mRNA_Ecto-sp13_S_contig15080.3838.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15080.3838.1
Unique NamemRNA_Ecto-sp13_S_contig15080.3838.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15080.3838.1 vs. uniprot
Match: D7FSI5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSI5_ECTSI)

HSP 1 Score: 330 bits (847), Expect = 7.190e-108
Identity = 182/208 (87.50%), Postives = 191/208 (91.83%), Query Frame = 3 
Query:    3 RQEAGATATSTPVDTWYEQHAFTAAPDRKDAAEHGGGTNDHAQQANHARKRNSDKLAGLRTAVLEVETPSPKAHEMREAFKTDNENAIIRPSGSTPPTPPSTAPASASTGDAAAAISAPALDTEQQGTVEKQLRTEEHSSTAAAVVADEETLLPTEPQEVEEEGKGRKRFRWIGRIASRVSNVGKRVRGRVTRIGANDTTPGEEKYSS 626
            RQEAGATATSTPVDTW+EQHAFTAAPDRKDAAEHGGG+NDHA+QANHARKRNS+KLAGLRTAVLE    SPKA EMREAFKT+N NAI RP+GSTPPTPPSTAPASASTGD AAAISAPAL TEQQGTVEKQLR EEHSSTAAAVVAD E LLPTEP EVEE GKGRKRFRWIGR+AS VSNVGKRVRGRVTRIGA DTTPGEE++ S
Sbjct:   75 RQEAGATATSTPVDTWHEQHAFTAAPDRKDAAEHGGGSNDHAKQANHARKRNSEKLAGLRTAVLE----SPKAREMREAFKTNNGNAIGRPNGSTPPTPPSTAPASASTGDVAAAISAPALGTEQQGTVEKQLRAEEHSSTAAAVVADGEALLPTEPLEVEE-GKGRKRFRWIGRVASSVSNVGKRVRGRVTRIGAKDTTPGEEEHRS 277
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15080.3838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSI5_ECTSI7.190e-10887.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15080contigEcto-sp13_S_contig15080:1014..4260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1460
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_003840.1
Cds size402
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462802.934567-UTR-Ecto-sp13_S_contig15080:1013..18441681462802.934567-UTR-Ecto-sp13_S_contig15080:1013..1844Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15080 1014..1844 -
1681462802.9547052-UTR-Ecto-sp13_S_contig15080:2246..22641681462802.9547052-UTR-Ecto-sp13_S_contig15080:2246..2264Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15080 2247..2264 -
1681462802.9638846-UTR-Ecto-sp13_S_contig15080:4051..42601681462802.9638846-UTR-Ecto-sp13_S_contig15080:4051..4260Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15080 4052..4260 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462802.9450192-CDS-Ecto-sp13_S_contig15080:1844..22461681462802.9450192-CDS-Ecto-sp13_S_contig15080:1844..2246Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15080 1845..2246 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15080.3838.1prot_Ecto-sp13_S_contig15080.3838.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15080 1845..2246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15080.3838.1

