mRNA_Ecto-sp13_S_contig15088.3845.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15088.3845.1
Unique NamemRNA_Ecto-sp13_S_contig15088.3845.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15088.3845.1 vs. uniprot
Match: A0A6H5JJ25_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ25_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 9.630e-52
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 
Query:    1 RDNILFGCAFDPRRYDMVLEACALQSDLEILDSGDQTEIGEKGVNLSGGQQQRVSLARAVYADSDIVLLDDVLSAVDAHVGKHIFDKCIR 270
            RDNILFGCAFDPRRYDMVLEACALQSDLEILDSGDQTEIGEKGVNLSGGQQQRVSLARAVYADSDIVLLDDVLSAVDAHVGKHIFDKCIR
Sbjct:  807 RDNILFGCAFDPRRYDMVLEACALQSDLEILDSGDQTEIGEKGVNLSGGQQQRVSLARAVYADSDIVLLDDVLSAVDAHVGKHIFDKCIR 896
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BLAST of mRNA_Ecto-sp13_S_contig15088.3845.1 vs. uniprot
Match: D7G0B6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B6_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 2.450e-51
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 1 
Query:    1 RDNILFGCAFDPRRYDMVLEACALQSDLEILDSGDQTEIGEKGVNLSGGQQQRVSLARAVYADSDIVLLDDVLSAVDAHVGKHIFDKCIR 270
            RDNILFGCAFDPRRYDMVLEACAL+SDLEILDSGDQTEIGEKGVNLSGGQQQRVSLARAVYADSDIVLLDDVLSAVDAHVGKHIFDKCIR
Sbjct:  781 RDNILFGCAFDPRRYDMVLEACALESDLEILDSGDQTEIGEKGVNLSGGQQQRVSLARAVYADSDIVLLDDVLSAVDAHVGKHIFDKCIR 870
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BLAST of mRNA_Ecto-sp13_S_contig15088.3845.1 vs. uniprot
Match: A0A6H5K4L0_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4L0_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.580e-38
Identity = 67/90 (74.44%), Postives = 79/90 (87.78%), Query Frame = 1 
Query:    1 RDNILFGCAFDPRRYDMVLEACALQSDLEILDSGDQTEIGEKGVNLSGGQQQRVSLARAVYADSDIVLLDDVLSAVDAHVGKHIFDKCIR 270
            RDN+LFG  +DP RY  VL ACAL +DL++L++GDQTEIGEKG+NLSGGQQQRVSLARAVYA +D+ LLDDVLSAVDAHVG+HIF  C+R
Sbjct:  795 RDNVLFGSPYDPERYARVLSACALTADLDLLEAGDQTEIGEKGINLSGGQQQRVSLARAVYAQADVYLLDDVLSAVDAHVGEHIFKHCVR 884
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BLAST of mRNA_Ecto-sp13_S_contig15088.3845.1 vs. uniprot
Match: B1PS33_HORSE (ATP-binding cassette sub-family C member 2 (Fragment) n=1 Tax=Equus caballus TaxID=9796 RepID=B1PS33_HORSE)

HSP 1 Score: 132 bits (333), Expect = 1.850e-38
Identity = 62/89 (69.66%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:    1 RDNILFGCAFDPRRYDMVLEACALQSDLEILDSGDQTEIGEKGVNLSGGQQQRVSLARAVYADSDIVLLDDVLSAVDAHVGKHIFDKCI 267
            +DNILFG  FD +RY  VLEACAL  DLE+L  GD+ EIGEKG+NLSGGQ+QR++LARA Y +SDI +LDD LSAVDAHVGKHIF+K +
Sbjct:    3 KDNILFGAEFDEKRYQQVLEACALLPDLEVLPGGDRAEIGEKGINLSGGQKQRITLARATYQNSDIYILDDPLSAVDAHVGKHIFNKVL 91
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BLAST of mRNA_Ecto-sp13_S_contig15088.3845.1 vs. uniprot
Match: A0A183EEG6_9BILA (ABC transporter domain-containing protein n=1 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A183EEG6_9BILA)

