mRNA_Ecto-sp13_S_contig1509.3847.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1509.3847.1 vs. uniprot
Match: D7FSH0_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSH0_ECTSI) HSP 1 Score: 348 bits (893), Expect = 5.880e-111 Identity = 198/295 (67.12%), Postives = 217/295 (73.56%), Query Frame = 2
Query: 2 QVHTVFKRYARGTDLRVGLAIGQTNFLEEQLSLVGAVALEGNPVATARASFLRSQGRHMGPDPTKGGLILEGDVWTGGGAPAGGSSEVDIVVATPGRLLDHIAQTPGFTLQHLRYLVIDEADRLLNQSYQGWVKKVIKAAYRREPGKAGPVYERTSANSNDTRPP-----GTEDRDERAPAA------------NGTSTSSDRRWQKXXXXXXXXXXXXXXGKRPRA-SPVLPSGFLLDPVTVRGRPLAAGDRVRGATVSTPPLRKLLFPATLTNNPQKLAGLDVVNPLIYTARE 832
QVH+VFK+YARGT LRVGLAIGQTNFLEEQL+LVG VAL GNP ATARASFLR+QGR + P+PT GG L+ W+G GAPAGGSSEVDIVVATPGRLLDH+ QTPGFTLQHLRYL+IDEADRLLNQSYQGWV KVIKAAYR+EPG A PVYER + N R G ED D R NG+++ S ++ GKRPR S PS F LDPVTVRGRPLA G+R+RGATVSTPPLRKLLF ATLTNNPQKLAGLDVVNPLIYTA E
Sbjct: 268 QVHSVFKKYARGTGLRVGLAIGQTNFLEEQLALVGPVALAGNPTATARASFLRAQGRAIRPNPTMGGSNLDSGGWSGTGAPAGGSSEVDIVVATPGRLLDHLTQTPGFTLQHLRYLIIDEADRLLNQSYQGWVGKVIKAAYRKEPGTAAPVYERFTFNGGGKRNDVSGGAGAEDDDSRGQQQPQDVEKAQECDNNGSNSVSSQQ----------QLGVTGVGKRPRPPSRRPPSAFSLDPVTVRGRPLATGERIRGATVSTPPLRKLLFSATLTNNPQKLAGLDVVNPLIYTATE 552
BLAST of mRNA_Ecto-sp13_S_contig1509.3847.1 vs. uniprot
Match: A0A835YS10_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS10_9STRA) HSP 1 Score: 199 bits (507), Expect = 2.090e-55 Identity = 145/283 (51.24%), Postives = 161/283 (56.89%), Query Frame = 2
Query: 2 QVHTVFKRYARGTDLRVGLAIGQTNFLEEQLSLVGAVALEGNPVATARASFLRSQGRHMGPDPTKGGLILEGDVWTGGGAPAGGSSEVDIVVATPGRLLDHIAQTPGFTLQHLRYLVIDEADRLLNQSYQGWVKKVIKAAYRREPGK------AGPVYERTSANSNDTRPPGTEDRDERAPAANGTSTSSDRRWQKXXXXXXXXXXXXXXGKRPRASPVLPSGFLLDPVTVRGRPLAAGDRVRGATVSTPPLRKLLFPATLTNNPQKLAGLDVVNPLIYTARE 832
QVH VF Y GT LRVGLAIGQ+N L+EQLSLVG AL +PVA ARA G P G G P GG SEVDI+VATPGRLLDH+ QTPGFTLQHL YLV+DEADRLLNQSYQ WV +V++AAYR G + P+ + A A XXXXXXXXXXXXXX + P TVRGRP AA RV G +T PLRKLLF ATLTNNPQKLA L + NP+ YTARE
Sbjct: 138 QVHGVFTTYCTGTGLRVGLAIGQSNLLDEQLSLVGTTALSNSPVAAARAWVGGKSGGLRAPPA---GAFARG---MSAAVPLGGVSEVDILVATPGRLLDHLEQTPGFTLQHLMYLVVDEADRLLNQSYQDWVGRVLEAAYRAREGSVTCGSSSSPISNPSVA----------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQPTTVRGRPGAAEGRVTGPIAATLPLRKLLFSATLTNNPQKLASLGLANPVFYTARE 398
