mRNA_Ecto-sp13_S_contig1508.3834.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1508.3834.1
Unique NamemRNA_Ecto-sp13_S_contig1508.3834.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1508.3834.1 vs. uniprot
Match: A0A6H5K7Z6_9PHAE (DUF4440 domain-containing protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7Z6_9PHAE)

HSP 1 Score: 414 bits (1064), Expect = 1.320e-144
Identity = 208/217 (95.85%), Postives = 211/217 (97.24%), Query Frame = 1 
Query:    1 MMNFGKMPTGRTASRLARVVSKSESSIQSSVRAAGSMNALLSTRSGLTVTQSATRLAAVKLPVRHMSGQADYAANYTADQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENGKWVMVEHHSSAMPTAPPGLKPAQH 651
            MMNFGKMP GRTASRLARVVSKSESSIQSSVRA GSMNALLSTRSGLTVTQ+ATRL AVKLPVR MSGQADYAANYT+DQKAVDAATRNWRD VT+NTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENGKWVMVEHHSSAMP APPGLKPAQH
Sbjct:    1 MMNFGKMPAGRTASRLARVVSKSESSIQSSVRAGGSMNALLSTRSGLTVTQAATRLTAVKLPVRQMSGQADYAANYTSDQKAVDAATRNWRDTVTSNTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENGKWVMVEHHSSAMPKAPPGLKPAQH 217
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1508.3834.1 vs. uniprot
Match: A0A6H5K6U8_9PHAE (DUF4440 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6U8_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 2.330e-104
Identity = 145/152 (95.39%), Postives = 150/152 (98.68%), Query Frame = 1 
Query:  196 MSGQADYAANYTADQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENGKWVMVEHHSSAMPTAPPGLKPAQH 651
            MSGQADYAANYTADQKAVDAATR+WRD VT+NTEDAPKKTAAIYADDALFWGTVSE+VRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFA+HAGAYTFAWAGADGAMTETRARFTFAYRRENGKWVM+EHHSSAMP APPGLKPAQH
Sbjct:    1 MSGQADYAANYTADQKAVDAATRHWRDTVTSNTEDAPKKTAAIYADDALFWGTVSEEVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAVHAGAYTFAWAGADGAMTETRARFTFAYRRENGKWVMIEHHSSAMPKAPPGLKPAQH 152
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1508.3834.1 vs. uniprot
Match: A0A6H5JT29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT29_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 8.460e-53
Identity = 91/144 (63.19%), Postives = 107/144 (74.31%), Query Frame = 1 
Query:  229 TADQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENGK------WVMVEHHSSAMPTAPPGLKP 642
            T DQKAV A T  W+D VT  T+DAPKKTAA+YA DA+ WGTVSE+VR TPE +YDYFDFFAR+PKL +V Y PAP R++G+FA+ AG YTFAW G DG   E RARF+F +RR  GK      W +VEHHSS+MP AP  LKP
Sbjct:  291 TPDQKAVAATTIVWKDTVTLGTDDAPKKTAALYAPDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRVVEYTPAPVRVYGEFAVEAGTYTFAWQGEDGKTVEKRARFSFTFRR--GKPGSPQPWTIVEHHSSSMPIAPAELKP 432
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1508.3834.1 vs. uniprot
Match: D7FUF8_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF8_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 5.130e-52
Identity = 89/144 (61.81%), Postives = 106/144 (73.61%), Query Frame = 1 
Query:  229 TADQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENG----KWVMVEHHSSAMPTAPPGLKPAQ 648
            T DQKAV A T  W+D VT  T+DAPKKTAA+YA DA+ WGTVSE+VR TPE +YDYFDFFAR+PKL +V Y PAP R++G FA+ AG YTFAW G DG   E RARF+F +RR+       W +VEHHSS+MP AP  LKP +
Sbjct:  285 TPDQKAVAATTIVWKDTVTLGTDDAPKKTAALYAADAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYTPAPVRVYGQFAVEAGTYTFAWQGDDGKTVEKRARFSFTFRRDKPGSPQPWTIVEHHSSSMPIAPAELKPVE 428
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1508.3834.1 vs. uniprot
Match: A0A6H5LB09_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB09_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 2.260e-50
Identity = 87/145 (60.00%), Postives = 109/145 (75.17%), Query Frame = 1 
Query:  229 TADQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENGK----WVMVEHHSSAMPTAPPGLKPAQH 651
            T D KAV   T  W++ VT  TEDAPKKTAA+YA+DA+ WGTVSE+VR TPE +YDYFDFFAR+PKL +V Y PAP R++G FA+ AG YTFAW G DG   E RARF+F +RR++ +    W +VEHHSS+MP+AP GLK  ++
Sbjct: 1415 TPDMKAVSETTIVWKNTVTLGTEDAPKKTAALYAEDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYTPAPARVYGQFAVQAGTYTFAWQGNDGETVEKRARFSFTFRRDHPESPTPWTIVEHHSSSMPSAPDGLKRVEN 1559
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1508.3834.1 vs. uniprot
Match: A0A6H5K0Z5_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0Z5_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 2.630e-50
Identity = 92/155 (59.35%), Postives = 110/155 (70.97%), Query Frame = 1 
Query:  229 TADQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENGK------WVMVEHHSSAMPTAPPGLKPAQH*DASGDGI 675
            T DQKAV   T  W+D VT  T+DAPKKTAA+YA DA+ WGTVSE+VR TPE +YDYFDFFAR+PKL ++ Y PAP R++G+FA+ AG YTFAW G DG   E RARF+F +RR  GK      W +VEHHSS+MP AP  LK   H +   DGI
Sbjct:  320 TPDQKAVAETTIVWKDTVTLGTDDAPKKTAALYAPDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLLEYTPAPVRVYGEFAVQAGTYTFAWEGDDGDTVEKRARFSFTFRR--GKPGSPRPWTIVEHHSSSMPDAPAELK---HVEPEDDGI 469
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1508.3834.1 vs. uniprot
Match: D7FN21_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN21_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 4.800e-49
Identity = 83/145 (57.24%), Postives = 106/145 (73.10%), Query Frame = 1 
Query:  229 TADQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENGK----WVMVEHHSSAMPTAPPGLKPAQH 651
            T + KA    T  W+D VT  TEDAPKKT+A+Y +DA+ WGTVSE+VR TPE +YDYFDFFAR+PKL +V Y PAP R++G FA+ AG YTFAW G D    E RARF+F +RR++ +    W +VEHHSS+MP+AP GLK  ++
Sbjct:  290 TPEMKAGSETTIVWKDTVTLGTEDAPKKTSALYPEDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYSPAPARVYGQFAVQAGTYTFAWQGNDDETVEKRARFSFTFRRDHPESPTPWTIVEHHSSSMPSAPAGLKRVEN 434
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1508.3834.1 vs. uniprot
Match: A0A6H5JX02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX02_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 7.310e-49
Identity = 83/142 (58.45%), Postives = 102/142 (71.83%), Query Frame = 1 
Query:  229 TADQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENGK---WVMVEHHSSAMPTAPPGLKPA 645
            T DQKAV A    W+D VT  T+D P+KTA +YA DA  WGTVSE+VR+TPE +Y YFD+FAR+P L +V Y P   R++GDFA+ AG YTF+W   DG   E RARF+F +RR+  K   W +VEHHSS+MPTAP GLKPA