>prot_Ecto-sp13_S_contig15080.3838.1 ID=prot_Ecto-sp13_S_contig15080.3838.1|Name=mRNA_Ecto-sp13_S_contig15080.3838.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp
MREAFKTDNENAIIRPSGSTPPTPPSTAPASASTGDAAAAISAPALDTEQ
QGTVEKQLRTEEHSSTAAAVVADEETLLPTEPQEVEEEGKGRKRFRWIGR
IASRVSNVGKRVRGRVTRIGANDTTPGEEKYSS*
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mRNA from alignment at Ecto-sp13_S_contig15080:1014..4260-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15080.3838.1 ID=mRNA_Ecto-sp13_S_contig15080.3838.1|Name=mRNA_Ecto-sp13_S_contig15080.3838.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3247bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15080:1014..4260- (Ectocarpus species13 EcNAP12_S_4_19m)
CACGCCAAGAGGCTGGTGCCACGGCAACATCAACCCCTGTCGATACTTGG
TACGAGCAGCACGCGTTTACGGCGGCGCCAGATCGAAAGGATGCTGCTGA
ACACGGAGGAGGCACGAACGATCACGCGCAGCAGGCGAACCACGCGAGGA
AGAGGAACTCGGACAAGCTTGCTGGATTGAGGACGGCTGTTCTCGAGGTA
GAAACCCCGGTGTGTACCTACGTGTTCCGCGCGTTCCGATGAGTGTCTAC
ATTTAGAACCAGAACTGTGGGTGATTTTCACGAGCGTCTTTTCTGCAGGA
CGGCAGCGGTACAACCGCCGACGATCTACCTCTTCCCGGGTCTATATGCA
ACGTACGTGTACCAGACGACTCGCCCACCTAACAACAACGGCAGATACGT
AGATACCTCGCCTGGGAGCTCGATCCATCTTGCAGGTACAAACGTAGCGG
TCCTTGTAGAAGGCCGCACCGTGGGGAGGGATTTGACCGGCCTTATACAT
GTAACGGGCAACCGTCATTTGGTCATTTGTCACAGAGTTCAGAATAGAAG
GCAATCCTCACGTCTTGTTGTGTGTAACGCGATTTCACCGGGCACGTACA
CGCGTATGCGGCGTCCGGCCTTGCAGCGCCCCACATTCATTCGTACGTAC
AGGTTAAAAACTCTCTCTATCGGAGGCTCGCGCCATAACGGCCGCGGAGT
TGTTGTTTGGGCCCGGCTTTTCCCGCTGAAACTGCCCCGTACAGGACCAC
GTTCTTCGTATTTCTCTCGGGGTGGGGAGTACAACATGCTTCTGTACAAC
TATGAAGTACGGAGTACAGCAGTAGTGCAAGAGGTTTATTTCACCTCATG
CGTTGGCAACAGCAGTGGCACAAAATACATTCAGCTGAGATCTTAGATGT
CAGGACTTCCCTATACATCAAACACAACCCTTAGCCTCAGCGATCATCCT
TTACATGAGGCATTCGAAAGGCAGTGAAACGTACGGCATCGTGGAGCAAC
TCTCAAACTTGTTGATCCACAAAGGTGACCTTGGGCGTTATACTACAAGC
AGATTGTGGACGCACGTTTGTACGAAGTACACAGCTACAGCTCCACAGTC
GCACCACCCACCCTGCTCTGTCGTCTTCGACTCAAACTAACCCCACGAGC
CATGTGTCAACAACAATCAAAAGCAGCGCGCATTGACGCCTGAATGCGAA
AAGTGCCGGGTATTTCCATGCCTTGTTTCTCGTCGTCCGCGTCTATGCTG
TCGTCTTCGTCCAGAAGACCCAGCTCGTCGTTCTGGCTGGGGAAGGTGTC
AAGCACCGCGAAGCACGCTTACAAATGACACCGCCGTATCTGGACAGATG
ATTTTACCATGCAGATTATGATCTTCATCAGTTAAAGTGCTAGTAAATTC
GTGTGCAAAGCAACACAACAATGAACAACATCACCAACGATGACGGCTAT
GCGAAAGGAAAATGGAGATCACGGTGAAATCAAACACGTGGTGTTTGTCC
TTGTGTGCCTCCGGTTTGTGCCTCAACCGCCCCTCTTTTCTTTTTTGTGT
ATGCACCAACACAACCGTGGGCACACCCGTTAGAAACTATACTTATGCGT
GGAGACAAGAGCAGTCGCTTTCGCCAATCGCTGCCTGCTGGACGAGCAGT
CCGAGACATGGGACGCCGTCCTGTTTCCACCCGCTGCTTTTTGTCTCTGC
CGCTCTCTTTGACATCTGTTGTTCTCAAATAAGAAGACCTCACAGGAGAT
CTTGCCCTCCACGTGCCTTCAGTACATTCCGGCATATTGAACGCTCCGTT
GAGATAAAGGAAATTCCCTTTCATGTCGCCCAAGGCCCGGGTGTTTATGG
CACTACTGTAGTTGAGCAAGGAAACAACTCTCCACCACATGTGCAATACA
ACTACGTCTTCAGAATGATCCGACGCACATATGCAACTTTCGTTTCCAGA
ATCCGAACTGTGCGCTCGTGCTGTTGCCAATGTCTGCTGTTCACAGAGCC
CGAAAGCACACGAAATGCGTGAAGCGTTTAAAACGGACAACGAGAATGCC
ATCATCCGACCAAGCGGCTCTACACCCCCTACTCCGCCATCAACCGCTCC
TGCTAGTGCTTCCACTGGTGACGCCGCTGCTGCTATCTCGGCGCCCGCTT
TGGACACTGAGCAACAAGGCACGGTCGAGAAGCAGCTCCGGACGGAAGAG
CACAGCTCGACCGCTGCTGCTGTGGTGGCCGACGAGGAGACACTGCTTCC
AACGGAGCCGCAGGAGGTAGAGGAGGAGGGGAAGGGTAGGAAGCGGTTCC
GATGGATTGGACGCATAGCGTCGAGGGTATCGAACGTGGGAAAGAGGGTA
AGGGGGCGGGTAACGCGAATCGGGGCGAACGATACAACACCGGGAGAAGA
GAAATACAGTTCCTGAAAACGCCTGACGAAATCCGACTGACTATGGTGTG
TAGATGGGAGTTTCGTGTAGCGTGTATATGTACCTGTGCAGCAGGTAGGG
CTGTTGCGTATGGGACTCGTTTGGTACAAGATACAGTATGATGGCGGTAT
TTTTTTGTTATTTTAGTGCGGTTGTCTAGTGGCTTTGGACTGGCTCGCTG
TGGGTGCCTTTTATCCGTACACACGCGGCACACAACGGAACGCCTTGCTT
TGTCTACGATCCACGGAGCAAGCAAGCCACAGAGATGTAGCGTCGACGCC
GGTCACCATCAAAGCAAGTATTTCTTGACAGAGTGCCCTCTCGTGCTGTA
AGGCTTTGGACCCCACCAGGCTTTGCGAGCGTTAGACGACAGCTTTCTGG
CAATGCGCCATGTGCGACCAGTCTACAGACATTTTAAGATAGTTGTGATA
TTTCTCGAAGAGTTTTCTTTTCAACTCGCGAAGGAGCCGATGTTGTACGG
CGGCATATGAATGTTTCCCGCTCCCCTATATTTTTCTGACAGTTTTTCTA
GAAGTTTACGTAGAGTTCGGGAGGAGGGAGAGGAAGGAGTACCCCACGGG
AATTCGCGTGGGCGAGTTTTTATCCCGTGCAAATTGTTTCGATTACGGCT
TGCGTAGAACGGTATGCCCTGACCGAAAAAGTCAACCGCCGAGCAAGATC
AAGGCCTGAGCCGGCAGAAAAAAATGTGCGGATTTTTTTTCGTTCTTTCA
GGTGCTCAGGTTCACACTGAATGTCTCGGTGGGCTTCACCAACAAACGAG
CCACGTGTTTGTATGGTTTGTTTTAGGGTCAACAGCTGTTCCGTATT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15080:1014..4260-

>mRNA_Ecto-sp13_S_contig15080.3838.1 ID=mRNA_Ecto-sp13_S_contig15080.3838.1|Name=mRNA_Ecto-sp13_S_contig15080.3838.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15080:1014..4260- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTGAAGCGTTTAAAACGGACAACGAGAATGCCATCATCCGACCAAG
CGGCTCTACACCCCCTACTCCGCCATCAACCGCTCCTGCTAGTGCTTCCA
CTGGTGACGCCGCTGCTGCTATCTCGGCGCCCGCTTTGGACACTGAGCAA
CAAGGCACGGTCGAGAAGCAGCTCCGGACGGAAGAGCACAGCTCGACCGC
TGCTGCTGTGGTGGCCGACGAGGAGACACTGCTTCCAACGGAGCCGCAGG
AGGTAGAGGAGGAGGGGAAGGGTAGGAAGCGGTTCCGATGGATTGGACGC
ATAGCGTCGAGGGTATCGAACGTGGGAAAGAGGGTAAGGGGGCGGGTAAC
GCGAATCGGGGCGAACGATACAACACCGGGAGAAGAGAAATACAGTTCCT
GA
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