BLAST of mRNA_Ecto-sp13_S_contig1509.3847.1 vs. uniprot
Match: A0A7S4QRG8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QRG8_9STRA) HSP 1 Score: 136 bits (342), Expect = 8.570e-33 Identity = 112/295 (37.97%), Postives = 142/295 (48.14%), Query Frame = 2
Query: 2 QVHTVFKRYARGTDLRVGLAIGQTNFLEEQLSLVGAVALEGNPVATARASFLRSQGR-HMGPDPTKGGLILE-----GDVWTGG---GAPAGGSSEVDIVVATPGRLLDHIAQTPGFTLQHLRYLVIDEADRLLNQSYQGWVKKVIKAAYRREPGKAGPVYERTSANS-NDTRPPGTEDRDERAPAANGTSTSSDRRWQKXXXXXXXXXXXXXXGKRPRASPVLPSGFLLDPVTVR--GRPLAAGDR--------VRGATVSTPPLRKLLFPATLTNNPQKLAGLDVVNPLIYTA 826
QV+ VF RY +G+DL VGLAIGQ +F EQ SLV L + +S+ + DP LE D+ P G S VD++VATPGRL+DHI +TPGFTLQHLR+LVIDEADRL+NQSYQ W+ +V++AA A ++ + ND G A T+SDR + +LDP+T R G + D V A T PLRKLLF ATLT +PQKLA L +VNP + A
Sbjct: 35 QVYNVFDRYTQGSDLCVGLAIGQKDFATEQKSLV----LGDDNAGLCSSSYDHDTAQIQYALDPINTHSALEIFDYDADINVTSKKCSLPRAGRSAVDVLVATPGRLMDHIEKTPGFTLQHLRFLVIDEADRLVNQSYQNWIGRVMRAA------SAASAFDSCGDSGVNDNNKDGHS-------AVTRLETASDR-----------------------------TSLILDPITWRKGGMDGTSFDTNATNTASFVPAAVCQTVPLRKLLFSATLTKDPQKLASLGLVNPKHFDA 283
BLAST of mRNA_Ecto-sp13_S_contig1509.3847.1 vs. uniprot
Match: A0A7S3V688_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V688_9STRA) HSP 1 Score: 126 bits (317), Expect = 3.670e-29 Identity = 105/297 (35.35%), Postives = 139/297 (46.80%), Query Frame = 2
Query: 2 QVHTVFKRYARGTDLRVGLAIGQTNFLEEQLSLVGAVALEG-NPVATARASF------LRSQGRHMGPD-PTKGGLILEGDVWTGGG---------APAGGSSEVDIVVATPGRLLDHIAQTPGFTLQHLRYLVIDEADRLLNQSYQGWVKKVIKAAYRREPGKAGPVYERTSANSNDTRPPGTEDRDERAPAANGTSTSSDRRWQKXXXXXXXXXXXXXXGKRPRASPVLPSGFLLDPVTVRGRPLAAGDRVRGATVSTP-----PLRKLLFPATLTNNPQKLAGLDVVNPLIYTA 826
QV VF+RY++G+DL +GLAIGQT+F EQ SL+ + G P R + +++ + D P + G W G P GG S VD++V TPGRL+DH+ +TPGFTLQHLR+L+ DEADRL+NQ YQ W+++V++AA AGP DR + N S + LDPVT R R + A D T T LRKLLF ATLT +P+KLA L +VNP + A
Sbjct: 268 QVFKVFQRYSKGSDLSIGLAIGQTDFEAEQSSLIFEKKMIGFQPREEYRCQYALKPFSVKNATKAYSFDAPGDKSDVSLGGCWAHGDLKDFPDLCDTPIGGKSAVDVLVCTPGRLIDHLDKTPGFTLQHLRFLIADEADRLVNQGYQDWIRRVVEAA------SAGP------------------DR-----SLNMDSCGLQK---------------------------------LDPVTWR-RGIDANDSNHANTQDTNVCRSVQLRKLLFSATLTKDPRKLASLGLVNPKYFDA 501
BLAST of mRNA_Ecto-sp13_S_contig1509.3847.1 vs. uniprot