Sbjct:  184 TPDQKAVAATAVVWKDTVTMGTDDTPRKTADLYAQDATLWGTVSEEVRDTPEQIYAYFDYFARLPALRLVEYTPVAVRVYGDFAVQAGTYTFSWQDNDGTTVEKRARFSFTFRRDPSKPQQWAIVEHHSSSMPTAPAGLKPA 325
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1508.3834.1 vs. uniprot
Match: D7FUF9_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF9_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 1.350e-47
Identity = 83/142 (58.45%), Postives = 102/142 (71.83%), Query Frame = 1 
Query:  229 TADQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENGK---WVMVEHHSSAMPTAPPGLKPA 645
            T DQKAV A    W+D VT  T+D P+KTA +YA DA  WGTVSE+VR+TPE +Y YFD+FAR+P L +V Y P   R++GDFA+ AG YTF+W   DG   E RARF+F +RR+  K   W +VEHHSS+MPTAP GLKPA
Sbjct:  329 TPDQKAVAATAVVWKDTVTMGTDDTPRKTADLYAQDATLWGTVSEEVRDTPEQIYAYFDYFARLPALRLVEYTPVAVRVYGDFAVQAGTYTFSWQDNDGDTVEKRARFSFTFRRDPNKPQQWAIVEHHSSSMPTAPAGLKPA 470
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1508.3834.1 vs. uniprot
Match: A0A6H5JSB2_9PHAE (DUF4440 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JSB2_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 7.130e-45
Identity = 80/165 (48.48%), Postives = 106/165 (64.24%), Query Frame = 1 
Query:  154 SATRLAAVKLPVRHMSGQADYAANYTADQKAVDAATRNWRDNVTANTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENGK---WVMVEHHSSAMPTAPPGLK 639
            +AT +    +PV   +G    AA    D+K V+  T  W++ VT  T DAP+KTA +YA D + WGTVSE+VR+TPE +YDYFD+FAR+P L +  + P   R++GDFA  AG YTF W G DG   E RARF+F +R +      W +VEHHSS+MPT+P  LK
Sbjct:   80 AATAMGLTAVPVTRSAG----AAVTEGDRKGVEQTTIRWKEMVTLGTPDAPRKTADLYAVDGVLWGTVSEEVRDTPEEIYDYFDYFARLPNLRLSEFTPVSLRVYGDFATEAGTYTFKWQGEDGVPKEKRARFSFTFRSDPESPTSWTIVEHHSSSMPTSPLQLK 240
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1508.3834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7Z6_9PHAE1.320e-14495.85DUF4440 domain-containing protein n=7 Tax=Ectocarp... [more]
A0A6H5K6U8_9PHAE2.330e-10495.39DUF4440 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JT29_9PHAE8.460e-5363.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUF8_ECTSI5.130e-5261.81Similar to Uncharacterized protein conserved in ba... [more]
A0A6H5LB09_9PHAE2.260e-5060.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K0Z5_9PHAE2.630e-5059.35PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7FN21_ECTSI4.800e-4957.24Similar to Uncharacterized protein conserved in ba... [more]
A0A6H5JX02_9PHAE7.310e-4958.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUF9_ECTSI1.350e-4758.45Similar to Uncharacterized protein conserved in ba... [more]
A0A6H5JSB2_9PHAE7.130e-4548.48DUF4440 domain-containing protein n=2 Tax=Ectocarp... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1508contigEcto-sp13_S_contig1508:4586..7323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score417.2
Seed ortholog evalue4.9e-114
Seed eggNOG ortholog2880.D8LFN9
Model size899
Hectar predicted targeting categorymitochondrion
Exons5
EggNOG free text desc.SnoaL-like domain
EggNOG OGs2S0Y2@2759,COG4875@1
Cds size654
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1508.3834.1prot_Ecto-sp13_S_contig1508.3834.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1508 4831..7323 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462802.7257466-UTR-Ecto-sp13_S_contig1508:4585..48301681462802.7257466-UTR-Ecto-sp13_S_contig1508:4585..4830Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1508 4586..4830 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462802.736178-CDS-Ecto-sp13_S_contig1508:4830..48421681462802.736178-CDS-Ecto-sp13_S_contig1508:4830..4842Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1508 4831..4842 -
1681462802.7448785-CDS-Ecto-sp13_S_contig1508:5330..55701681462802.7448785-CDS-Ecto-sp13_S_contig1508:5330..5570Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1508 5331..5570 -
1681462802.7533793-CDS-Ecto-sp13_S_contig1508:5921..60881681462802.7533793-CDS-Ecto-sp13_S_contig1508:5921..6088Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1508 5922..6088 -
1681462802.7630098-CDS-Ecto-sp13_S_contig1508:6536..65641681462802.7630098-CDS-Ecto-sp13_S_contig1508:6536..6564Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1508 6537..6564 -
1681462802.7724805-CDS-Ecto-sp13_S_contig1508:7116..73231681462802.7724805-CDS-Ecto-sp13_S_contig1508:7116..7323Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1508 7117..7323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1508.3834.1

>prot_Ecto-sp13_S_contig1508.3834.1 ID=prot_Ecto-sp13_S_contig1508.3834.1|Name=mRNA_Ecto-sp13_S_contig1508.3834.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=218bp
MMNFGKMPTGRTASRLARVVSKSESSIQSSVRAAGSMNALLSTRSGLTVT
QSATRLAAVKLPVRHMSGQADYAANYTADQKAVDAATRNWRDNVTANTED
APKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDP
APPRIHGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENGKWVMVEH
HSSAMPTAPPGLKPAQH*
back to top

mRNA from alignment at Ecto-sp13_S_contig1508:4586..7323-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1508.3834.1 ID=mRNA_Ecto-sp13_S_contig1508.3834.1|Name=mRNA_Ecto-sp13_S_contig1508.3834.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2738bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1508:4586..7323- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGAACTTTGGAAAGATGCCCACGGGAAGGACTGCGTCCAGGCTTGC
AAGGGTCGTCAGCAAGAGCGAGTCCAGCATCCAGAGCAGTGTCCGGGCCG
CCGGCTCGATGAACGCTCTGCTGTCGACGAGGTCTGGCCTCACCGTCACA
CAGTCGGCGACCAGGCTTGCCGCCGTGAAGCTCCCGGTCAGGCATATGTC
TGGACAGGTGAGGTGATGTGTCCCAAGTCTGGCGGCGTGTCTGGAAGCCC
TGTATATCTTGATTGATTGTTCTACCTCGTGCGCATGTAGACGTATGCAC
GTTTTTACGATGCGGCATATTTATGAAGGGACCTGTGTTTCGTCGTACAC
GTCCCGCGCGATCCTTGGCTCAATCGGATGGATCATGTCGAGGCTCAGCG
CGTTCGTGAAAGCAACTGGAAGACAAGCACACGCCGAAGTGCCTTGCAAT
GTTTACCAACACCCTTACCGCCACCGTAAAGCTGTAAATGCACCTCTCCA
TTCGCCACACAAACATGCGCAAACATGAACGTAAGACTCTTTTGGAAGCG
TGTCTCTTCGCGGGCCTCTTTGCGTCAATTTTTTTTTATGATTTTTGGGT
CGTGTGTTGTCGCTCTGCTTAGCAGTGCGATCTAGCCGTGCGAGTGCGAC
AAACGGTTAAATTATCCTCTGCCCAACCCACTCGCCCTGTTTCCTTGAAC
GTTGTGAAACGTTGTGCCCGACGCGCTCGCATCACCGGACTTGACGCGGA
CCTGTTCAGGCCGACTATGCGGCCAACTACACCGCTGGTGAGTCCACCGG
