mRNA_Ecto-sp13_S_contig1510.3853.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1510.3853.1 vs. uniprot
Match: D7FYS6_ECTSI (Elongation of fatty acids protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYS6_ECTSI) HSP 1 Score: 444 bits (1142), Expect = 6.750e-156 Identity = 214/215 (99.53%), Postives = 215/215 (100.00%), Query Frame = 1
Query: 1 MVTVGPKVMADMSPIDSYPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPVLPCAPFDAENPPAANLLWLFYVSKVLDFMDTIFIVMKKSWRQLSFLHVYHHCTIFLFYWLNVNAGYDGDVYLTIVLNGFIHTVMYTYYFVSMHTKDIWWKKYLTLMQMIQFVCMTTQALYLLTTGCTSYPPRIVVVYAGYILSLLFLFAQFYVNSYTKKPTAKNA 645
MVTVGPKVMADMSPIDSYPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPVLPCAPFDAENPPAANLLWLFYVSKVLDFMDTIFIV+KKSWRQLSFLHVYHHCTIFLFYWLNVNAGYDGDVYLTIVLNGFIHTVMYTYYFVSMHTKDIWWKKYLTLMQMIQFVCMTTQALYLLTTGCTSYPPRIVVVYAGYILSLLFLFAQFYVNSYTKKPTAKNA
Sbjct: 1 MVTVGPKVMADMSPIDSYPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPVLPCAPFDAENPPAANLLWLFYVSKVLDFMDTIFIVLKKSWRQLSFLHVYHHCTIFLFYWLNVNAGYDGDVYLTIVLNGFIHTVMYTYYFVSMHTKDIWWKKYLTLMQMIQFVCMTTQALYLLTTGCTSYPPRIVVVYAGYILSLLFLFAQFYVNSYTKKPTAKNA 215
BLAST of mRNA_Ecto-sp13_S_contig1510.3853.1 vs. uniprot
Match: A0A835Z8H5_9STRA (Elongation of fatty acids protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8H5_9STRA) HSP 1 Score: 315 bits (808), Expect = 2.970e-104 Identity = 144/214 (67.29%), Postives = 172/214 (80.37%), Query Frame = 1
Query: 4 VTVGPKVMADMSPIDS--YPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPVLPCAPFDAENPPAANLLWLFYVSKVLDFMDTIFIVMKKSWRQLSFLHVYHHCTIFLFYWLNVNAGYDGDVYLTIVLNGFIHTVMYTYYFVSMHTKDIWWKKYLTLMQMIQFVCMTTQALYLLTTGCTSYPPRIVVVYAGYILSLLFLFAQFYVNSYTKKPTAK 639
+ VG VM + P+D+ YP RF+YN+VQI+LCSYMC+EA +IA+RN Y +LPC PF+ +NPP N+LWLFY+SK+LDF DT+FIV++K W+QLSFLHVYHH TIFLFYWLN+N GYDGD+YLTIVLNGFIHTVMYTYYFVSMHT IWWK LT MQM+QFV M +QALYLLTTGCT+YPPR+ Y YI SLL LF F++ SY K K
Sbjct: 52 IFVGSFVMKFVQPLDAPTYPFRFIYNIVQIMLCSYMCLEAGIIAHRNNYGILPCVPFNVQNPPVGNVLWLFYISKILDFADTVFIVLRKKWKQLSFLHVYHHTTIFLFYWLNINVGYDGDIYLTIVLNGFIHTVMYTYYFVSMHTDKIWWKSSLTAMQMVQFVTMISQALYLLTTGCTTYPPRVTQAYCLYIFSLLILFGNFFIKSYMPKQGGK 265
BLAST of mRNA_Ecto-sp13_S_contig1510.3853.1 vs. uniprot
Match: A0A6U1Q8V8_9STRA (Elongation of fatty acids protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1Q8V8_9STRA) HSP 1 Score: 302 bits (774), Expect = 6.110e-99 Identity = 140/195 (71.79%), Postives = 164/195 (84.10%), Query Frame = 1
Query: 43 IDSYPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPVLPCAPFDAENPPAANLLWLFYVSKVLDFMDTIFIVMKKSWRQLSFLHVYHHCTIFLFYWLNVNAGYDGDVYLTIVLNGFIHTVMYTYYFVSMHTKDIWWKKYLTLMQMIQFVCMTTQALYLLTTGCTSYPPRIVVVYAGYILSLLFLFAQFYVNSYTKK 627
I YPV+F+YN+VQ++LCSYM +EA M+A+R GY LPC PF+A+NPP A +L++FY+SK+LDFMDT FI++ K W+QLSFLHVYHH +IFLFYWLN+N GYDGDVYLTIVLNGFIHTVMYTYYFVS+HTKDIWWK LT+ QMIQFV M QA YLL TGC SYPPRIV+ Y YILSLL LFA F+V SY KK
Sbjct: 76 IKLYPVQFLYNIVQVMLCSYMAIEAGMVAFRQGYTCLPCEPFNAKNPPVAEVLYIFYLSKILDFMDTFFIIIGKKWKQLSFLHVYHHTSIFLFYWLNINVGYDGDVYLTIVLNGFIHTVMYTYYFVSLHTKDIWWKSSLTMCQMIQFVTMNAQAGYLLLTGCKSYPPRIVLSYLVYILSLLVLFANFFVQSYLKK 270
BLAST of mRNA_Ecto-sp13_S_contig1510.3853.1 vs. uniprot
Match: A0A7S4JGP6_9STRA (Elongation of fatty acids protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JGP6_9STRA) HSP 1 Score: 299 bits (765), Expect = 1.010e-97 Identity = 147/223 (65.92%), Postives = 169/223 (75.78%), Query Frame = 1
Query: 4 VTVGPKVM-ADMSPIDSYPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPVLPCAPFDAENPPAANLLWLFYVSKVLDFMDTIFIVMKKSWRQLSFLHVYHHCTIFLFYWLNVNAGYDGDVYLTIVLNGFIHTVMYTYYFVSMHTKD--------IWWKKYLTLMQMIQFVCMTTQALYLLTTGCTSYPPRIVVVYAGYILSLLFLFAQFYVNSYTKKPTAKNA 645
V +G VM + ++ +D YP++F YNV QI+LC+YM +E F++AYRNGY LPC D +NPP ANLLWLFYVSKV DF DTIFIV+ K WRQLSFLHVYHH TIFLFYWLN + +DGD+YLTIVLNGFIHTVMYTYYF+ MHTKD IWWK LTLMQ+IQF+ M +QA YLL TGC R+V VY YILSL FLFAQFYV SYTKKP K A
Sbjct: 51 VVIGSAVMKSGVAAMDPYPIKFFYNVSQIMLCAYMTIEGFLLAYRNGYTCLPCIDIDTKNPPLANLLWLFYVSKVWDFWDTIFIVLGKKWRQLSFLHVYHHTTIFLFYWLNAHVNFDGDIYLTIVLNGFIHTVMYTYYFICMHTKDPKTGKSLPIWWKSSLTLMQLIQFITMMSQATYLLVTGCQKTGLRVVSVYFVYILSLFFLFAQFYVASYTKKPKKKAA 273
BLAST of mRNA_Ecto-sp13_S_contig1510.3853.1 vs. uniprot
Match: A0A7R9WGN6_9STRA (Elongation of fatty acids protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WGN6_9STRA) HSP 1 Score: 297 bits (761), Expect = 3.930e-97 Identity = 145/216 (67.13%), Postives = 167/216 (77.31%), Query Frame = 1
Query: 4 VTVGPKVM-ADMSPIDSYPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPVLPCAPFDAENPPAANLLWLFYVSKVLDFMDTIFIVMKKSWRQLSFLHVYHHCTIFLFYWLNVNAGYDGDVYLTIVLNGFIHTVMYTYYFVSMHTKD--------IWWKKYLTLMQMIQFVCMTTQALYLLTTGCTSYPPRIVVVYAGYILSLLFLFAQFYVNSYTK 624
V +G VM + ++ +D YP++F+YNV QI+LC+YM +EAF++AYRNGY LPC D ENPP ANLLWLFY+SKV DF DT+FIV+ K WRQLSFLHVYHH TIFLFYWLN + YDGD+YLTI+LNGFIHTVMYTYYF+ MHTKD IWWK YLTLMQMIQFV M +QA YLL T C R+V VY YILSL FLFAQFYV SYTK
Sbjct: 51 VVIGSAVMKSGVAAMDPYPIKFIYNVSQIMLCAYMTIEAFLLAYRNGYTCLPCNNVDTENPPLANLLWLFYISKVWDFWDTVFIVIGKKWRQLSFLHVYHHTTIFLFYWLNSHVNYDGDIYLTILLNGFIHTVMYTYYFICMHTKDPKTGKSLPIWWKSYLTLMQMIQFVTMMSQATYLLGTQCEKTSLRVVFVYLVYILSLFFLFAQFYVQSYTK 266
BLAST of mRNA_Ecto-sp13_S_contig1510.3853.1 vs. uniprot
Match: A0A1S7C7Q3_9STRA (Elongation of fatty acids protein n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A1S7C7Q3_9STRA) HSP 1 Score: 297 bits (760), Expect = 6.380e-97 Identity = 139/221 (62.90%), Postives = 167/221 (75.57%), Query Frame = 1
Query: 1 MVTVGPKVMADMSPIDSYPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPVLPCAPFDAENPPAANLLWLFYVSKVLDFMDTIFIVMKKSWRQLSFLHVYHHCTIFLFYWLNVNAGYDGDVYLTIVLNGFIHTVMYTYYFVSMHTKDIWWKKYLTLMQMIQFVCMTTQALYLLTTGCTSYPPRIVVVYAGYILSLLFLFAQFYVNSYT------KKPTAKNA 645
