mRNA_Ecto-sp13_S_contig15083.3842.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15083.3842.1
Unique NamemRNA_Ecto-sp13_S_contig15083.3842.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15083.3842.1 vs. uniprot
Match: A0A6H5JGP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP4_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 1.470e-51
Identity = 97/107 (90.65%), Postives = 100/107 (93.46%), Query Frame = -1 
Query:    1 SSEAVNGGEPAAAAAGADVPTPPRRSSSTAVEDAMDVDREGKADGEGDSAATGRNGVLLKESQHPVKPKTPPINLPQIRERFVRGCYVPAPGSYLVQTQQAGPARGE 321
            SS AVN GEPAAA AGADVPTPPRRS STA+EDAMDVD EGKA GEGDSAATGRNGVLLKESQHPVKPKTPPINLPQIRERFVRGCYVPAPGSYLVQ+Q+A PARGE
Sbjct:  236 SSVAVNVGEPAAAVAGADVPTPPRRSPSTALEDAMDVDSEGKAGGEGDSAATGRNGVLLKESQHPVKPKTPPINLPQIRERFVRGCYVPAPGSYLVQSQEAVPARGE 342
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BLAST of mRNA_Ecto-sp13_S_contig15083.3842.1 vs. uniprot
Match: D8LRP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP6_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 4.100e-47
Identity = 89/99 (89.90%), Postives = 92/99 (92.93%), Query Frame = -1 
Query:    1 EPAAAAAGADVPTPPRRSSSTAVEDAMDVDREGKADGEGDSAATGRNGVLLKESQHPVKPKTPPINLPQIRERFVRGCYVPAPGSYLVQTQQAGPARGE 297
            EPAAA AGADVPTPPRRS STAVEDAM+VD EGKAD EGD AATGRNGVLLKESQHPVKPK PPINLPQIRERFVRGCYVPAPGSYLVQ+Q+A PARGE
Sbjct:  247 EPAAAVAGADVPTPPRRSPSTAVEDAMNVDSEGKADEEGDLAATGRNGVLLKESQHPVKPKAPPINLPQIRERFVRGCYVPAPGSYLVQSQEAVPARGE 345
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15083.3842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JGP4_9PHAE1.470e-5190.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRP6_ECTSI4.100e-4789.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15083contigEcto-sp13_S_contig15083:2971..3293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size325
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462803.0703244-CDS-Ecto-sp13_S_contig15083:2970..32911681462803.0703244-CDS-Ecto-sp13_S_contig15083:2970..3291Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15083 2971..3291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15083.3842.1prot_Ecto-sp13_S_contig15083.3842.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15083 2971..3291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15083.3842.1

>prot_Ecto-sp13_S_contig15083.3842.1 ID=prot_Ecto-sp13_S_contig15083.3842.1|Name=mRNA_Ecto-sp13_S_contig15083.3842.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
LPPRRPGLLGLNQVGPGRGNVAPPYEALPNLGKVDRRRLRLDRVLRLLQQ
HTVPPRGRRIALPVGLSLTIDIHGILHSRRRRTPRGGRDIRTRRRSSRLP
SVNRLRR
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mRNA from alignment at Ecto-sp13_S_contig15083:2971..3293+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15083.3842.1 ID=mRNA_Ecto-sp13_S_contig15083.3842.1|Name=mRNA_Ecto-sp13_S_contig15083.3842.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=323bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15083:2971..3293+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCCCCCGCGCAGGCCCGGCCTGTTGGGTTTGAACCAAGTAGGACCCGG
GCGCGGGAACGTAGCACCCCCTTACGAAGCGCTCCCTAATCTGGGGAAGG
TTGATCGGCGGCGTCTTCGGCTTGACAGGGTGCTGCGACTCCTTCAGCAG
CACACCGTTCCGCCCCGTGGCCGCCGAATCGCCCTCCCCGTCGGCCTTTC
CCTCACGATCGACATCCATGGCATCCTCCACAGCCGTAGACGACGAACGC
CGAGGGGGGGTAGGGACATCCGCACCCGCCGCCGCAGCAGCAGGCTCCCC
TCCGTTAACCGCCTCCGACGATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15083:2971..3293+

>mRNA_Ecto-sp13_S_contig15083.3842.1 ID=mRNA_Ecto-sp13_S_contig15083.3842.1|Name=mRNA_Ecto-sp13_S_contig15083.3842.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15083:2971..3293+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCCCCCGCGCAGGCCCGGCCTGTTGGGTTTGAACCAAGTAGGACCCGG
GCGCGGGAACGTAGCACCCCCTTACGAAGCGCTCCCTAATCTGGGGAAGG
TTGATCGGCGGCGTCTTCGGCTTGACAGGGTGCTGCGACTCCTTCAGCAG
CACACCGTTCCGCCCCGTGGCCGCCGAATCGCCCTCCCCGTCGGCCTTTC
CCTCACGATCGACATCCATGGCATCCTCCACAGCCGTAGACGACGAACGC
CGAGGGGGGGTAGGGACATCCGCACCCGCCGCCGCAGCAGCAGGCTCCCC
TCCGTTAACCGCCTCCGACGA
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