mRNA_Ecto-sp13_S_contig1508.3835.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1508.3835.1 vs. uniprot
Match: A0A6H5K7Z6_9PHAE (DUF4440 domain-containing protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7Z6_9PHAE) HSP 1 Score: 417 bits (1072), Expect = 1.410e-146 Identity = 210/217 (96.77%), Postives = 213/217 (98.16%), Query Frame = 1
Query: 1 MMNFGKMPAGRTASRLARVVSKSESNIHSSVRAAGSMNALLSTRSGLTVTQAATRLAAVKLPVRQMSGQADYAANYTADQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENGKWVMVEHHSSAMPKAPPGLKPAQH 651
MMNFGKMPAGRTASRLARVVSKSES+I SSVRA GSMNALLSTRSGLTVTQAATRL AVKLPVRQMSGQADYAANYT+DQKAVDAATRNWRD VT+NTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENGKWVMVEHHSSAMPKAPPGLKPAQH
Sbjct: 1 MMNFGKMPAGRTASRLARVVSKSESSIQSSVRAGGSMNALLSTRSGLTVTQAATRLTAVKLPVRQMSGQADYAANYTSDQKAVDAATRNWRDTVTSNTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENGKWVMVEHHSSAMPKAPPGLKPAQH 217
BLAST of mRNA_Ecto-sp13_S_contig1508.3835.1 vs. uniprot
Match: A0A6H5K6U8_9PHAE (DUF4440 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6U8_9PHAE) HSP 1 Score: 311 bits (797), Expect = 1.110e-105 Identity = 146/152 (96.05%), Postives = 151/152 (99.34%), Query Frame = 1
Query: 196 MSGQADYAANYTADQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENGKWVMVEHHSSAMPKAPPGLKPAQH 651
MSGQADYAANYTADQKAVDAATR+WRD VT+NTEDAPKKTAAIYADDALFWGTVSE+VRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFA+HAGAYTFAWAGADGAMTETRARFTFAYRRENGKWVM+EHHSSAMPKAPPGLKPAQH
Sbjct: 1 MSGQADYAANYTADQKAVDAATRHWRDTVTSNTEDAPKKTAAIYADDALFWGTVSEEVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAVHAGAYTFAWAGADGAMTETRARFTFAYRRENGKWVMIEHHSSAMPKAPPGLKPAQH 152
BLAST of mRNA_Ecto-sp13_S_contig1508.3835.1 vs. uniprot
Match: A0A6H5JT29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT29_9PHAE) HSP 1 Score: 186 bits (473), Expect = 7.840e-53 Identity = 91/144 (63.19%), Postives = 107/144 (74.31%), Query Frame = 1
Query: 229 TADQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENGK------WVMVEHHSSAMPKAPPGLKP 642
T DQKAV A T W+D VT T+DAPKKTAA+YA DA+ WGTVSE+VR TPE +YDYFDFFAR+PKL +V Y PAP R++G+FA+ AG YTFAW G DG E RARF+F +RR GK W +VEHHSS+MP AP LKP
Sbjct: 291 TPDQKAVAATTIVWKDTVTLGTDDAPKKTAALYAPDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRVVEYTPAPVRVYGEFAVEAGTYTFAWQGEDGKTVEKRARFSFTFRR--GKPGSPQPWTIVEHHSSSMPIAPAELKP 432
BLAST of mRNA_Ecto-sp13_S_contig1508.3835.1 vs. uniprot
Match: D7FUF8_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF8_ECTSI) HSP 1 Score: 187 bits (475), Expect = 4.630e-52 Identity = 89/144 (61.81%), Postives = 106/144 (73.61%), Query Frame = 1
Query: 229 TADQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENG----KWVMVEHHSSAMPKAPPGLKPAQ 648
T DQKAV A T W+D VT T+DAPKKTAA+YA DA+ WGTVSE+VR TPE +YDYFDFFAR+PKL +V Y PAP R++G FA+ AG YTFAW G DG E RARF+F +RR+ W +VEHHSS+MP AP LKP +
Sbjct: 285 TPDQKAVAATTIVWKDTVTLGTDDAPKKTAALYAADAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYTPAPVRVYGQFAVEAGTYTFAWQGDDGKTVEKRARFSFTFRRDKPGSPQPWTIVEHHSSSMPIAPAELKPVE 428
BLAST of mRNA_Ecto-sp13_S_contig1508.3835.1 vs. uniprot
Match: A0A6H5LB09_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB09_9PHAE) HSP 1 Score: 187 bits (476), Expect = 1.310e-50 Identity = 87/141 (61.70%), Postives = 106/141 (75.18%), Query Frame = 1
Query: 229 TADQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENGK----WVMVEHHSSAMPKAPPGLK 639
T D KAV T W++ VT TEDAPKKTAA+YA+DA+ WGTVSE+VR TPE +YDYFDFFAR+PKL +V Y PAP R++G FA+ AG YTFAW G DG E RARF+F +RR++ + W +VEHHSS+MP AP GLK
Sbjct: 1415 TPDMKAVSETTIVWKNTVTLGTEDAPKKTAALYAEDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYTPAPARVYGQFAVQAGTYTFAWQGNDGETVEKRARFSFTFRRDHPESPTPWTIVEHHSSSMPSAPDGLK 1555
BLAST of mRNA_Ecto-sp13_S_contig1508.3835.1 vs. uniprot
Match: A0A6H5K0Z5_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0Z5_9PHAE) HSP 1 Score: 181 bits (460), Expect = 8.980e-50 Identity = 88/143 (61.54%), Postives = 105/143 (73.43%), Query Frame = 1
Query: 229 TADQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENGK------WVMVEHHSSAMPKAPPGLK 639