AACCCTTCGTTACTGCCTCATTTGCTTTTGCATGCTGGTGCTGGTGCAGG
TGCTGTAAAGATGGCGTGTTTTCGCCGCAGGCGTCGTTTGCTGCTTTATG
TCCGCTGGCTGATGTTATTGTTGTTGCTTCCTGATGTTCTTATTTCCATT
CGGCAACTCCGTTCTGCCGAAGCAAGTCGCTTCGACCATTATTGCTTGGC
GACATGGCGGTAAAGCTTGTGTCCTTTCTTGCCGCATATAGTGAAACAAT
TTCTTATGGCCCCGATTGTCTTCTTTCGTGTAGGGTGATTTGATATGAAC
GTTCGTGTCAATGGTCTCCATATCTCTGCCCCTGTACTATTTTGTCGTGT
CTAGGGTGATCGGAGTTGAACGTTAGTCTCACATGCGCCTGTACCTCTAC
ACTTTGTTGTTGTTGGTCGTGTCACGGGTGAACAGACCAGAAGGCCGTCG
ACGCCGCGACCAGGAACTGGAGGGATAACGTGACCGCCAACACCGAGGAC
GCTCCCAAGAAGACCGCCGCCATCTACGCTGACGACGCGCTGTTCTGGGG
AACGGTGTCGGAGCAGGTCCGCAACACGCCCGAGCACGTCTACGACTACT
TTGTGAGTGTTATGTGGTTGAAGAATTTATTCTCGTCTGCATCGGCCCCA
GTAGCAACAACCATCGCGTGTGGATGTGCCTGTTGCGTTGTCTGTATTTG
CGCTCGAATTTAGCATGGTGGTGTCGATTGTTTTATTTGGCCCGGTGATG
TTTCTTTCAACATTTTGTTGTTTACCGTCGGGCATGATAATTTTTGGTCA
CTGGACCGATCGCTGCTGGCACAAGGCCATCAATCTCATCTTGATGCCCG
GTTCCCAACACCCAACCAAAATTTTCAAGCTCAAAATACCTGGACAACAT
TGGGGACCGTAGCCTTGACTACCCACCTCTGGCCATTCTTTCCCTCTACA
CAGGACTTCTTTGCCCGCATGCCCAAGCTCTCCATGGTGGCGTACGACCC
GGCGCCCCCGCGCATCCACGGGGACTTCGCCATCCACGCGGGCGCCTATA
CGTTCGCGTGGGCAGGAGCTGACGGGGCCATGACCGAGACTCGGGCGCGC
TTCACGTTTGCCTACCGAAGGGAGAACGGCAAGTGGGTAATGGTCGAGCA
CCACTCGTCCGCGATGCCCACGGCGCCCCCGGGGCTCAAGCCGGTGAGTA
TTTGCAGGGGCCCGTACATAGTCGATGAGTTTTTTTTTTAATAGTACTAC
TGTTTTCTCTTCGTTTTCTCCATGTGTATTTCGCGAGAGAAAGGGGTTCG
GTCCCGCCGTCTTGGCTTGGTTTTCTTGTTTTCTGTATGTAGAAGTGCGC
CTCTTCCCGATAGGAAATTTAGTATGGGTTTTGTTGCGTTGAGATAAGCA
ACCTGTTGTCGACATTTCCCCGAGCAGCATTCAGCGATTCTTATGCTCTT
GTATTCATACTTTTTTTCTCAATATTCTCAACGAATCCATCTCTGTCGTT
GTCGTTTTCTTGTCACTAGTGTTTTGTTCTATTTTGTATTCGTGATGGTT
CCAACGCCGCCCTGTACGGTCTTTTGTTCGTCACCACGCCGTTCAGTGAG
TCCTCTCCCTCGCGCCCAGCTGCAATCATCCACCCTAACCTTACTGTTCC
CGACCGCGATGCCGCTCCCGCTATCGCGCAGGCCCAGCACTAAGATGCAT
CCGGAGATGGAATACGCAGACAGATGTGAGGTTCCTGTGAAGGCGTGGAT
ACGCTACTCTCTTTTGAATCACCTCGCTTTATATTTTTCGTTCACGTTCC
GTTCCGCGTTTTTGCCTTCGGTTTGTGTGCGCTTGCTTCCGTTGTCCGCC
GCGGTCGGTGCCTTGGGTTTACAGATCGTAGCACCCGCGCGAAAGAAGTT
GGAAAATATTGTGGAGAAATTTGAAACGATACAGCGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1508:4586..7323-

>mRNA_Ecto-sp13_S_contig1508.3834.1 ID=mRNA_Ecto-sp13_S_contig1508.3834.1|Name=mRNA_Ecto-sp13_S_contig1508.3834.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=654bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1508:4586..7323- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGAACTTTGGAAAGATGCCCACGGGAAGGACTGCGTCCAGGCTTGC
AAGGGTCGTCAGCAAGAGCGAGTCCAGCATCCAGAGCAGTGTCCGGGCCG
CCGGCTCGATGAACGCTCTGCTGTCGACGAGGTCTGGCCTCACCGTCACA
CAGTCGGCGACCAGGCTTGCCGCCGTGAAGCTCCCGGTCAGGCATATGTC
TGGACAGGCCGACTATGCGGCCAACTACACCGCTGACCAGAAGGCCGTCG
ACGCCGCGACCAGGAACTGGAGGGATAACGTGACCGCCAACACCGAGGAC
GCTCCCAAGAAGACCGCCGCCATCTACGCTGACGACGCGCTGTTCTGGGG
AACGGTGTCGGAGCAGGTCCGCAACACGCCCGAGCACGTCTACGACTACT
TTGACTTCTTTGCCCGCATGCCCAAGCTCTCCATGGTGGCGTACGACCCG
GCGCCCCCGCGCATCCACGGGGACTTCGCCATCCACGCGGGCGCCTATAC
GTTCGCGTGGGCAGGAGCTGACGGGGCCATGACCGAGACTCGGGCGCGCT
TCACGTTTGCCTACCGAAGGGAGAACGGCAAGTGGGTAATGGTCGAGCAC
CACTCGTCCGCGATGCCCACGGCGCCCCCGGGGCTCAAGCCGGCCCAGCA
CTAA
back to top