HSP 1 Score: 132 bits (332), Expect = 4.120e-38
Identity = 66/89 (74.16%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:    4 DNILFGCAFDPRRYDMVLEACALQSDLEILDSGDQTEIGEKGVNLSGGQQQRVSLARAVYADSDIVLLDDVLSAVDAHVGKHIFDKCIR 270
            DNILFG   D  RY  VLEACAL  DL  L +GDQTEIGEKG+NLSGGQ+ RVSLARAVYAD+DIVLLDD LSAVDAHVG+HIF+  +R
Sbjct:   30 DNILFGAPLDSERYAAVLEACALVPDLATLPAGDQTEIGEKGINLSGGQKHRVSLARAVYADTDIVLLDDPLSAVDAHVGRHIFNHHLR 118
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BLAST of mRNA_Ecto-sp13_S_contig15088.3845.1 vs. uniprot
Match: A0A7S2IV57_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IV57_9EUKA)

HSP 1 Score: 143 bits (361), Expect = 7.430e-38
Identity = 67/89 (75.28%), Postives = 79/89 (88.76%), Query Frame = 1 
Query:    1 RDNILFGCAFDPRRYDMVLEACALQSDLEILDSGDQTEIGEKGVNLSGGQQQRVSLARAVYADSDIVLLDDVLSAVDAHVGKHIFDKCI 267
            RDNI+FG  FD  RY+ VL+ACAL+ DL++L +GD TEIGEKG+NLSGGQQQRV+LARA YADSDIV+LDDVLSAVDAHVG H+FD+CI
Sbjct:  784 RDNIVFGAPFDSTRYEAVLDACALRDDLKLLPAGDATEIGEKGINLSGGQQQRVNLARACYADSDIVILDDVLSAVDAHVGAHLFDQCI 872
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BLAST of mRNA_Ecto-sp13_S_contig15088.3845.1 vs. uniprot
Match: A0A7S2NAI8_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2NAI8_9EUKA)

HSP 1 Score: 143 bits (361), Expect = 7.470e-38
Identity = 67/89 (75.28%), Postives = 79/89 (88.76%), Query Frame = 1 
Query:    1 RDNILFGCAFDPRRYDMVLEACALQSDLEILDSGDQTEIGEKGVNLSGGQQQRVSLARAVYADSDIVLLDDVLSAVDAHVGKHIFDKCI 267
            RDNI+FG  FD  RY+ VL+ACAL+ DL++L +GD TEIGEKG+NLSGGQQQRV+LARA YADSDIV+LDDVLSAVDAHVG H+FD+CI
Sbjct:  784 RDNIVFGAPFDSTRYEAVLDACALRDDLKLLPAGDATEIGEKGINLSGGQQQRVNLARACYADSDIVILDDVLSAVDAHVGAHLFDQCI 872
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BLAST of mRNA_Ecto-sp13_S_contig15088.3845.1 vs. uniprot
Match: A0A7M7NKG5_STRPU (Uncharacterized protein n=3 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7NKG5_STRPU)

HSP 1 Score: 143 bits (360), Expect = 1.020e-37
Identity = 66/90 (73.33%), Postives = 80/90 (88.89%), Query Frame = 1 
Query:    1 RDNILFGCAFDPRRYDMVLEACALQSDLEILDSGDQTEIGEKGVNLSGGQQQRVSLARAVYADSDIVLLDDVLSAVDAHVGKHIFDKCIR 270
            R+NILFG  FD  RY MV+EAC+L+ DLEIL +GDQTEIGE+G+NLSGGQ+QRVSLARAVYAD+D+  LDD LSAVD+HVG+HIF+KCI+
Sbjct:  643 RENILFGTPFDEERYTMVMEACSLKQDLEILTNGDQTEIGERGINLSGGQKQRVSLARAVYADNDVYFLDDPLSAVDSHVGEHIFNKCIK 732
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BLAST of mRNA_Ecto-sp13_S_contig15088.3845.1 vs. uniprot
Match: T1J4L0_STRMM (Uncharacterized protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J4L0_STRMM)