Match: A0A7R9YBX1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBX1_9STRA) HSP 1 Score: 123 bits (309), Expect = 4.370e-28 Identity = 101/300 (33.67%), Postives = 132/300 (44.00%), Query Frame = 2
Query: 2 QVHTVFKRYARGTDLRVGLAIG---------------QTNFLEEQLSLVGAVALEGNPVATARASFLRSQGRHMGPDPTKGGLILEGDVWTGG--------GAPAGGSSEVDIVVATPGRLLDHIAQTPGFTLQHLRYLVIDEADRLLNQSYQGWVKKVIKAAYRREPGKAGPVYERTSANSNDTRPPGTEDRDERAPAANGTSTSSDRRWQKXXXXXXXXXXXXXXGKRPRASPVLPSGFLLDPVTVRGRPLAAGDRVRGATVS-TPPLRKLLFPATLTNNPQKLAGLDVVNPLIYTAR 829
QV+ V RY +G D+ +GLA G +F EQ L G VA + P T L G P L+ G TG GG S VD++VATPGRL+ H+ TPGFTLQHL +LV+DEADRLL+QSYQ WV++V+ A+ + P S S+D K PR L ++PV +RG AA G S PPLR++LF AT+T +PQKLA LD+ P+++T R
Sbjct: 192 QVYGVMLRYTQGLDIEIGLATGGGKVDPAAAAESRSGAGDFEMEQRRLTGCVASDAPP-PTGGFGILGPGEPEDGTKPNPSALLPGGFPGTGSLLRGPIRRTLGPGGRSRVDVLVATPGRLMSHLDYTPGFTLQHLEFLVVDEADRLLSQSYQNWVQRVLHASAMQAP----------------------------------ESFSAD--------------------KTPRR---LGDRVKIEPVRIRGAGTAAQGSSGGRPRSLAPPLRRMLFSATMTRDPQKLAHLDLFYPMMFTVR 433
BLAST of mRNA_Ecto-sp13_S_contig1509.3847.1 vs. uniprot
Match: A0A448ZLR2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZLR2_9STRA) HSP 1 Score: 119 bits (299), Expect = 9.480e-27 Identity = 97/292 (33.22%), Postives = 134/292 (45.89%), Query Frame = 2
Query: 2 QVHTVFKRYARGT--DLRVGLAIGQTNFLEEQLSLVGAVALE---GNPVATARASFLRSQGRHMGPDPTKGGLILEGDV------WTGGGA----PAGGSSEVDIVVATPGRLLDHIAQTPGFTLQHLRYLVIDEADRLLNQSYQGWVKKVIKAAYRREPGKAGPVYERTSANSNDTRPPGTEDRDERAPAANGTSTSSDRRWQKXXXXXXXXXXXXXXGKRPRASPVLPSGFLLDPVTVRGRPLAAGDRVRGATVSTPPLRKLLFPATLTNNPQKLAGLDVVNPLIYTARE 832
QV+ VF Y++G+ DLR+GLAIGQT+F EQ L+ + E GN + S L + D + L + D+ W A PAGG S VD++V TPGRL+DH+ TPGFTLQHLR+LVIDEADRLL+QSY GW+++V+ + P E + + P T R E + G D + ++ V LRKLL+ ATLT +PQKL+ L ++NP + A +
Sbjct: 280 QVYEVFDAYSKGSKNDLRIGLAIGQTDFKAEQKKLIFGDSDENEDGNNWTRLQNS-LDPGNLELALDAMREQLENDNDIGDETKDWKSNNAKSKIPAGGISAVDVLVCTPGRLVDHLDNTPGFTLQHLRWLVIDEADRLLSQSYHGWIQRVLDCVHA-PPAPTSRTAEYKTDEGTISIDPVTHRRSENSSFVTGIGPEKDNQ------------------------------------------SSSDVGVHSNICQRIQLRKLLYSATLTKDPQKLSALRLINPKYFNAHD 527
BLAST of mRNA_Ecto-sp13_S_contig1509.3847.1 vs. uniprot
Match: A0A2D4BV54_PYTIN (DEAD/DEAH box RNA helicase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BV54_PYTIN) HSP 1 Score: 117 bits (293), Expect = 4.580e-26 Identity = 63/141 (44.68%), Postives = 85/141 (60.28%), Query Frame = 2
