mRNA_Ecto-sp13_S_contig15089.3846.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15089.3846.1
Unique NamemRNA_Ecto-sp13_S_contig15089.3846.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15089.3846.1 vs. uniprot
Match: D8LHL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHL8_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 7.210e-46
Identity = 90/131 (68.70%), Postives = 100/131 (76.34%), Query Frame = 3 
Query:  285 RQDMFIDGLYEGEIRSTFHTKVGEQPDKLTLELAEGFTSYNENLIYLPPPLELKSVDAGKGWAQLGYH---GKPVAVAILFEDPSIDAPGTEIFHGFTTHLVVKGTGFHNQGSIKRGD*VYHPVAPILVFD 668
            +Q MF+ GL  GEI ST HTKVGEQPD+LTLELA+G T YN++  YLP PLELKSVD GKGWAQLG     GKP+ VAI+FEDPSIDA  TEIFHG TT LVVKGT F ++  IKR   VYH V PILVFD
Sbjct:   97 KQVMFMSGLCGGEISSTIHTKVGEQPDELTLELAQGSTWYNQDPAYLPRPLELKSVDDGKGWAQLGPTDGPGKPLTVAIVFEDPSIDASDTEIFHGHTTDLVVKGTSFRHRRIIKRDGWVYHTVPPILVFD 227
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BLAST of mRNA_Ecto-sp13_S_contig15089.3846.1 vs. uniprot
Match: A0A6H5JNN1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN1_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 3.780e-7
Identity = 40/103 (38.83%), Postives = 52/103 (50.49%), Query Frame = 3 
Query:  366 KLTLELAEGFTSYNENLIYLPPPLELKSVDAGKGWAQLGYHG--KPVAVAILFEDPSIDAPGTEIFHGFTTHLVVKGTGFHNQGSIKRGD*VYHPVAPILVFD 668
            K++L L +  +   +   +LP  L + SV A  G    G+ G      VAI+FEDPSI A  TEI+ G T  L V GTGF+N             V PILVF+
Sbjct:  255 KVSLNLPQPLSVLPQGPSFLPMALLVSSVKASPGTVDFGWLGVLNGRKVAIVFEDPSIQARNTEIYRGSTRELTVYGTGFNNV------------VQPILVFE 345
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15089.3846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHL8_ECTSI7.210e-4668.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNN1_9PHAE3.780e-738.83CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15089contigEcto-sp13_S_contig15089:315..2674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score68.9
Seed ortholog evalue1.7e-09
Seed eggNOG ortholog2880.D8LG95
Model size712
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2D060@1,2SCYI@2759
Cds size339
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15089.3846.1prot_Ecto-sp13_S_contig15089.3846.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15089 395..947 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462803.2950268-UTR-Ecto-sp13_S_contig15089:314..3941681462803.2950268-UTR-Ecto-sp13_S_contig15089:314..394Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15089 315..394 -
1681462803.3256288-UTR-Ecto-sp13_S_contig15089:947..9501681462803.3256288-UTR-Ecto-sp13_S_contig15089:947..950Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15089 948..950 -
1681462803.339317-UTR-Ecto-sp13_S_contig15089:2151..23451681462803.339317-UTR-Ecto-sp13_S_contig15089:2151..2345Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15089 2152..2345 -
1681462803.3486488-UTR-Ecto-sp13_S_contig15089:2578..26741681462803.3486488-UTR-Ecto-sp13_S_contig15089:2578..2674Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15089 2579..2674 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462803.3056588-CDS-Ecto-sp13_S_contig15089:394..6161681462803.3056588-CDS-Ecto-sp13_S_contig15089:394..616Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15089 395..616 -
1681462803.3155763-CDS-Ecto-sp13_S_contig15089:830..9471681462803.3155763-CDS-Ecto-sp13_S_contig15089:830..947Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15089 831..947 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15089.3846.1

>prot_Ecto-sp13_S_contig15089.3846.1 ID=prot_Ecto-sp13_S_contig15089.3846.1|Name=mRNA_Ecto-sp13_S_contig15089.3846.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