HSP 1 Score: 142 bits (358), Expect = 1.890e-37
Identity = 67/89 (75.28%), Postives = 80/89 (89.89%), Query Frame = 1 
Query:    1 RDNILFGCAFDPRRYDMVLEACALQSDLEILDSGDQTEIGEKGVNLSGGQQQRVSLARAVYADSDIVLLDDVLSAVDAHVGKHIFDKCI 267
            RDNI FG  +D RRY+ V+EACAL+ DLE+L +GDQTEIGE+G+NLSGGQ+QRVSLARAVY+D+DIVLLDD LSAVD+HVGKHIFD+ I
Sbjct:  671 RDNITFGSVYDKRRYEKVIEACALKPDLELLPAGDQTEIGERGINLSGGQKQRVSLARAVYSDADIVLLDDPLSAVDSHVGKHIFDQVI 759
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BLAST of mRNA_Ecto-sp13_S_contig15088.3845.1 vs. uniprot
Match: A0A385NHM2_TEGGR (Multidrug resistance-associated protein 2 (Fragment) n=1 Tax=Tegillarca granosa TaxID=220873 RepID=A0A385NHM2_TEGGR)

HSP 1 Score: 130 bits (327), Expect = 2.600e-37
Identity = 61/87 (70.11%), Postives = 74/87 (85.06%), Query Frame = 1 
Query:    1 RDNILFGCAFDPRRYDMVLEACALQSDLEILDSGDQTEIGEKGVNLSGGQQQRVSLARAVYADSDIVLLDDVLSAVDAHVGKHIFDK 261
            R+NILFG ++D  +Y+ V+EACAL  DLEIL  GD  EIGEKG+NLSGGQ+QRVSLARAVY ++D+ L+DD LSAVD+HVGKHIFDK
Sbjct:   18 RENILFGSSYDKDKYNQVIEACALGPDLEILSGGDMAEIGEKGINLSGGQKQRVSLARAVYNNADVYLMDDPLSAVDSHVGKHIFDK 104
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15088.3845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJ25_9PHAE9.630e-52100.00ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G0B6_ECTSI2.450e-5198.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4L0_9PHAE1.580e-3874.44ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
B1PS33_HORSE1.850e-3869.66ATP-binding cassette sub-family C member 2 (Fragme... [more]
A0A183EEG6_9BILA4.120e-3874.16ABC transporter domain-containing protein n=1 Tax=... [more]
A0A7S2IV57_9EUKA7.430e-3875.28Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S2NAI8_9EUKA7.470e-3875.28Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7M7NKG5_STRPU1.020e-3773.33Uncharacterized protein n=3 Tax=Strongylocentrotus... [more]
T1J4L0_STRMM1.890e-3775.28Uncharacterized protein n=1 Tax=Strigamia maritima... [more]
A0A385NHM2_TEGGR2.600e-3770.11Multidrug resistance-associated protein 2 (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15088contigEcto-sp13_S_contig15088:3322..4200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score183.0
Seed ortholog evalue6.4e-44
Seed eggNOG ortholog2880.D7G0B6
Model size270
KEGG koko:K05665
KEGG TC3.A.1.208.8
KEGG Pathwayko01523,ko02010,ko04071,ko04977,ko05206,map01523,map02010,map04071,map04977,map05206
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
Cds size270
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462803.2530143-CDS-Ecto-sp13_S_contig15088:3321..33991681462803.2530143-CDS-Ecto-sp13_S_contig15088:3321..3399Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15088 3322..3399 +
1681462803.2691584-CDS-Ecto-sp13_S_contig15088:4008..42001681462803.2691584-CDS-Ecto-sp13_S_contig15088:4008..4200Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15088 4009..4200 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15088.3845.1prot_Ecto-sp13_S_contig15088.3845.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15088 3322..4200 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15088.3845.1

>prot_Ecto-sp13_S_contig15088.3845.1 ID=prot_Ecto-sp13_S_contig15088.3845.1|Name=mRNA_Ecto-sp13_S_contig15088.3845.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
RDNILFGCAFDPRRYDMVLEACALQSDLEILDSGDQTEIGEKGVNLSGGQ
QQRVSLARAVYADSDIVLLDDVLSAVDAHVGKHIFDKCIR
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mRNA from alignment at Ecto-sp13_S_contig15088:3322..4200+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15088.3845.1 ID=mRNA_Ecto-sp13_S_contig15088.3845.1|Name=mRNA_Ecto-sp13_S_contig15088.3845.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=879bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15088:3322..4200+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGATAACATCTTGTTCGGCTGCGCGTTCGATCCCCGGCGCTACGACAT
GGTTCTTGAGGCGTGCGCTCTCCAGTCGGTGAGATATATCACCTCTTTTT
TCTTGTGGGATTCCTGTCCGCTGCACTTGACGCCCTTGCCGTTCTTCGTC
CCATATCTTGCGGCTTGTGCCTGCTACAGCATCCGGTGTTTGCGGTTTTC
CATGTGTGCTGGAACAACCGTTATTCACTCTCGTTGGAATTTGTGGAGAA
CTCATCCGTTCCAGGACACGGAGGGGTGGGGGCCGACGGATCGTATTGGA
GGTTGGGGTAACGCCTCTCACCCCCACCGGCGTTCATTTAAAAACCCTGG
CGCAGGGTCTTAATTAATCCTATTTATTATTAACGACTTGGAAATCCTCG
ACCCTATTCATGATTAACGACTTGGAAATCCTCGACTGTGGGGATCATAG
ATGGTACTGGGAGGGGACTCTCATACGCTAACGCCTCCGCTACAATAGCC
TTGGTTGGCCCTGTCCCTCTATCTTAACCCTACACATCGAAACGTCGTGC
TTGGAAAGTCCTCGGGTCCGGGGACCAGGTAGGCATGGTGTTGAAAGAAG
GGCATGGTGCCTACACCTCCATTCAGACCCTACGTAGTGCATGGTCTTGA
CTTCATGTTTACGAACAACGAATTCCGCCTCTGCCAGGACTTGGAAATCC
TTGACTCCGGAGACCAGACCGAGATCGGAGAGAAGGGGGTCAACCTTTCG
GGGGGGCAGCAGCAGCGGGTCAGCCTTGCACGGGCGGTGTACGCGGACTC
GGACATCGTGCTGCTCGATGACGTCCTCAGCGCCGTCGACGCCCACGTGG
GCAAGCACATCTTCGACAAGTGCATTCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15088:3322..4200+

>mRNA_Ecto-sp13_S_contig15088.3845.1 ID=mRNA_Ecto-sp13_S_contig15088.3845.1|Name=mRNA_Ecto-sp13_S_contig15088.3845.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15088:3322..4200+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGATAACATCTTGTTCGGCTGCGCGTTCGATCCCCGGCGCTACGACAT
GGTTCTTGAGGCGTGCGCTCTCCAGTCGGACTTGGAAATCCTTGACTCCG
GAGACCAGACCGAGATCGGAGAGAAGGGGGTCAACCTTTCGGGGGGGCAG
CAGCAGCGGGTCAGCCTTGCACGGGCGGTGTACGCGGACTCGGACATCGT
GCTGCTCGATGACGTCCTCAGCGCCGTCGACGCCCACGTGGGCAAGCACA
TCTTCGACAAGTGCATTCGC
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