Query: 2 QVHTVFKRYARGTDLRVGLAIGQTNFLEEQLSLVGAVALEGNPVATARASFLRSQGRHMGPDPTKGGLILEGDVWTGGGAPAGGSSEVDIVVATPGRLLDHIAQTPGFTLQHLRYLVIDEADRLLNQSYQGWVKKVIKAAY 424
QVH + ++ T LR GLAIGQ+NF EQ +LVG+ + + + R+ + M D GG S+VDI+VATPGRL+DH+ QTPGFTLQHL++LV+DEADRLLNQSYQ W+ K+ + +
Sbjct: 117 QVHQIVSQFCESTPLRCGLAIGQSNFAAEQQTLVGSDGRQPH-----QHGISRTTSKSMAVD--------------------GGDSKVDILVATPGRLVDHLEQTPGFTLQHLQFLVVDEADRLLNQSYQDWIAKIYASIF 232
BLAST of mRNA_Ecto-sp13_S_contig1509.3847.1 vs. uniprot
Match: A0A7S2M677_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M677_9STRA) HSP 1 Score: 113 bits (282), Expect = 8.010e-26 Identity = 106/312 (33.97%), Postives = 148/312 (47.44%), Query Frame = 2
Query: 2 QVHTVFKRYARGTDLRVGLAIGQTN----FLEEQLSLVGAVALEG-NPVATARASFLR-----------SQGRHMGPDPTKGGLILE---GDVWTGGGAP----AGGSSEVDIVVATPGRLLDHIAQTPGFTLQHLRYLVIDEADRLLNQSYQGWVKKVIKAAYRREPGKAGPVYERTSANSNDTRPPGTEDRDERAPAANGTSTSSDRRWQKXXXXXXXXXXXXXXGKRPRASPVLPSGFLLDPVTVR----GRPLAAGDR----------VRGATVSTPPLRKLLFPATLTNNPQKLAGLDVVNPLIYTA 826
QV+ VF RYA+G+D+++GLA+G N E+ SLV E + + T + LR ++ RH +PT G L+ G + + G GG S VDI+V TPGRL+DH+ +TPGFTLQHL+YLV+DEADRL+NQ YQ WV +VI+A+ + V+ + A+ TS S+ K P + F++DP+T R G + GD V + LRK+LF ATLT +PQKLA L +VNP + A
Sbjct: 21 QVYDVFVRYAKGSDIKIGLAVGGGNKKGDLANERRSLVVETYNEAIHEIRTDDGALLRRKVGGLYESASARLRHSF-EPTSLGKALDAYDGTLKSDSGPQIFPKVGGRSAVDILVCTPGRLMDHL-ETPGFTLQHLKYLVVDEADRLVNQPYQNWVGRVIEAS------NSSNVFNSSVADH--------------------TSLSA-------------------YVKSPLQVAPDENTFIIDPITHRSAGSGLGMLHGDNSTPNEDDAGLVGDFLGQSVHLRKMLFSATLTQDPQKLARLGLVNPKHFDA 285
BLAST of mRNA_Ecto-sp13_S_contig1509.3847.1 vs. uniprot
Match: B8BZV2_THAPS (Atp-dependent RNA helicase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZV2_THAPS) HSP 1 Score: 114 bits (285), Expect = 3.020e-25 Identity = 95/281 (33.81%), Postives = 127/281 (45.20%), Query Frame = 2
Query: 2 QVHTVFKRYARGTDLRVGLAIG----QTNFLEEQLSLVGAVALEGNPVATARASFLRSQGRHMGPDPTKGGLILEGDVWTGGGAPAGGSSEVDIVVATPGRLLDHIAQTPGFTLQHLRYLVIDEADRLLNQSYQGWVKKVIKAAYRREPGKAGPVYERTSANSNDTRPPGTEDRDERAPAANGTSTSSDRRWQKXXXXXXXXXXXXXXGKRPRASPVLPSGFLLDPVTVRGRPLAAGDRVRGATVSTPPLRKLLFPATLTNNPQKLAGLDVVNPLIYTARE 832
QVH VF RYA+G+ L++GLA+G +++ + E+ SLV A +G T R R G + P+ GG S VDI+VATPGRL+DH+ TPGFTLQHLR+LVIDEADRL+NQ YQ WV +V++A S SS+R G++ +A+ G+ V G PLRK+LF ATLT +PQKLA L + NP + A +
Sbjct: 73 QVHDVFVRYAKGSHLKIGLAVGGGKKKSDLVYERRSLV---AYDG----TTR----RDNGIQVFPE-------------------FGGQSAVDILVATPGRLMDHLDSTPGFTLQHLRFLVIDEADRLVNQPYQNWVGRVLEA-----------------------------------------SNSSNR--------FGSSVPVVRHGEKDQAN-------------------TGGELVSGMFGRPVPLRKMLFSATLTQDPQKLAVLGLKNPKHFDANQ 255
BLAST of mRNA_Ecto-sp13_S_contig1509.3847.1 vs. uniprot
Match: A0A058YZR3_FONAL (Uncharacterized protein n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058YZR3_FONAL) HSP 1 Score: 115 bits (287), Expect = 4.040e-25 Identity = 66/139 (47.48%), Postives = 82/139 (58.99%), Query Frame = 2
Query: 2 QVHTVFKRYARGTDLRVGLAIGQTNFLEEQLSLVGAVALEGNPVATARASFLRSQGRHMGPDPTKGGLILEGDVWTGGGAPAGGSSEVDIVVATPGRLLDHIAQTPGFTLQHLRYLVIDEADRLLNQSYQGWVKKVIKA 418
Q+H VF R GTDLRVGLA G + EQ S+V +P +A + G GP G AGG S +DI+V TPGRL+DH+AQTPGFTLQHLR+LVIDEADRL+N SY W+ +V++A
Sbjct: 294 QIHQVFSRLIAGTDLRVGLAAGIRSLSAEQASMV-------HPALSAFQPEDDAPGHVAGP-----------------GRLAGGHSALDILVCTPGRLMDHLAQTPGFTLQHLRFLVIDEADRLMNDSYHNWLPRVLEA 408 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1509.3847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1509.3847.1 >prot_Ecto-sp13_S_contig1509.3847.1 ID=prot_Ecto-sp13_S_contig1509.3847.1|Name=mRNA_Ecto-sp13_S_contig1509.3847.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=280bp AGSYRVQEVRERHRSPGRVGHRPDELPRGAAVARRGCRSRRKSGRNRPSEback to top mRNA from alignment at Ecto-sp13_S_contig1509:14135..16583+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1509.3847.1 ID=mRNA_Ecto-sp13_S_contig1509.3847.1|Name=mRNA_Ecto-sp13_S_contig1509.3847.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2449bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1509:14135..16583+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1509:14135..16583+ >mRNA_Ecto-sp13_S_contig1509.3847.1 ID=mRNA_Ecto-sp13_S_contig1509.3847.1|Name=mRNA_Ecto-sp13_S_contig1509.3847.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=840bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1509:14135..16583+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |