mRNA_Ecto-sp13_S_contig15083.3841.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15083.3841.1
Unique NamemRNA_Ecto-sp13_S_contig15083.3841.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15083.3841.1 vs. uniprot
Match: D8LRP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP6_ECTSI)

HSP 1 Score: 380 bits (977), Expect = 6.860e-117
Identity = 281/311 (90.35%), Postives = 285/311 (91.64%), Query Frame = 1 
Query:    1 KSPSSSRSGSLSSPPLPSQSPKEEATEKAAESPAPATPSGTAVTKTVSNASKAWKASKPTRRSSSSWRQTRPTPVLPLTRDSGRLGGAAKLTFDYEPLLDWAGLRADIAGMVGRMVQWAEDWKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVQQNLEDAKQFLANADDLYSKHLERAERERYAYAVKRSVDDLIRESNLAAVQGEFRTEPFPLRVYQQYLTTYRPARDLRPEDRKAIEVDLISDLPDGYVTEAHGSNDDYSISEAWMRTYMKESSASKASASSA 933
            K PS SRSGS SSPPLPSQSPKEEAT            SGTAVTKT S ASKA   SKPT ++SSS  QTRPTPVLPLTRDSGRLGGAAKLTFDYEPLLDWAGLRADIAGMVGRMV+WAED  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVQQNLEDAK+FLANADDLYSKHLERAERERYAYAVKRSVDDLIRESNLAAVQGEFRTEPFPLRVYQQYLTTYRPARDLRPEDRKAIEVDLISDLPDGYVTEAHGSNDDYSISEAWMRTYMKESSASKA ASSA
Sbjct:  403 KRPSFSRSGS-SSPPLPSQSPKEEATXXXXXXXXXXXXSGTAVTKTASKASKA---SKPTGKASSSSLQTRPTPVLPLTRDSGRLGGAAKLTFDYEPLLDWAGLRADIAGMVGRMVEWAEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVQQNLEDAKRFLANADDLYSKHLERAERERYAYAVKRSVDDLIRESNLAAVQGEFRTEPFPLRVYQQYLTTYRPARDLRPEDRKAIEVDLISDLPDGYVTEAHGSNDDYSISEAWMRTYMKESSASKAGASSA 709
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BLAST of mRNA_Ecto-sp13_S_contig15083.3841.1 vs. uniprot
Match: A0A6H5JGP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP4_9PHAE)

HSP 1 Score: 324 bits (830), Expect = 3.660e-97
Identity = 246/303 (81.19%), Postives = 251/303 (82.84%), Query Frame = 1 
Query:    7 PSSSRSGSLSSPPLPSQSPKEEATEKAAESPAPATPSGTAVTKTVSNASKAWKASKPTRRSSSSWRQTRPTPVLPLTRDSGRLGGAAKLTFDYEPLLDWAGLRADIAGMVGRMVQWAEDWKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVQQNLEDAKQFLANADDLYSKHLERAERE--------------------------RYAYAVKRSVDDLIRESNLAAVQGEFRTEPFPLRVYQQYLTTYRPARDLRPEDRKAIEVDLISDLPDGYVTE 837
            PSSSRSGS SSPPLPSQSPKE AT KAAE PAPATPSGTAVTKT S      KA KPT R+SS   QTRPTPVLPLTRDSGRLGGAAKLTFDYEPLLDWAGLRADIAGMVGR+VQWAEDWK    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +QQNLEDA +FLANADDLYSKHLERAERE                          RYAYAVKRSVDDLIRESNLAAVQGEFR EPFPLRVYQQYLTTYRPARDLRPEDRKAIEVDL+SDLPDGYVTE
Sbjct:  402 PSSSRSGS-SSPPLPSQSPKEVATAKAAEPPAPATPSGTAVTKTAS------KALKPTGRASSPSLQTRPTPVLPLTRDSGRLGGAAKLTFDYEPLLDWAGLRADIAGMVGRIVQWAEDWKSEREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEEDMQQNLEDAMRFLANADDLYSKHLERAEREVFLLASNICICFSNCSDACNTRSRGQRYAYAVKRSVDDLIRESNLAAVQGEFRAEPFPLRVYQQYLTTYRPARDLRPEDRKAIEVDLVSDLPDGYVTE 697
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15083.3841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRP6_ECTSI6.860e-11790.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGP4_9PHAE3.660e-9781.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15083contigEcto-sp13_S_contig15083:2..2799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score387.5
Seed ortholog evalue5.9e-105
Seed eggNOG ortholog2880.D8LRP6
Model size935
KEGG koko:K03231,ko:K22156
KEGG Pathwayko03013,ko05134,map03013,map05134
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1080@2759
Cds size933
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012,ko03016,ko03019,ko03036,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462803.0999188-CDS-Ecto-sp13_S_contig15083:2..981681462803.0999188-CDS-Ecto-sp13_S_contig15083:2..98Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15083 3..98 -
1681462803.1097941-CDS-Ecto-sp13_S_contig15083:458..6051681462803.1097941-CDS-Ecto-sp13_S_contig15083:458..605Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15083 459..605 -
1681462803.1204755-CDS-Ecto-sp13_S_contig15083:1431..15001681462803.1204755-CDS-Ecto-sp13_S_contig15083:1431..1500Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15083 1432..1500 -
1681462803.1355605-CDS-Ecto-sp13_S_contig15083:2178..27991681462803.1355605-CDS-Ecto-sp13_S_contig15083:2178..2799Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15083 2179..2799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15083.3841.1prot_Ecto-sp13_S_contig15083.3841.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15083 3..2799 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15083.3841.1

>prot_Ecto-sp13_S_contig15083.3841.1 ID=prot_Ecto-sp13_S_contig15083.3841.1|Name=mRNA_Ecto-sp13_S_contig15083.3841.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=311bp
KSPSSSRSGSLSSPPLPSQSPKEEATEKAAESPAPATPSGTAVTKTVSNA
SKAWKASKPTRRSSSSWRQTRPTPVLPLTRDSGRLGGAAKLTFDYEPLLD
WAGLRADIAGMVGRMVQWAEDWKSEREQEKNQRRQRRRRRRCRADGCGTG
GDAKGATQEAGGEGEADEEDDDEEGEEHVQQNLEDAKQFLANADDLYSKH
LERAERERYAYAVKRSVDDLIRESNLAAVQGEFRTEPFPLRVYQQYLTTY
RPARDLRPEDRKAIEVDLISDLPDGYVTEAHGSNDDYSISEAWMRTYMKE
SSASKASASSA
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mRNA from alignment at Ecto-sp13_S_contig15083:2..2799-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15083.3841.1 ID=mRNA_Ecto-sp13_S_contig15083.3841.1|Name=mRNA_Ecto-sp13_S_contig15083.3841.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2798bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15083:2..2799- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGAGTCCATCGTCCTCGAGATCGGGGTCGTTGTCGTCGCCACCCCTACC
GTCCCAGTCCCCCAAGGAGGAGGCGACGGAAAAGGCGGCGGAATCGCCTG
CCCCCGCCACCCCCTCCGGTACTGCTGTGACGAAGACGGTTTCGAACGCT
TCGAAGGCTTGGAAGGCTTCGAAGCCGACCAGGAGATCCTCGTCGTCGTG
GCGGCAGACCCGGCCGACCCCTGTGTTGCCCCTTACGAGAGACTCCGGGA
GGCTCGGCGGCGCAGCGAAGCTGACCTTCGACTACGAGCCCCTGCTGGAC
TGGGCGGGGCTGCGCGCGGACATCGCGGGGATGGTGGGCAGGATGGTCCA
GTGGGCGGAGGACTGGAAGTCCGAAAGGGAGCAGGAGAAGAACCAGCGGC
GACAGCGACGGCGCCGACGGCGTTGTCGGGCGGATGGCTGCGGGACCGGG
GGCGACGCGAAAGGGGCGACGCAGGAAGCGGGGGGTGAGGGTGAGGCGGA
CGAGGAGGACGACGATGAGGAGGGAGAAGAACACGTGCAGCAAAACTTGG
AAGACGCCAAGCAGTTCTTGGCCAACGCGGACGATTTGTACTCCAAGCAC
CTGGAACGGGCGGAAAGGGAGGTGAGTTAAGGGAGGGAACATGAATGGGA
GCTGCAGGTTCGGATATTCGCGCTCGTAAAGACGGCGTCAGTGTAGCTCG
GTAGTATAAATGCGGTCTGAGTAATTTTTTTGTCGTTTTTTCTGCCTTTG
TCATCGTTGCATGCAATCTCGTCTGCATGCAGCCTGTCTAAAGCATCTGT
ACCCTCCCGTGTTCCTGGTTTGATCCGGGATCTAGCGCTAGCGAAAGCTT
TGACAATAGTGGTGCAAGCATTTTTTTTCTGTTGTTCGATATTGGGGGTC
CACACGGCGAAAGAGGTCGCATTTCGAAAGCATCTACAGTCCGCCTCCCT
TCCCCATAGTAGACGAAACACATGATGTATTATCGGAGATTTCTTGGTTC
CTCGTTCGTTCTTGTTTCCAGTAGTCGGTTCTCATTGATATTTTTTGCCT
GGATGGCCAACCAACCCTAAGCAGGGCAGGAGGTGGACATGTTCGGTGCT
GTTGTTCCTGCTGGCTTTGCGGGACTCGACTCATGTCGACTCATATCTAG
CGTGTATGTATAGTGAGTCTGGTTCAGGAGTCGGGTGCTGCAGTGCGTGG
GTTTCGACTGACTCGAGTCAGTTTTCTTTCTTGGCCTTTAATATCAGCAT
CTGCTTCTGAAACTGCTGTTCTGCTTGTAACACCCGTTTGCGAGGACAGA
GGTACGCCTACGCGGTCAAGCGGAGTGTGGATGATCTCATCAGGGAGAGC
AACTTGGCGGCCGTACAGGTGCGCACAGTATTTAGGCGGTTGTCTCTAAG
GAGGGGAGTCAAGGCTGGGCGTTTTGTTCTGCTTGTCGATGTTATTTAGG
CGTTTGTAAGTGGCACGGTTTACTTTCCTTGTCAATGTTTTTTTTTATCG
TGTGTAGAGGTAAATAGCAACATCGCCGTAGGCACCTGTCTGGAAACGTC
CTGTTGATGATCATGATCCTTGTAGTTTGCCTCTGGTCTGGTTGCATTTT
GATACCGTTGACTTTGTTTTCCCTGCCCAAGACTGCGCGTCCCTCCTTGC
CCTATATTTCCGGTGTTGATATTAACTCACAAAGTCTCTTCTTGACTTTT
TTTTTTGTTAGAAGGCAGGCATTGTGTCTTGACTCGTGAATATTAGCAAC
GCTGTCGCTGGTGTGTTGGTATGCTGTATGCGTAGGAGGGGTGCGTAGGA
GGGGCTCTGTGACCCGTCTCGAGTGAGATAGTATGGTATAATCGTGATGG
GTTCCCTGCGCACCTCCCTCATGCCGTGGACGAACCATCCTCAAATATTC
GTATGACTATGTATATGTGCATAGACTCAAATGGATACATGCTGAGGGAC
CTACTAGTCCGAAGGATGATTGACCCCCTCCCTCCCACCGTGTCGAATCG
ATAGCATTCCACTGTTCCACTTTCTTCTCCATGGATATTCAATGGACTGA
ACCGGACTGGGATTACCGCAACGCCGTTCTCTTCTAGATGCGGATGTTTT
TGAGATGAACTCGATCTAACTGGGATTTTCGCACTCCGTGTTCTTCCGAA
TGGATGTGTGGGGAATATCTGGATCTTACCTGAAATATAACCAGGGAGAG
TTTCGGACGGAGCCGTTCCCGCTTCGAGTGTACCAGCAGTACCTGACGAC
GTACAGGCCGGCTCGTGATCTTCGCCCAGAGGATCGCAAGGCGATCGAGG
TGGATCTGATATCGGACCTCCCGGACGGCTATGTGACCGAGGTACTCCAT
GTTCAAGGCGTGTTGGAAACCGCCTTTTCAGCGTCTTGGCTTGCGGGTCG
TTGCACCATGCCCCTTGACTTTCTCTCTCTTGTTTTAAGCAGGCAAAACT
GAGAGGACGTGTGTTTTGCCTGAAGATGAGGTATTATTCTAGCTATGACC
TGTTTCCGGATGTAATCGTGGTGTTCGTTGAATAATGGCAAATGTTGCAG
CGTGATTGGGTCGGTTGTTTCCGAGTAGTGTGATATCACCCCTGTCACGC
TCGCCCACTTTTTTCTTTCCTTGGCCTTCTGTCTCCTCTCCCTGTTTTTT
TTTATCGTCCCTGCAAAATTTTACACGGAAAATCTGGGCGAATGGATCCA
GGCGCACGGCTCCAACGATGACTACAGCATCAGTGAGGCCTGGATGCGGA
CTTACATGAAGGAGTCATCCGCTTCCAAAGCTAGTGCTTCCTCTGCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15083:2..2799-

>mRNA_Ecto-sp13_S_contig15083.3841.1 ID=mRNA_Ecto-sp13_S_contig15083.3841.1|Name=mRNA_Ecto-sp13_S_contig15083.3841.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=933bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15083:2..2799- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGAGTCCATCGTCCTCGAGATCGGGGTCGTTGTCGTCGCCACCCCTACC
GTCCCAGTCCCCCAAGGAGGAGGCGACGGAAAAGGCGGCGGAATCGCCTG
CCCCCGCCACCCCCTCCGGTACTGCTGTGACGAAGACGGTTTCGAACGCT
TCGAAGGCTTGGAAGGCTTCGAAGCCGACCAGGAGATCCTCGTCGTCGTG
GCGGCAGACCCGGCCGACCCCTGTGTTGCCCCTTACGAGAGACTCCGGGA
GGCTCGGCGGCGCAGCGAAGCTGACCTTCGACTACGAGCCCCTGCTGGAC
TGGGCGGGGCTGCGCGCGGACATCGCGGGGATGGTGGGCAGGATGGTCCA
GTGGGCGGAGGACTGGAAGTCCGAAAGGGAGCAGGAGAAGAACCAGCGGC
GACAGCGACGGCGCCGACGGCGTTGTCGGGCGGATGGCTGCGGGACCGGG
GGCGACGCGAAAGGGGCGACGCAGGAAGCGGGGGGTGAGGGTGAGGCGGA
CGAGGAGGACGACGATGAGGAGGGAGAAGAACACGTGCAGCAAAACTTGG
AAGACGCCAAGCAGTTCTTGGCCAACGCGGACGATTTGTACTCCAAGCAC
CTGGAACGGGCGGAAAGGGAGAGGTACGCCTACGCGGTCAAGCGGAGTGT
GGATGATCTCATCAGGGAGAGCAACTTGGCGGCCGTACAGGGAGAGTTTC
GGACGGAGCCGTTCCCGCTTCGAGTGTACCAGCAGTACCTGACGACGTAC
AGGCCGGCTCGTGATCTTCGCCCAGAGGATCGCAAGGCGATCGAGGTGGA
TCTGATATCGGACCTCCCGGACGGCTATGTGACCGAGGCGCACGGCTCCA
ACGATGACTACAGCATCAGTGAGGCCTGGATGCGGACTTACATGAAGGAG
TCATCCGCTTCCAAAGCTAGTGCTTCCTCTGCT
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