MFIDGLYEGEIRSTFHTKVGEQPDKLTLELAEGFTSYNENLIYLPPPLEL
KSVDAGKGWAQLGYHGKPVAVAILFEDPSIDAPGTEIFHGFTTHLVVKGT
GFHNQGSIKRGD*
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mRNA from alignment at Ecto-sp13_S_contig15089:315..2674-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15089.3846.1 ID=mRNA_Ecto-sp13_S_contig15089.3846.1|Name=mRNA_Ecto-sp13_S_contig15089.3846.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15089:315..2674- (Ectocarpus species13 EcNAP12_S_4_19m)
AACATCGCCGAAAGGGGCGTATTGACAGGGACCAACTTCAACGCGAACGG
CACCAAGCTGTACTTCGATCTGCCCGCTAGCAGGGCTACGTGCGGGGTGA
CAGGGAACAAATCCAGGTCGGCTCTCATTCGGGGTACCTAAGCTGTGCGT
GTGATGTGGCTTGTAAACGGCGTTGTGAAGAGAAAGTCACTACTCCGAGG
AGTTTTGATCATTGTCTCCCTCCTTTGCCATTGTATTCTCCTGCCCCGCC
ATCGGTCGTTGTGTCCCTTTTTGGTCTGTAGTGTTGTTATTGTCGTTCGC
AATTATGTTTTGTAGTTCTCTTGTTGCAGGTTTTGTCGTCAACAACGATC
GCTCTGTTCGTCAAGAATAGGAGAACCTTGTCCACGATGGTTGGTAAGAA
CGAGCTTGTTGAAGCTTGTCGCGATCGACACCGGCGCAGGCGCAGCGCAG
ATCAACCCTGAGGATGGAGGTCTTTTAATCGGCTCTATTGTTACCGGGGT
TGAAGACGATCATAGACAGGCAAGTCCAGATCAGCGCACGTGGACATGTT
TTTGGATCCTTGGGGGGACTATCGCACTAATAGCATCAAGAAATGAAATA
AATGAACGAGTCGATCACCCAATGAGCTACGACAACCCTACACATTTGGT
GACCTTCCCCCGCTCGTCTCGTCTGGGGCAAGTCGACACCGCCGTCGGTC
CGCCGCCCATTGTGCGTCCGTCCTCGGAAGCAATTTTACTGTGGAACAAA
TTCTCGGTGCATGGCGCCAACTTTAGCTTGGAGTGCACAGAGCTGTATTT
TGATCCTCCTCTGCCTGAGGAAGTAATCAATCGCTATGAGGTGGGGGAGG
AGACGTGATTCTGTACAACTTTGAGTCATGTGACATATTTTTGGTCAACT
CCCGCCGCTATGTTTCATCTTCGTTCCCCCTCTTCGTGGTGTAACCTCGC
CCTCACCGTATCGTTTCCGCTGCGGAAGGGTAGTAGACCGGACTTGGTCA
GTATCGTGTTGAAAAATCTCGAGCCAGGACCTCTCAAGGTGGTCGCGATC
GACACTGGCAGCGGCGTGGTTCACCACAACCCCGAGGACGGAGGCATCGT
GGTTGGCATTTTTTGTCGATTCTATCATCACGCAGCGACGTCACGGTGAA
AGAAGCCGAGAGCTTACACATCTACCAGTCAACCAAGCAGTTTCAGATCA
CGGGCAGTGGTTGAAATAAAAACAAAAAGGCGAGTGGGGATAATGTTTTT
CGACGTAATTCTCTTGTCTTCACGCACCCCTGGGTCGTCGGTGCCAACGT
AGCGTCCACAGCTGTAAGAGATGGAGTAACATACGTATCCGGAGACATGC
CGTCTAGCTAGCTGTCAAGCTAGCTACACCCGTTCCCTGTAGTTCCGACC
GTGTTCGAGAAGAAATATTTTGCTTAACTACAGCGTAGGCGAGGTGTACG
TGCGCGAAGCATGTGATTACGTATTCCTTTTCGCCGAGAAAATGCGAAAT
GGATGGACCTCGTTGCTCGGCTAATGTTTCCCACCCCTCATCTCTCGCCG
AAGATGGGAGCTTGTCAGATGACGGCGGCGATGGCTTAGGTGTTCGGATT
CCACCAAGGCACCGCTGTGCTGGATCGAGCTGCTGCCAGAAGCTTGCTTG
AGGCCCTCTCCAACTACCACTCACTGAACTACTGTGGTTGATTTGCTTGG
TCGGCGCTTGTTGTTGCTGTGTAGGATATGTTCATCGATGGTTTGTACGA
GGGTGAGATACGTTCCACTTTCCACACCAAGGTCGGCGAGCAACCGGACA
AGCTCACGCTCGAACTGGCCGAGGGGTTCACCTCCTACAATGAGGTACGG
GGTGGAACAGGCGCGCAACACACGCCTGGATGCTACCTGTAGACGGATCA
AGTTAGCTCCTGCGGCCTGCCGCCCCTTCGACTTTACCGCACTTTGCTGT
TGCCAAGTGTCGAGGCTTGCACCTATTTCCTTTGTTCTTGCCCATGGCCG
TTTGTCAATTCATCAACTCCGATGGTGGCCGACGGGTAATGACTGACACC
ACCGGCAGAACCTTATCTACCTTCCTCCACCTCTAGAGTTGAAGAGTGTG
GACGCCGGCAAGGGCTGGGCGCAGCTTGGCTACCATGGGAAACCTGTTGC
AGTTGCCATTTTGTTCGAAGACCCGAGCATCGATGCTCCAGGCACGGAGA
TTTTCCACGGATTCACGACACACCTGGTTGTCAAAGGCACCGGCTTCCAT
AACCAGGGAAGTATAAAGCGGGGGGACTGAGTGTACCACCCGGTAGCACC
TATCCTGGTCTTCGACCGCACATCGATCCGGAAATTGTCGAAGTCTTTGT
CAACGTGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15089:315..2674-

>mRNA_Ecto-sp13_S_contig15089.3846.1 ID=mRNA_Ecto-sp13_S_contig15089.3846.1|Name=mRNA_Ecto-sp13_S_contig15089.3846.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15089:315..2674- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCATCGATGGTTTGTACGAGGGTGAGATACGTTCCACTTTCCACAC
CAAGGTCGGCGAGCAACCGGACAAGCTCACGCTCGAACTGGCCGAGGGGT
TCACCTCCTACAATGAGAACCTTATCTACCTTCCTCCACCTCTAGAGTTG
AAGAGTGTGGACGCCGGCAAGGGCTGGGCGCAGCTTGGCTACCATGGGAA
ACCTGTTGCAGTTGCCATTTTGTTCGAAGACCCGAGCATCGATGCTCCAG
GCACGGAGATTTTCCACGGATTCACGACACACCTGGTTGTCAAAGGCACC
GGCTTCCATAACCAGGGAAGTATAAAGCGGGGGGACTGA
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