T DQKAV T W+D VT T+DAPKKTAA+YA DA+ WGTVSE+VR TPE +YDYFDFFAR+PKL ++ Y PAP R++G+FA+ AG YTFAW G DG E RARF+F +RR GK W +VEHHSS+MP AP LK
Sbjct: 320 TPDQKAVAETTIVWKDTVTLGTDDAPKKTAALYAPDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLLEYTPAPVRVYGEFAVQAGTYTFAWEGDDGDTVEKRARFSFTFRR--GKPGSPRPWTIVEHHSSSMPDAPAELK 460
BLAST of mRNA_Ecto-sp13_S_contig1508.3835.1 vs. uniprot
Match: D7FN21_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN21_ECTSI) HSP 1 Score: 180 bits (456), Expect = 3.150e-49 Identity = 83/141 (58.87%), Postives = 103/141 (73.05%), Query Frame = 1
Query: 229 TADQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENGK----WVMVEHHSSAMPKAPPGLK 639
T + KA T W+D VT TEDAPKKT+A+Y +DA+ WGTVSE+VR TPE +YDYFDFFAR+PKL +V Y PAP R++G FA+ AG YTFAW G D E RARF+F +RR++ + W +VEHHSS+MP AP GLK
Sbjct: 290 TPEMKAGSETTIVWKDTVTLGTEDAPKKTSALYPEDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYSPAPARVYGQFAVQAGTYTFAWQGNDDETVEKRARFSFTFRRDHPESPTPWTIVEHHSSSMPSAPAGLK 430
BLAST of mRNA_Ecto-sp13_S_contig1508.3835.1 vs. uniprot
Match: A0A6H5JX02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX02_9PHAE) HSP 1 Score: 176 bits (445), Expect = 2.630e-48 Identity = 82/142 (57.75%), Postives = 101/142 (71.13%), Query Frame = 1
Query: 229 TADQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENGK---WVMVEHHSSAMPKAPPGLKPA 645
T DQKAV A W+D VT T+D P+KTA +YA DA WGTVSE+VR+TPE +Y YFD+FAR+P L +V Y P R++GDFA+ AG YTF+W DG E RARF+F +RR+ K W +VEHHSS+MP AP GLKPA
Sbjct: 184 TPDQKAVAATAVVWKDTVTMGTDDTPRKTADLYAQDATLWGTVSEEVRDTPEQIYAYFDYFARLPALRLVEYTPVAVRVYGDFAVQAGTYTFSWQDNDGTTVEKRARFSFTFRRDPSKPQQWAIVEHHSSSMPTAPAGLKPA 325
BLAST of mRNA_Ecto-sp13_S_contig1508.3835.1 vs. uniprot
Match: D7FUF9_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF9_ECTSI) HSP 1 Score: 175 bits (443), Expect = 4.550e-47 Identity = 82/142 (57.75%), Postives = 101/142 (71.13%), Query Frame = 1
Query: 229 TADQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENGK---WVMVEHHSSAMPKAPPGLKPA 645
T DQKAV A W+D VT T+D P+KTA +YA DA WGTVSE+VR+TPE +Y YFD+FAR+P L +V Y P R++GDFA+ AG YTF+W DG E RARF+F +RR+ K W +VEHHSS+MP AP GLKPA
Sbjct: 329 TPDQKAVAATAVVWKDTVTMGTDDTPRKTADLYAQDATLWGTVSEEVRDTPEQIYAYFDYFARLPALRLVEYTPVAVRVYGDFAVQAGTYTFSWQDNDGDTVEKRARFSFTFRRDPNKPQQWAIVEHHSSSMPTAPAGLKPA 470
BLAST of mRNA_Ecto-sp13_S_contig1508.3835.1 vs. uniprot
Match: A0A6H5JSB2_9PHAE (DUF4440 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JSB2_9PHAE) HSP 1 Score: 160 bits (404), Expect = 7.380e-45 Identity = 80/165 (48.48%), Postives = 106/165 (64.24%), Query Frame = 1
Query: 154 AATRLAAVKLPVRQMSGQADYAANYTADQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENGK---WVMVEHHSSAMPKAPPGLK 639
AAT + +PV + +G AA D+K V+ T W++ VT T DAP+KTA +YA D + WGTVSE+VR+TPE +YDYFD+FAR+P L + + P R++GDFA AG YTF W G DG E RARF+F +R + W +VEHHSS+MP +P LK
Sbjct: 80 AATAMGLTAVPVTRSAG----AAVTEGDRKGVEQTTIRWKEMVTLGTPDAPRKTADLYAVDGVLWGTVSEEVRDTPEEIYDYFDYFARLPNLRLSEFTPVSLRVYGDFATEAGTYTFKWQGEDGVPKEKRARFSFTFRSDPESPTSWTIVEHHSSSMPTSPLQLK 240 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1508.3835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1508.3835.1 >prot_Ecto-sp13_S_contig1508.3835.1 ID=prot_Ecto-sp13_S_contig1508.3835.1|Name=mRNA_Ecto-sp13_S_contig1508.3835.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=218bp MMNFGKMPAGRTASRLARVVSKSESNIHSSVRAAGSMNALLSTRSGLTVTback to top mRNA from alignment at Ecto-sp13_S_contig1508:7918..12407+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1508.3835.1 ID=mRNA_Ecto-sp13_S_contig1508.3835.1|Name=mRNA_Ecto-sp13_S_contig1508.3835.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4490bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1508:7918..12407+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1508:7918..12407+ >mRNA_Ecto-sp13_S_contig1508.3835.1 ID=mRNA_Ecto-sp13_S_contig1508.3835.1|Name=mRNA_Ecto-sp13_S_contig1508.3835.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=654bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1508:7918..12407+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |