mRNA_Ecto-sp13_S_contig15097.3849.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15097.3849.1
Unique NamemRNA_Ecto-sp13_S_contig15097.3849.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15097.3849.1 vs. uniprot
Match: D7FRZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ1_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 4.970e-37
Identity = 78/102 (76.47%), Postives = 86/102 (84.31%), Query Frame = 1 
Query:   16 FGALVSKMCDTLDVRASDGGPGPAFHPGERTAMVLCRLGHGAGERAMAALFGVSDGCVSSCTSDFLTRVAERFVPRFLSS-PTRNDQDDISAAFERRTGYSG 318
            F ALV ++ DTLDVRASDGG GPAFHP ERTAMVL RLGHGAG RA AALFGVSDG V+SCT +F+TRV  R +PRFL S PTRNDQD+ISAAFERRTG+ G
Sbjct:   49 FAALVKELYDTLDVRASDGGRGPAFHPCERTAMVLYRLGHGAGARATAALFGVSDGWVTSCTCEFITRVTARLIPRFLWSWPTRNDQDNISAAFERRTGFRG 150
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15097.3849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRZ1_ECTSI4.970e-3776.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15097contigEcto-sp13_S_contig15097:1448..3954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1861
Hectar predicted targeting categoryother localisation
Exons3
Cds size297
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462803.5287447-UTR-Ecto-sp13_S_contig15097:1447..23991681462803.5287447-UTR-Ecto-sp13_S_contig15097:1447..2399Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15097 1448..2399 -
1681462803.5461388-UTR-Ecto-sp13_S_contig15097:2481..30571681462803.5461388-UTR-Ecto-sp13_S_contig15097:2481..3057Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15097 2482..3057 -
1681462803.5761566-UTR-Ecto-sp13_S_contig15097:3918..39541681462803.5761566-UTR-Ecto-sp13_S_contig15097:3918..3954Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15097 3919..3954 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462803.5562117-CDS-Ecto-sp13_S_contig15097:3057..30761681462803.5562117-CDS-Ecto-sp13_S_contig15097:3057..3076Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15097 3058..3076 -
1681462803.5662122-CDS-Ecto-sp13_S_contig15097:3640..39181681462803.5662122-CDS-Ecto-sp13_S_contig15097:3640..3918Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15097 3641..3918 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15097.3849.1prot_Ecto-sp13_S_contig15097.3849.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15097 3058..3918 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15097.3849.1

>prot_Ecto-sp13_S_contig15097.3849.1 ID=prot_Ecto-sp13_S_contig15097.3849.1|Name=mRNA_Ecto-sp13_S_contig15097.3849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=99bp
MCDTLDVRASDGGPGPAFHPGERTAMVLCRLGHGAGERAMAALFGVSDGC
VSSCTSDFLTRVAERFVPRFLSSPTRNDQDDISAAFERRTGYSGYLRS*
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mRNA from alignment at Ecto-sp13_S_contig15097:1448..3954-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15097.3849.1 ID=mRNA_Ecto-sp13_S_contig15097.3849.1|Name=mRNA_Ecto-sp13_S_contig15097.3849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2507bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15097:1448..3954- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCAGGAGTCGGCCTTTGGTGCCCTTGTGTCGAAGATGTGCGACACACT
CGATGTTCGAGCATCCGACGGCGGGCCCGGCCCGGCTTTCCATCCGGGCG
AACGAACGGCTATGGTCTTGTGCAGGTTAGGACACGGGGCCGGAGAACGG
GCGATGGCGGCGCTCTTCGGTGTTTCTGATGGGTGCGTCTCATCATGCAC
GAGCGATTTCCTCACGAGGGTGGCTGAGAGGTTCGTCCCGAGGTTCCTGT
CCTCTCCGACACGAAACGACCAAGACGATATATCTGCGGCTTTCGAGCGC
CGGACGGGATATAGGTAGGTTCCCGTTGCTACCGCACCGCGAAGAAAACA
ACGCGTTTCTCGCGCAAAAACGCTGAGATAGCCCCGGGCGCACGTATATT
TTTTGGAGTTGGTGGCGCATGTATCTTTTTGTTGTTGTAGGTGCTTCTTT
TGCCCCTCTCCCTTGGAGTGCGCTCAGGGGCGTTCTTTTATCTGCTGATC
CCGTGGACACCCCATGGTGCGCTCGAACGCATCCACGGTATTTTTCATTC
TGATGACATCGCCGTTGCGTTGAAGTTCCATGCCGTTGGCGAGGCTTTGC
CTGCTCTTGGTTCTGTCTAGTGCGCAGCAACCGCCGAGGCCCGCCCTTCT
CGACAGCTGGGTGTGGGAATGTGCGAAAACAGAGACTTCGCCCAAGGGGA
AACTTAAACTTGGCACCGTTGAGTTCGCTCCGGGACGTTTGTTTTCAACA
AAACCTAGTATGTTCCCCCTGGGATGAACTAGAAAATGTTGACGGTGCCC
CCATCCCAAGTACTCTCTGCCATCCTTGAACTTGCTCTCATGTCTCTTGG
TGTCCTTCGCTGTCTCTACGAACGCCAGTGGATATTTAAGGTCTTGAAGA
ACCGCATGTACTTCAACATCGACAAGGTTCCGCGGGCCATCCTGGCGTGC
GTTCTTTTCTACAAGTTGATCGTGTTCCGCGTGGGACAGGAGAGACACGA
GGTCTTCGTCGACGACTAGCCTAGCAAGCACGCGCGTGGCCCGCTGTCGA
ACGTAGCGGCTGAGCAGGCAGCGACGGCGGCTTGGGACCACAAGGCGAAT
TACCTCGCAGACACGTACCTCCTGGCGATATGAGGGGTGGAAAGATCCGC
GCTTGACCAAGCTCGCCTGGCGGCGGAGGCTACCTACGGTGCGCAGCCGG
CAAAAGAGGAGGTGGGAGGCAGCGAAGAAGCGGACGGGCCCGACGAAGAC
CCCGCCATTCTGCCGGTATGAATTAGCTATGGGAAGGCGGGGATGTGTTC
GGAACTCCCGTGTAGTGGAGTACTGCCTCCTCTGGGTTGCGGTGGTCTTA
ATTGTCTGCAGTGAGACATGCAGGTACAGGAGCCCTAGTGTTTTCCTGCT
TCCTCTACCGTTGTGCTTTTCGTGCCTTCTCTGGCTCCTCTTGATTTGTT
TGGATGTTCGGCCGTTTGCCTCAGCTGCCTCTTTACCCTGTTGCCTCTGA
AGCCGGTACGCTATCCTTACACATTGCCCCCCCCCCGCACTGCACAAAAT
GGAAGTGCGGCGCAGGCTGGATGTGCCTGGTCGGTGAGAAGCCGACACGG
AACCCTTCCGCGTTGTAGGCTGGTGTGGGCGCCCTTTCGGTAGTCATAGT
CCTCTCTTTGTTGGCCTCGCATGGTCGTTTTCCTCTTTTTTTCCCCTATT
TTTTTGCGATTGTAAAATATTTTTTTCGTTTTGTTTCTTCCGCAGCTCGT
GCGTGCCGGGTTTTGTGACCACAGGCTCCATGGATGTTGATGATTATTCG
AAAGCTAACGTGATAAATAGAGAGGGCGGAGTGCCCGGAAAACGGGAACC
CGAAAGGATATGGTATGCTGATGCGTGTCGCTCGGGTGCCCCCGGGGGTT
CACCAACCCAGCGTTTGATCGCCTCTGTGTAGTGCTTCGGGGAAAACCAT
CCCCTTACTGTAGCGCCTTAACCCGAGGGGCGAGCCACCCTGTGCTGTTT
GCCGGGACGAGAAAAAGTTAGTAGGGAAGCACTACAATCCGTGTATTCTG
GGCCGCATGTTTTCGGTCGCGTATCTTTGCGGTGAGGCTTTTGAAGTAAT
TCTTGGAGTCTCGTCCACTTGTAGTCCTTGTCTTGTGTGGGGTGCTAGCA
GGTTTGTCAGCTTTTTATCTTTTCTGCAGGACATCGTGTCAGGACCGCAC
CAAAACACGGGGTGGTGGTGTTGCAGATGTTCCGCCTTACTAGTTTGTGC
TTCTTTAAAAAAATGTGTTTCTTGTTTTAGAGTTAGGTCCTGACAGGAGA
GGCACCCGGAATGATTTTGTCCCTTGGAGTGGGCAGTGGGCGGGGGAGGG
GAGTTGCACACGGAAGTGCGTGCAAAGAATGCACCTCGCTGGTGACGACA
GTAATGCACCTCGCTTGTTGGCAAGAAACCCTCAAGGTGGCATTGCAGAC
ATGACGTTTTGGTCTTTAACATAGATAATATAGTATACCGCCGTGACGGG
GAACCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15097:1448..3954-

>mRNA_Ecto-sp13_S_contig15097.3849.1 ID=mRNA_Ecto-sp13_S_contig15097.3849.1|Name=mRNA_Ecto-sp13_S_contig15097.3849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15097:1448..3954- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCGACACACTCGATGTTCGAGCATCCGACGGCGGGCCCGGCCCGGC
TTTCCATCCGGGCGAACGAACGGCTATGGTCTTGTGCAGGTTAGGACACG
GGGCCGGAGAACGGGCGATGGCGGCGCTCTTCGGTGTTTCTGATGGGTGC
GTCTCATCATGCACGAGCGATTTCCTCACGAGGGTGGCTGAGAGGTTCGT
CCCGAGGTTCCTGTCCTCTCCGACACGAAACGACCAAGACGATATATCTG
CGGCTTTCGAGCGCCGGACGGGATATAGTGGATATTTAAGGTCTTGA
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