+V VG +M + P+ Y ++F YN+ Q+ LCSYMC+EA + AYRN Y LPC PF+A NPP A LLWLFYVSKV DF DT+FI++ K W QLSFLHVYHH TIFL YWLN+NAGYDGD++LT++LNG IHTVMYTYYF+SMHTKDIWWKKYLTL Q+IQF+ M QA+YLL GC + P+I +Y GYILSLL LF FY SY+ KKP +K A
Sbjct: 56 IVFVGSAMMKNAQPVKLYGLQFFYNISQVALCSYMCIEAAIQAYRNNYTFLPCEPFNATNPPIAPLLWLFYVSKVFDFADTVFIILGKKWNQLSFLHVYHHVTIFLVYWLNLNAGYDGDIFLTVILNGAIHTVMYTYYFLSMHTKDIWWKKYLTLFQIIQFLTMNAQAIYLLCVGCKGFSPQITKLYLGYILSLLVLFLNFYFKSYSGVKPNGKKPVSKKA 276
BLAST of mRNA_Ecto-sp13_S_contig1510.3853.1 vs. uniprot
Match: L1IAX0_GUITC (Elongation of fatty acids protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IAX0_GUITC) HSP 1 Score: 292 bits (748), Expect = 4.180e-95 Identity = 136/217 (62.67%), Postives = 170/217 (78.34%), Query Frame = 1
Query: 1 MVTVGPKVMADMSPID--SYPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPVLPCAPFDAENPPAANLLWLFYVSKVLDFMDTIFIVMKKSWRQLSFLHVYHHCTIFLFYWLNVNAGYDGDVYLTIVLNGFIHTVMYTYYFVSMHTKDIWWKKYLTLMQMIQFVCMTTQALYLLTTGCTSYPPRIVVVYAGYILSLLFLFAQFYVNSYTKKPTAKNA 645
+V VG VM +D +YP+RFVYN++Q++LCSYM +EA ++AYR+ Y ++PC PF ENPP A +LWLFY+SKVLDFMDT FIV+ K W QLSFLHVYHH TIF+ YW+NVN GYDGD+YLTIVLNGFIHTVMYTYYFVSMHTKDIWWKKYLT+MQMIQF+ M QA++LL + C ++P ++ +Y YI+SL LF F++ SY P +K A
Sbjct: 58 LVIVGRIVMIPFRSLDKLTYPIRFVYNILQVMLCSYMTLEAGILAYRHNYNLVPCNPFKTENPPIAPVLWLFYISKVLDFMDTFFIVLGKKWEQLSFLHVYHHLTIFMIYWMNVNVGYDGDIYLTIVLNGFIHTVMYTYYFVSMHTKDIWWKKYLTMMQMIQFITMNGQAIWLLQSNCQTFPRKVTQLYLVYIMSLFALFLNFFIRSYVS-PKSKKA 273
BLAST of mRNA_Ecto-sp13_S_contig1510.3853.1 vs. uniprot
Match: W7TSM8_9STRA (Elongation of fatty acids protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSM8_9STRA) HSP 1 Score: 293 bits (750), Expect = 7.550e-95 Identity = 138/230 (60.00%), Postives = 167/230 (72.61%), Query Frame = 1
Query: 4 VTVGPKVMADMSPIDSYPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPVLPCAPFDAENPPAANLLWLFYVSKVLDFMDTIFIVMKKSWRQLSFLHVYHHCTIFLFYWLNVNAGYDGDVYLTIVLNGFIHTVMYTYYFVSMHTKDIWWKKYLTLMQMIQFVCMTTQALYLLTTGCTSYPPRIVVVYAGYILSLLFLFAQFYVNSYT------KKPTAKNA*YSIVELRKT 675
V VG VM D P+ Y ++F YN+ Q+ LCSYMC+EA + AYRN Y +LPC PF+ NPP LLWLFY+SK+ DF DT+FI++ K W QLSFLHVYHH TIFL YWLN+NAGYDGD++LT++LNG IHTVMY YYF+SMHTKDIWWKKYLTL Q+IQF+ M QA+Y+L GC S+P +I +Y GYILSLL LF FY +Y+ KKP N I LR T
Sbjct: 69 VFVGSIVMKDAQPVKLYGLQFFYNISQVALCSYMCIEAVIQAYRNNYTLLPCEPFNTTNPPLGPLLWLFYISKIFDFADTVFIILGKKWSQLSFLHVYHHVTIFLVYWLNLNAGYDGDIFLTVILNGAIHTVMYAYYFLSMHTKDIWWKKYLTLFQIIQFLTMNAQAIYILGVGCKSFPTQITKLYLGYILSLLVLFLNFYFKTYSSPKPNGKKPKKANYLIEIDILRST 298
BLAST of mRNA_Ecto-sp13_S_contig1510.3853.1 vs. uniprot
Match: A0A0G4I034_9ALVE (Elongation of fatty acids protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I034_9ALVE) HSP 1 Score: 290 bits (742), Expect = 6.790e-94 Identity = 127/193 (65.80%), Postives = 156/193 (80.83%), Query Frame = 1
Query: 49 SYPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPVLPCAPFDAENPPAANLLWLFYVSKVLDFMDTIFIVMKKSWRQLSFLHVYHHCTIFLFYWLNVNAGYDGDVYLTIVLNGFIHTVMYTYYFVSMHTKDIWWKKYLTLMQMIQFVCMTTQALYLLTTGCTSYPPRIVVVYAGYILSLLFLFAQFYVNSYTKK 627
+YP RFVYNV Q++LCSYM +EA ++AYRN Y ++PC F+ +NPP ANLLW+FY+SK+ DF DTIFI++ K W+QLSFLHVYHH TIF YW+N+ GYDGDVYLTIVLNGFIH VMYTYYF+SMHTKDIWWK LT MQM+QF+CM QA ++L GC YPPR+ +Y YI+SL LFAQF+V +Y+KK
Sbjct: 92 TYPFRFVYNVAQVMLCSYMTIEAVLLAYRNDYGLVPCVKFNPQNPPVANLLWMFYISKIFDFADTIFIILGKKWQQLSFLHVYHHATIFSIYWVNLRLGYDGDVYLTIVLNGFIHAVMYTYYFLSMHTKDIWWKSKLTSMQMLQFICMNVQASWMLLNGCQQYPPRLTAIYLVYIMSLFLLFAQFFVRTYSKK 284
BLAST of mRNA_Ecto-sp13_S_contig1510.3853.1 vs. uniprot
Match: A0A6T8G4U0_HEMAN (Elongation of fatty acids protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8G4U0_HEMAN) HSP 1 Score: 286 bits (732), Expect = 9.050e-93 Identity = 128/208 (61.54%), Postives = 163/208 (78.37%), Query Frame = 1
Query: 4 VTVGPKVMADMSPID--SYPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPVLPCAPFDAENPPAANLLWLFYVSKVLDFMDTIFIVMKKSWRQLSFLHVYHHCTIFLFYWLNVNAGYDGDVYLTIVLNGFIHTVMYTYYFVSMHTKDIWWKKYLTLMQMIQFVCMTTQALYLLTTGCTSYPPRIVVVYAGYILSLLFLFAQFYVNSYT 621
V G VM P+D +YP+RF YN+VQ++LCSYM +EA +AYRNGY + PC PFD ++PP LLWLFYVSK+LDF+DT I++ K W QLSFLHVYHH TIF+ YW+NVN GYDGD+YLTIVLNG IHT+MYTYYFVSMH++DIWWKKYLT+ QMIQF+CM +QA+ L+ C ++P R+ + Y YI++L FLF +F++ SYT
Sbjct: 53 VLAGRIVMTVFHPMDRLTYPIRFCYNIVQMMLCSYMTIEAAALAYRNGYNMYPCNPFDTKSPPLGPLLWLFYVSKILDFVDTAVIILGKKWGQLSFLHVYHHATIFIMYWVNVNVGYDGDIYLTIVLNGVIHTIMYTYYFVSMHSRDIWWKKYLTMCQMIQFICMNSQAILLIKDHCKTFPARVTMTYLFYIITLFFLFLKFFITSYT 260 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1510.3853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1510.3853.1 >prot_Ecto-sp13_S_contig1510.3853.1 ID=prot_Ecto-sp13_S_contig1510.3853.1|Name=mRNA_Ecto-sp13_S_contig1510.3853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=216bp MVTVGPKVMADMSPIDSYPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPVback to top mRNA from alignment at Ecto-sp13_S_contig1510:908..4078- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1510.3853.1 ID=mRNA_Ecto-sp13_S_contig1510.3853.1|Name=mRNA_Ecto-sp13_S_contig1510.3853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1510:908..4078- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1510:908..4078- >mRNA_Ecto-sp13_S_contig1510.3853.1 ID=mRNA_Ecto-sp13_S_contig1510.3853.1|Name=mRNA_Ecto-sp13_S_contig1510.3853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=648bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1510:908..4078- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |