mRNA_Ecto-sp13_S_contig1507.3827.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1507.3827.1
Unique NamemRNA_Ecto-sp13_S_contig1507.3827.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1507.3827.1 vs. uniprot
Match: D7FMV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV0_ECTSI)

HSP 1 Score: 409 bits (1050), Expect = 4.870e-137
Identity = 297/316 (93.99%), Postives = 300/316 (94.94%), Query Frame = 1 
Query:    1 MTDDHVRRRGGGSGRLALSCTALRAKEGAEPSVSKALGLLCLLTASIVPSAGQQMDPAQMQRQIQQXXXXXXXXXXXXXXXNRIAQMLSAVGAGGASAARCAREHPRAAVAATAGAATALWVGKETRRSGVLVCSSPRISLFRPSDAYLSWVLESAAEAPVASPLRGVILSPLQDPQGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA------GGAAEIRAALGIMKSGAGQGTYMHETTHGKGVKSVCAGVRVGKGLGIYHKFSQGLGKLDVFDGRSDCELMAAESSSEDVVST 930
            MTDDHVRR GGGSGRLALSCTALRA EGA PSVSKALGLLCLL ASIVPS GQQMDPAQMQRQIQQXXXXXXXXXXXXXXXNRIAQMLSAVGAGGASAARCAREHPRAAVAATAGAATALWVGKETRRSG+LVCSSPRISLFRPSDAYLS VLE+AAEAPVASPLRGVILSPLQDPQGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       GGAAEIRA LGIMKSGAGQGTYMHE THGKGVKSVCAGVRVGKGLGIYHKF+QGLGKLDVFDGRSDCELMAAESSSEDV ST
Sbjct:    1 MTDDHVRRHGGGSGRLALSCTALRANEGAGPSVSKALGLLCLLAASIVPSVGQQMDPAQMQRQIQQXXXXXXXXXXXXXXXNRIAQMLSAVGAGGASAARCAREHPRAAVAATAGAATALWVGKETRRSGLLVCSSPRISLFRPSDAYLSRVLEAAAEAPVASPLRGVILSPLQDPQGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAAEIRATLGIMKSGAGQGTYMHEATHGKGVKSVCAGVRVGKGLGIYHKFAQGLGKLDVFDGRSDCELMAAESSSEDVGST 316
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BLAST of mRNA_Ecto-sp13_S_contig1507.3827.1 vs. uniprot
Match: A0A6H5KVX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX2_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 1.540e-83
Identity = 165/180 (91.67%), Postives = 167/180 (92.78%), Query Frame = 1 
Query:    1 MTDDHVRRRGGGSGRLALSCTALRAKEGAEPSVSKALGLLCLLTASIVPSAGQQMDPAQMQRQIQQXXXXXXXXXXXXXXXNRIAQMLSAVGAGGASAARCAREHPRAAVAATAGAATALWVGKETRRSGVLVCSSPRISLFRPSDAYLSWVLESAAEAPVASPLRGVILSPLQDPQGEE 540
            MTD HV+RR GG GRLALSC  LRAK+GA P VSKALGLLCLL ASIVPSAGQQMDPAQMQRQIQQXXXXXXXXXXXXXXXNRI  MLSAVGAGGASAA  AR HPRAAVAATAGAATALWVGKETRRSGVLVCSSPRISLFRPSDAYLSWVLESAAEAPVASPLRGVILSPLQDPQGEE
Sbjct:    1 MTDVHVQRRCGGGGRLALSCAVLRAKDGAGPGVSKALGLLCLLAASIVPSAGQQMDPAQMQRQIQQXXXXXXXXXXXXXXXNRITHMLSAVGAGGASAAHYARAHPRAAVAATAGAATALWVGKETRRSGVLVCSSPRISLFRPSDAYLSWVLESAAEAPVASPLRGVILSPLQDPQGEE 180
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1507.3827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMV0_ECTSI4.870e-13793.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVX2_9PHAE1.540e-8391.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1507contigEcto-sp13_S_contig1507:133..3923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size930
Hectar predicted targeting categoryother localisation
Exons6
Cds size930
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1507.3827.1prot_Ecto-sp13_S_contig1507.3827.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1507 133..3923 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462802.2355306-CDS-Ecto-sp13_S_contig1507:132..2181681462802.2355306-CDS-Ecto-sp13_S_contig1507:132..218Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1507 133..218 -
1681462802.2482855-CDS-Ecto-sp13_S_contig1507:502..6871681462802.2482855-CDS-Ecto-sp13_S_contig1507:502..687Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1507 503..687 -
1681462802.2735653-CDS-Ecto-sp13_S_contig1507:1205..12691681462802.2735653-CDS-Ecto-sp13_S_contig1507:1205..1269Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1507 1206..1269 -
1681462802.2820315-CDS-Ecto-sp13_S_contig1507:2034..22001681462802.2820315-CDS-Ecto-sp13_S_contig1507:2034..2200Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1507 2035..2200 -
1681462802.2905233-CDS-Ecto-sp13_S_contig1507:3015..31911681462802.2905233-CDS-Ecto-sp13_S_contig1507:3015..3191Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1507 3016..3191 -
1681462802.3001554-CDS-Ecto-sp13_S_contig1507:3670..39231681462802.3001554-CDS-Ecto-sp13_S_contig1507:3670..3923Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1507 3671..3923 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1507.3827.1

>prot_Ecto-sp13_S_contig1507.3827.1 ID=prot_Ecto-sp13_S_contig1507.3827.1|Name=mRNA_Ecto-sp13_S_contig1507.3827.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=310bp
MTDDHVRRRGGGSGRLALSCTALRAKEGAEPSVSKALGLLCLLTASIVPS
AGQQMDPAQMQRQIQQQMGGSPGGGGGAPPPNRIAQMLSAVGAGGASAAR
CAREHPRAAVAATAGAATALWVGKETRRSGVLVCSSPRISLFRPSDAYLS
WVLESAAEAPVASPLRGVILSPLQDPQGEEEQEEGQRDSSASSPSADGGS
RKRRSSGRRRVGCSSSSSNRLRDGEEEAGGAAEIRAALGIMKSGAGQGTY
MHETTHGKGVKSVCAGVRVGKGLGIYHKFSQGLGKLDVFDGRSDCELMAA
ESSSEDVVST
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mRNA from alignment at Ecto-sp13_S_contig1507:133..3923-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1507.3827.1 ID=mRNA_Ecto-sp13_S_contig1507.3827.1|Name=mRNA_Ecto-sp13_S_contig1507.3827.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3791bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1507:133..3923- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGATGACCATGTACGGCGGCGTGGTGGTGGTAGTGGCCGCCTCGC
GTTATCATGCACCGCTCTTCGCGCGAAGGAAGGGGCCGAGCCTAGCGTGT
CGAAAGCGCTGGGTCTCTTGTGTCTCCTGACGGCATCGATCGTGCCCTCG
GCCGGCCAGCAAATGGACCCCGCGCAGATGCAACGCCAGATCCAGCAGCA
AATGGGGGGCTCCCCGGGTGGCGGAGGCGGCGCCCCACCGCCGAACAGAA
TAGGTGAGAGACAACGGAGAGGAGCACGCCACATGAGGGCGGGTATTCCA
CACACGTGTCCGTGCGTAATATGTTGGGTCACGGTCGATACCCTGGTGTG
CGTTCTTGCAGACTCTGGTGAAATGCAGGCAAAGTCGATCAATCCTGAAG
TGATGTTTTTGGGTGGATTGGTGAAGTTCCTTGTTTGGGTGCAATATTCC
GCCTCGCGACCGCAGATGTTTCGTTTTCCCATGTATGAAAAGACCGCATT
GTAACAAAGGAAGTCATGTTTCTTCGCGGGCACAATGTTTCGCCGCTATT
CTCGCCGCCCAACCCTCCCAACCTTCTTCTATTCCTCATGATCCGCAGCC
AGTGCCCACATCTCTCTGAAGGTTGGTGATGTCCCCCATGATCCCCCCCC
CGCCGCCTACTCACCGTTGCCCCGCCACCATCCCTTTCCCTACCCATCGT
GAATGATGAAAACGTGTTGCTTGTTGTTGTAGCTCAGATGCTGTCCGCCG
TCGGGGCCGGCGGTGCTTCCGCCGCTCGCTGTGCCCGGGAACACCCGCGA
GCAGCGGTGGCGGCGACGGCGGGCGCGGCGACTGCGTTGTGGGTGGGCAA
GGAGACGAGAAGATCGGGGGTGCTTGTGTGCAGCAGCCCCCGCATCAGCT
TGTTTCGGGTGCGTTTGTGTCATGTGTGCAGCAGGTGAAAGTGCGCATGC
ACCCCCTCAGCGATGCTCCTTGTGTAAACTTCGTGTGAACCAAGCGAGTT
TCGTTTCAAGAAGGCCATGGGACTGATCATGTACAGCGTCGCCCTCGGAT
CAGTCTGTTCGTGCGTGTGCACAGTCTTGATTGAGTGCGTGCGTAGCAGC
AGCGGAGGGCGCGTGACAGACCAGGGGTAAGTTGTTTGCAGCAAAGCAAG
TGTCGTTGGCAGAACTTTAAAAGCCGACGCCACGAGAGGCGATCGCCCCC
ACCCTGGGAAGGGATCTTTGACTTCGTGAAAGGTGATGCAACAAACATTC
GCCCTACACGTGCTGCTACCATGATTTGATCGCTAGAGCGATGGACGACA
TTCAGCAGCTCAAGCTTGTCTTGACACAGAGACAACAGAGGGCCTGTCCC
CAGGGAGTGCCGGTTGAGCCACGCCCCTTGCCATCGGGCAGTTGTGGCAC
TGAAACATGTTGGCACGGGCGGAAAAATAAGAAAGGAGCGGTGAACAAGG
GATAGATAGTGTCGCGTGCCCTCAGTGGTGCCGTTAACCCCCAGCAGCAG
CGAGTGCAGTCGACAGTGGCGGTTCATCTCCACTTTGGCGCACGTATGCA
TGGGACAACGCGAAGGGAATAGTAGCCCCCTTGCCCTGTTGCTGCCGCTG
CCGTTGCACCTCTCGGGGCAACATCAACAACAAAGTACAGCATCGTGCTT
CGAACAACAAGTCGCTCCAAAACTCGAAGCTGATCTCTACCTTCAACTTC
AACTTCAACTTCAACTTTTACAGCCGTCGGATGCCTACCTCTCCTGGGTG
CTGGAATCGGCCGCCGAAGCTCCCGTAGCCTCTCCTCTCCGCGGCGTGAT
CCTGTCGCCACTGCAAGACCCTCAGGGGGAAGAGGAGCAGGAGGAAGGGC
AACGGGATAGTAGTGCTAGTAGCCCGTCTGCCGACGGAGGTGGGTGGTGG
GTTGTTGTTGCTGTTGTTCCTGTTGTTGCCGCGGTCGTCGTCGTCGATGC
CGGCGCGTTGTCCGCTACAACGTGTCGTCAGCCGTGCTCGATGATTGGTT
GACTTCTCCGAGGGCGTGTTCGTGGTCGGGCGTTTGTTGATATGACTTCA
TCCTGCTTTCTGGTTCGGGGTTTCGTAGCCTTGTGTGCGTGTGCGTGTTC
TCTTGACCTCGCTTTTCGGCAGTCCAGTGAATAGGCATCAGTTTTGTGTG
TGCCCGTGTCTTTTTTGCATGTTTTCGGCAAGCGCCAAGTGCCCGCGGCG
GATGACGGCTGGACAGTTTTTTGGCGACTCACACCAATTTTTTGACCGAA
GCAAACTCCACATCTCACCACCGTGGAGTTGGTAGACGTACGAGCCAAAG
CCGAACAAGTTGACGACGGGCGCGAGACGGGCACTCATGGGCGGCAGTGT
GTGCAAGAGAAGGACGTGTGGCTCTGCGGCATGCAGGAGGCACGATGCTC
TTGGCAGACACTCCACGTCGGCTGGAGTGGCGCGACAGCAAGAGCTCGCC
GATGAAAGTAATTTGGCGTTCAGGTTTCGCGTCCCTCTTGCCGCTGCTGG
CCACGCCGCCCTTTCACCGTGCTCGTTACCGCCGTGAACGTATTTACACC
AACTGCAATTGTGCCCGCCCCGTCCGCGTATCTGTTTGTCTGTCTATCTT
GTCTGCTGCACTGGTGTGTTTTCTTGTTCTTGTGTACATTTCTCTTGGCT
CTAGGGTCTAGGAAGAGACGGAGCTCGGGGAGAAGGCGTGTAGGGTGCAG
CAGCAGCAGCAGCAACAGGTACGGTGCCCTTTTTCTCCCCCCCTGTAGCG
GAAACAGCACCTGCACCCGCCCCGCCAGCACCACCATGATCTGAGGGAAG
CTTGATTTGTTCATCCCGTGTGCTTTCTTCTCCCGCCGGTTTCGAGTGGG
GCTTTAATTTCGTGCCCCCGTTTTGTTCGCTGTGTGGGGTGCGTCTGTTT
TGTACAAGGGGGCAAAGATCGAAGTCCCTTGCGGTAGTCGGCCTGCCGAA
TGTGGAACGTTCGGTTAGCCCGGACGCTTAATCAACCCACCACATGTCTG
GTTTGGCACAGCAAACACAAATGAAAGGTAGGCTGGGGCGGCGGTGACCC
GGCGTTTCGCTCCTCCGTCCCAACGTTGTAGGGATGCGAAGTCAGTGGTC
TTGCGTCTACGGCATGCGTTTTGATGAGTACGAGCTGTTGCACGCACGGC
ATATCCAGCTGACTTGTAGCATAGTAGTGAATATGCTGTACATCTAACGT
GGGTGCACGCCCCCCCTGCATGGCGGGAACGGCAAGGCTGCGCGATGGAG
AGGAGGAAGCCGGGGGCGCAGCCGAGATTCGCGCAGCCCTCGGCATAATG
AAGAGTGGGGCGGGACAGGGGACGTACATGCACGAGACGACGCACGGGAA
GGGGGTGAAGTCGGTGTGCGCCGGTGTGCGCGTGGGGAAGGGTCTCGGCA
TATACCACAAGTTCTCGCAAGGTGATGGGAAGAGAGGGAGATAGGGACAG
AGACAAAGATGAGATCTTATCGGTCTGGACGGGTCTTGGAAGACCACAAC
CACATCGGAACGTGGTCGACGTGTGTGCATGAATAACCCGAACGGGGCAT
GTACTTCAAACAACCTCCGCAGATAACAACTCAAGCGATGACTATGGAAA
CACTGCCGTCTGTACCCTGCTTGCACTTTGTGTGTGAATGTGTAGTGATT
GATGTGCTCCCTTCTTTGTGCGCGTCTGCTCGTGTTTTTTTTTGGGGGGC
GGAAGGTCTGGGGAAGCTCGACGTCTTCGACGGGCGGAGCGATTGCGAGC
TGATGGCGGCCGAGTCTTCTTCGGAAGATGTGGTGAGCACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1507:133..3923-

>mRNA_Ecto-sp13_S_contig1507.3827.1 ID=mRNA_Ecto-sp13_S_contig1507.3827.1|Name=mRNA_Ecto-sp13_S_contig1507.3827.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=930bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1507:133..3923- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGATGACCATGTACGGCGGCGTGGTGGTGGTAGTGGCCGCCTCGC
GTTATCATGCACCGCTCTTCGCGCGAAGGAAGGGGCCGAGCCTAGCGTGT
CGAAAGCGCTGGGTCTCTTGTGTCTCCTGACGGCATCGATCGTGCCCTCG
GCCGGCCAGCAAATGGACCCCGCGCAGATGCAACGCCAGATCCAGCAGCA
AATGGGGGGCTCCCCGGGTGGCGGAGGCGGCGCCCCACCGCCGAACAGAA
TAGCTCAGATGCTGTCCGCCGTCGGGGCCGGCGGTGCTTCCGCCGCTCGC
TGTGCCCGGGAACACCCGCGAGCAGCGGTGGCGGCGACGGCGGGCGCGGC
GACTGCGTTGTGGGTGGGCAAGGAGACGAGAAGATCGGGGGTGCTTGTGT
GCAGCAGCCCCCGCATCAGCTTGTTTCGGCCGTCGGATGCCTACCTCTCC
TGGGTGCTGGAATCGGCCGCCGAAGCTCCCGTAGCCTCTCCTCTCCGCGG
CGTGATCCTGTCGCCACTGCAAGACCCTCAGGGGGAAGAGGAGCAGGAGG
AAGGGCAACGGGATAGTAGTGCTAGTAGCCCGTCTGCCGACGGAGGGTCT
AGGAAGAGACGGAGCTCGGGGAGAAGGCGTGTAGGGTGCAGCAGCAGCAG
CAGCAACAGGCTGCGCGATGGAGAGGAGGAAGCCGGGGGCGCAGCCGAGA
TTCGCGCAGCCCTCGGCATAATGAAGAGTGGGGCGGGACAGGGGACGTAC
ATGCACGAGACGACGCACGGGAAGGGGGTGAAGTCGGTGTGCGCCGGTGT
GCGCGTGGGGAAGGGTCTCGGCATATACCACAAGTTCTCGCAAGGTCTGG
GGAAGCTCGACGTCTTCGACGGGCGGAGCGATTGCGAGCTGATGGCGGCC
GAGTCTTCTTCGGAAGATGTGGTGAGCACG
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