mRNA_Ecto-sp13_S_contig1508.3836.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1508.3836.1
Unique NamemRNA_Ecto-sp13_S_contig1508.3836.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1508.3836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1508contigEcto-sp13_S_contig1508:11865..12407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size159
Hectar predicted targeting categorysignal peptide
Exons2
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462802.672102-CDS-Ecto-sp13_S_contig1508:11864..119431681462802.672102-CDS-Ecto-sp13_S_contig1508:11864..11943Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1508 11865..11943 +
1681462802.688863-CDS-Ecto-sp13_S_contig1508:12327..124071681462802.688863-CDS-Ecto-sp13_S_contig1508:12327..12407Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1508 12328..12407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1508.3836.1prot_Ecto-sp13_S_contig1508.3836.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1508 11865..12407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1508.3836.1

>prot_Ecto-sp13_S_contig1508.3836.1 ID=prot_Ecto-sp13_S_contig1508.3836.1|Name=mRNA_Ecto-sp13_S_contig1508.3836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp
VPSVGVDALSSCVLPRIFLFGTCFCLGVHAQLASTRSNANGERAGSRDRS
YLE
back to top

mRNA from alignment at Ecto-sp13_S_contig1508:11865..12407+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1508.3836.1 ID=mRNA_Ecto-sp13_S_contig1508.3836.1|Name=mRNA_Ecto-sp13_S_contig1508.3836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=543bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1508:11865..12407+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCCTAGTGTAGGCGTGGATGCGTTGTCCTCTTGTGTTTTACCTCGGAT
CTTCCTCTTCGGGACTTGCTTCTGCCTAGGTAAGTCGAGTTTCGGAAACT
ACCAAAAACTGACCAAAAACGTGAAACATCTGTTGAGCCCAGTTGAGGAA
CCGTACAGCGGCCATCTGTAGCACAACCCTCTGGAGGAAAAGCAGAAATC
CCTTGACAGTTGTTTCCCTGAAGGAGAGGTTCTCTGGGGGCGACACTACT
GCTGTACATCGGATGTTTATGGTATCTCGCCGCCATGATGTTAACTCCCC
ACAAGAAACAAACAAACATCGAGCTGCGCTTGCTCTTTTCCCATGTCACG
GACGTCGCTACTAGTCATTCGACTGAGAGCTGAAAGTCCCTTCTCCCCGA
TTTCCCGGTCCGTGTGTCGTGCTTTTCCTTTGTTTTGTGCGATTCACGGT
CTCAACTTAACAGGCGTTCACGCCCAGTTAGCAAGCACTCGGTCGAATGC
GAATGGCGAGCGGGCGGGCAGCAGGGACAGGAGCTACCTCGAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1508:11865..12407+

>mRNA_Ecto-sp13_S_contig1508.3836.1 ID=mRNA_Ecto-sp13_S_contig1508.3836.1|Name=mRNA_Ecto-sp13_S_contig1508.3836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1508:11865..12407+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCCTAGTGTAGGCGTGGATGCGTTGTCCTCTTGTGTTTTACCTCGGAT
CTTCCTCTTCGGGACTTGCTTCTGCCTAGGCGTTCACGCCCAGTTAGCAA
GCACTCGGTCGAATGCGAATGGCGAGCGGGCGGGCAGCAGGGACAGGAGC
TACCTCGAA
back to top