-15699.53Elongation of fatty acids protein n=2 Tax=Ectocarp... [more]
A0A835Z8H5_9STRA2.970e-10467.29Elongation of fatty acids protein n=1 Tax=Tribonem... [more]
A0A6U1Q8V8_9STRA6.110e-9971.79Elongation of fatty acids protein n=1 Tax=Fibrocap... [more]
A0A7S4JGP6_9STRA1.010e-9765.92Elongation of fatty acids protein n=2 Tax=Odontell... [more]
A0A7R9WGN6_9STRA3.930e-9767.13Elongation of fatty acids protein n=1 Tax=Pseudict... [more]
A0A1S7C7Q3_9STRA6.380e-9762.90Elongation of fatty acids protein n=1 Tax=Nannochl... [more]
L1IAX0_GUITC4.180e-9562.67Elongation of fatty acids protein n=2 Tax=Guillard... [more]
W7TSM8_9STRA7.550e-9560.00Elongation of fatty acids protein n=2 Tax=Monodops... [more]
A0A0G4I034_9ALVE6.790e-9465.80Elongation of fatty acids protein n=1 Tax=Chromera... [more]
A0A6T8G4U0_HEMAN9.050e-9361.54Elongation of fatty acids protein n=1 Tax=Hemiselm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1510contigEcto-sp13_S_contig1510:908..4078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score291.6
Seed ortholog evalue3.1e-76
Seed eggNOG ortholog55529.EKX33396
Model size1008
KEGG rclassRC00004,RC02888,RC02997
KEGG koko:K10249
KEGG ReactionR09419,R10825
KEGG Pathwayko00062,ko01110,map00062,map01110
KEGG ModuleM00415
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.fatty acid elongation, saturated fatty acid
EggNOG OGsKOG3071@1,KOG3071@2759
Ec32 ortholog descriptionFatty acid elongase
Ec32 orthologEc-19_002350.1
EC2.3.1.199
Cds size648
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1510.3853.1prot_Ecto-sp13_S_contig1510.3853.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1510 1268..4078 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462804.053052-UTR-Ecto-sp13_S_contig1510:907..12671681462804.053052-UTR-Ecto-sp13_S_contig1510:907..1267Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1510 908..1267 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462804.0704663-CDS-Ecto-sp13_S_contig1510:1267..13911681462804.0704663-CDS-Ecto-sp13_S_contig1510:1267..1391Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1510 1268..1391 -
1681462804.0828867-CDS-Ecto-sp13_S_contig1510:1696..17491681462804.0828867-CDS-Ecto-sp13_S_contig1510:1696..1749Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1510 1697..1749 -
1681462804.0933182-CDS-Ecto-sp13_S_contig1510:2143..22961681462804.0933182-CDS-Ecto-sp13_S_contig1510:2143..2296Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1510 2144..2296 -
1681462804.1090183-CDS-Ecto-sp13_S_contig1510:2680..27761681462804.1090183-CDS-Ecto-sp13_S_contig1510:2680..2776Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1510 2681..2776 -
1681462804.1264825-CDS-Ecto-sp13_S_contig1510:3233..33711681462804.1264825-CDS-Ecto-sp13_S_contig1510:3233..3371Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1510 3234..3371 -
1681462804.134512-CDS-Ecto-sp13_S_contig1510:3994..40781681462804.134512-CDS-Ecto-sp13_S_contig1510:3994..4078Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1510 3995..4078 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1510.3853.1

>prot_Ecto-sp13_S_contig1510.3853.1 ID=prot_Ecto-sp13_S_contig1510.3853.1|Name=mRNA_Ecto-sp13_S_contig1510.3853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=216bp
MVTVGPKVMADMSPIDSYPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPV
LPCAPFDAENPPAANLLWLFYVSKVLDFMDTIFIVMKKSWRQLSFLHVYH
HCTIFLFYWLNVNAGYDGDVYLTIVLNGFIHTVMYTYYFVSMHTKDIWWK
KYLTLMQMIQFVCMTTQALYLLTTGCTSYPPRIVVVYAGYILSLLFLFAQ
FYVNSYTKKPTAKNA*
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mRNA from alignment at Ecto-sp13_S_contig1510:908..4078-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1510.3853.1 ID=mRNA_Ecto-sp13_S_contig1510.3853.1|Name=mRNA_Ecto-sp13_S_contig1510.3853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1510:908..4078- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGACGGTCGGTCCCAAGGTCATGGCCGACATGAGCCCTATCGACAG CTACCCTGTCCGGTTCGTCTACAACGTCGTGCAGGTTTGTCAGCAACTGC TGTCAGCGCGAAGGCGCGAATGTGTAGTTAGCTTCTTCTATTCCGGAGCG ACTACAGTCTATGCTGTCGGTACCTGGTCTCGTATGAAACACCAAGTCAT CGGCGAGCACTTAGCAGTAGTACGCGTGTTATACATACGTGAATCGAACG AACTTTCCGAGTGTCGAACATATCCTGGTCGCCGCAGCGTCTTGCTAGCA TAACAAGGAAGCTGGCTCACCCCTAGATTGTGCTCATCAGTTTGGTGGTA TCATCACATCCATGCACGCAACACAGTAGTGATGTACAATTCGCGACCGT GAACTTTGCACTAGTTGCTGCGATATTTGCTCTCACTCATCCCGCACACA CGCCGAAGACCAAATTCAGTTCGTACACGAATTTTGATGTACCCGTTTGT TTTCCCGCAATAAATAGCAGATGCACATGAGGCTGCAGATGTACCTGGTG ATTTTTTTTGTGGTTGAGCACGAGGGGAAAAAACAGATTCACCCCTTCGA AATCCCCGTGCCTTTGAAAAGACATGTTGTTCCATGGTTGAGGTGCTGTT TCACTCGCCAAACGCTCTACTCTCTTGTACCTCCGCACTCCACTCCACCC TGCGCAGATTATCCTGTGCTCGTACATGTGCGTCGAGGCCTTCATGATCG CGTACCGCAACGGATACCCCGTCCTCCCTTGCGCCCCCTTCGACGCCGAG AACCCCCCCGCGGCTAACTTGCTTTGGCTGTTTTACGTCTCCAAGGTGTG TGTTTGTCGAGCGTGGGGTGTGCACGACCATTAGAGCGCCCGTCGAAACA TGTTTTTGCGTTGTACTCCCTGCCCGCCCACTGCTATCATATTAGTGTTC TTGTTGCCAAATGCCCGAATCGCTGGCTGTGCCCTTTTGACTGCTGTTGA CTACCGTCTTTCTCAAGTGTGTGTTTCTTGGCCACGTCTGTGTGCTACGG TCCAGTAGACACACCAGCAAGGCAAGAGTTCAGTACACCAACGTAACTGC TCCATGGGCGGGGGTGCTTCCGCAGGTGGTCAGTTACTACAACACCGCTC GTCGATTCATCGCCGCCGGTTCTTCTTGCTCTCATTTTCTCGTGGAATTT TGACTCGCATGATCCGGTGCGTTTGTTGCACCTGCACATACCTTTGTTCT CTCCCACGGTTGTCTTGAATTTTTGTATCGATGCATACGTGTTACCCAAC AGGTCCTTGACTTCATGGATACCATTTTCATCGTCATGAAGAAGTCGTGG AGGCAGCTCTCCTTCCTGCACGTGTACCACCACTGCACCATCTTCCTGGT GAGTGGACAGAGCTACTGGACTGCTGTACTCGCATGGTTTGAGGAATTGC GTTTTACTCTGTGGCCCGAGTTTGTGTGAAGAGGCATTCTCGGCGTATTG AGGACTGATGGAGTCGAACACTCCTGTACTCATGCCAAAGCAGGAATAAG GCATGGCAAACCAGGGTATAACTGGTCGATTCGCCGCGAGAGCGTGCACC CGTTGGAAATGTGGCCAAAGGGGAGGTACTCGGTAGGATGCTTTTTTGTG GACAGAACAGCAGCGTAAGAAAATTATGTGTAAAATATCCTCTTTTGTCG TTGCCCTGTTGGTGATCCGCCGTAGCTCCGTTCGCGCTCTCCCGTTTCCT TGCGCACTCTCCCCCCTCTACTTTGGAACCAGTTCTACTGGCTAAACGTC AATGCCGGGTACGACGGCGACGTGTACCTCACCATCGTCCTCAATGGCTT CATCCACACCGTCATGTACACCTACTACTTCGTTAGCATGCACACGAAGG ATATCTGGTGGAAGAAGTACCTGACGCTCATGCAGGTACGCCTTGATCCT TTGGTGTTGGTTGTTCACATAGATTTATGGGGACGCCACGAACTCGCTTC AACAAGAAGCATGAGTTCATCAGCGCCAGGTACCAGCAGAATGTTTTCGG GAACCTTTCTTGGGGTATGATAGCATACAAGTTGGACACACCGTAAGATA TTGTAGCGATCTATTTTGTCTTTGGTTGTGCGTGCGGAGGGAGAGCGACT GAGGCGTTGCCTGCAAGCATCATATAGACGAACGGGACGGAGGCCGATTT CCGCTTTGATCGTCGAGGTTTCCCTTCGCCCGAACGCAGCCGTAGCTCCG GTCGGCGGACTAGAGTGCTGGATGGTGCCCCGATAGATCGTGCTAACACA TTCCTTGCCTTGATGTTTTCGGCTCGCAGATGATCCAGTTCGTGTGCATG ACAACCCAGGCCCTGTACCTCTTGACCACCGGGTGAGTTGGCGTCTACCC TGGTGTTTTCGAGAAAACAAGTAATTTTTGCAGACCTCTGACCTCTGCAT TGCATCAAAGGGAACGCCTCTCCATCACCCGGTTGTGACTACAGTAGCGC GACAAGTGCTCATGTTTCGTTTTCTTTTTCGGGGGCGTGTTTGATTCCAA ATGGGAGCTTTGCACAAATTTTCTGTATGCAACATGAATAGATGTGGATT CACCTCTCGCTGGCTTGTTCCTGAGACCAAAGTCCACCATACCCCTGCCT GCGTTGATCGACGTTCCTGTCGTGGGGCGCTCAACAGGTGCACGAGCTAC CCTCCCCGCATCGTTGTCGTGTACGCCGGGTACATCCTTTCCCTGCTCTT CCTGTTCGCCCAGTTCTACGTCAACAGCTACACGAAGAAGCCCACCGCGA AGAACGCATAGTACAGCATCGTCGAGCTTCGCAAAACCCAGCGCATGAGG GCGGACGAACCTCCGGCGGCTGTTCGTTAGTGGTGTGTGTTTTTGACGTT TTTCGAAACGTTTGTGTGGGCGATGGCCCCCTCATTTCTTCCAGCGAGAC CTGGTGTCGTCCGCAAACAAGCCGGAGGAAATACGAACGAGTTCGCGCCT GCGATCATTCTGCGACACGGGCGCCCGGCAGCCAAGCCCAGCTCTTGAGG CTTGCACAACCGTGGCGTTCATGAGGAAGAAGGCTACGGTGGGCCGGGGC GGGGGCGTCGGGTTGAGAGTGAAAGCCATAGAGCGGGGTGTGGCGCCGAG GCTGGCCCTTCGTGGTTCGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1510:908..4078-

>mRNA_Ecto-sp13_S_contig1510.3853.1 ID=mRNA_Ecto-sp13_S_contig1510.3853.1|Name=mRNA_Ecto-sp13_S_contig1510.3853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=648bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1510:908..4078- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGACGGTCGGTCCCAAGGTCATGGCCGACATGAGCCCTATCGACAG
CTACCCTGTCCGGTTCGTCTACAACGTCGTGCAGATTATCCTGTGCTCGT
ACATGTGCGTCGAGGCCTTCATGATCGCGTACCGCAACGGATACCCCGTC
CTCCCTTGCGCCCCCTTCGACGCCGAGAACCCCCCCGCGGCTAACTTGCT
TTGGCTGTTTTACGTCTCCAAGGTCCTTGACTTCATGGATACCATTTTCA
TCGTCATGAAGAAGTCGTGGAGGCAGCTCTCCTTCCTGCACGTGTACCAC
CACTGCACCATCTTCCTGTTCTACTGGCTAAACGTCAATGCCGGGTACGA
CGGCGACGTGTACCTCACCATCGTCCTCAATGGCTTCATCCACACCGTCA
TGTACACCTACTACTTCGTTAGCATGCACACGAAGGATATCTGGTGGAAG
AAGTACCTGACGCTCATGCAGATGATCCAGTTCGTGTGCATGACAACCCA
GGCCCTGTACCTCTTGACCACCGGGTGCACGAGCTACCCTCCCCGCATCG
TTGTCGTGTACGCCGGGTACATCCTTTCCCTGCTCTTCCTGTTCGCCCAG
TTCTACGTCAACAGCTACACGAAGAAGCCCACCGCGAAGAACGCATAG
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