mRNA_Ecto-sp13_S_contig15063.3824.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15063.3824.1
Unique NamemRNA_Ecto-sp13_S_contig15063.3824.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15063.3824.1 vs. uniprot
Match: A0A6H5K2C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2C3_9PHAE)

HSP 1 Score: 288 bits (737), Expect = 1.170e-87
Identity = 151/165 (91.52%), Postives = 158/165 (95.76%), Query Frame = 1
Query:    1 DATDENGDEEERREEKAKAEKAFTEVDSAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTAGRLEKQSFLAWYMDWLFGEEESSDDEWGEGDESSPNAVGRAPKDAGFAALVKSQAGGWKCAACLVSNAEAAVKCASCETVRPGREGKVAASGVLGGAGIL 495
            DAT E+GDEEERREEKAKAEKAFTEVDSAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTAGRLE+Q+FLAWYMDWLFGEEESS DEWGEGDESSPNAVGRAPKDAGFAALV+ QAGGWKCAACLVSNA+A +KCASCE VRPG+E KV ASGVLGGAGIL
Sbjct:  656 DATGESGDEEERREEKAKAEKAFTEVDSAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTAGRLERQAFLAWYMDWLFGEEESSHDEWGEGDESSPNAVGRAPKDAGFAALVRHQAGGWKCAACLVSNAKAVLKCASCEAVRPGQEDKVVASGVLGGAGIL 820          
BLAST of mRNA_Ecto-sp13_S_contig15063.3824.1 vs. uniprot
Match: D8LRY5_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY5_ECTSI)

HSP 1 Score: 285 bits (728), Expect = 1.050e-85
Identity = 148/157 (94.27%), Postives = 153/157 (97.45%), Query Frame = 1
Query:   46 KAKAEKAFTEVDSAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTAGRLEKQSFLAWYMDWLFGEEESSDDEWGEGDESSPNAVGRAPKDAGFAALVKSQAGGWKCAACLVSNAEAAVKCASCETVRPGREGKVAASGVLGGAGILXXXSGAS 516
            +AKAEKAFTEVDSAAKGWVEE QFEALMEAVGTTYAVEDHKPKLLAICT GRLE+QSFLAWYMDWLFG+EESSDDEWGEGDESSPNAVGRAPKDAGFA+LVKSQAGGWKCAACLVSNAEAA+KCASCETVRPGREGKVAASGVLGGAGIL X SGAS
Sbjct: 2234 RAKAEKAFTEVDSAAKGWVEEGQFEALMEAVGTTYAVEDHKPKLLAICTDGRLERQSFLAWYMDWLFGDEESSDDEWGEGDESSPNAVGRAPKDAGFASLVKSQAGGWKCAACLVSNAEAALKCASCETVRPGREGKVAASGVLGGAGILGXSSGAS 2390          
BLAST of mRNA_Ecto-sp13_S_contig15063.3824.1 vs. uniprot
Match: A0A6H5JYN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYN5_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 3.530e-56
Identity = 96/114 (84.21%), Postives = 100/114 (87.72%), Query Frame = -2
Query:  150 MPAPPNTPDAATLPSRPGLTVSHDAHFTAASALDTKHAAHFQPPAWLFTKAANPASFGARPTALGLLSSPSPHSSSDDSSSPNNQSMYHAKNDCFSNRPAVQIASSFGLWSSTA 491
            MPAPPNTPDA TL S PGLT SHDAHF  A A DTKHAAHFQPPAWL ++ ANPASFGARPTA GLLSSPSPHSS DDSSSPN+QSMYHAKN C SNRPAVQIA+SFGLWSSTA
Sbjct:    1 MPAPPNTPDATTLSSCPGLTASHDAHFNTALAFDTKHAAHFQPPAWLISRDANPASFGARPTASGLLSSPSPHSSCDDSSSPNSQSMYHAKNACLSNRPAVQIANSFGLWSSTA 114          
BLAST of mRNA_Ecto-sp13_S_contig15063.3824.1 vs. uniprot
Match: A0A7S4E7X3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7X3_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 8.110e-21
Identity = 60/147 (40.82%), Postives = 87/147 (59.18%), Query Frame = 1
Query:    1 DATDENGDEEERREEKAKAEKAFTEVDSAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTAGRLEKQSFLAWYMDWLFGEEESSDDEWGEGDESSPNAVGRAPKDAGFAALVKSQAGGWKCAACLVSNAEAAVKCASCETVRP 441
            DA+D++GDEEER EE+  A +AF  V +  K  V  S+F+ALMEA+GTTY  E+H+  L  +   G + + +F+ WY+DW+ G+ +S            P A  +A   A +A+L  ++ G WKC  C V N + A KCA+CET  P
Sbjct:  115 DASDDSGDEEEREEERGNAREAFDTV-ADGKTEVPSSKFQALMEALGTTYCEEEHRRTLRKLAPGGTVARDAFVEWYVDWVLGDGDSDXXXXXXXXXXXPAAESKAA--ATWASLTAAKEGSWKCEVCDVRNDKDASKCAACETPNP 258          
BLAST of mRNA_Ecto-sp13_S_contig15063.3824.1 vs. uniprot
Match: A0A8J2SJ63_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJ63_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.090e-20
Identity = 60/147 (40.82%), Postives = 87/147 (59.18%), Query Frame = 1
Query:    1 DATDENGDEEERREEKAKAEKAFTEVDSAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTAGRLEKQSFLAWYMDWLFGEEESSDDEWGEGDESSPNAVGRAPKDAGFAALVKSQAGGWKCAACLVSNAEAAVKCASCETVRP 441
            DA+D++GDEEER EE+  A +AF  V +  K  V  S+F+ALMEA+GTTY  E+H+  L  +   G + + +F+ WY+DW+ G+ +S            P A  +A   A +A+L  ++ G WKC  C V N + A KCA+CET  P
Sbjct:  955 DASDDSGDEEEREEERGNAREAFDTV-ADGKTEVPSSKFQALMEALGTTYCEEEHRRTLRKLAPGGTVARDAFVEWYVDWVLGDGDSDXXXXXXXXXXXPAAESKAA--ATWASLTAAKEGSWKCEVCDVRNDKDASKCAACETPNP 1098          
BLAST of mRNA_Ecto-sp13_S_contig15063.3824.1 vs. uniprot
Match: A0A7S4HSE8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HSE8_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.860e-17
Identity = 62/172 (36.05%), Postives = 90/172 (52.33%), Query Frame = 1
Query:   25 EEERREEKAKAEKAFTEVDSAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTA-GRLEKQSFLAWYMDWLFGEEESSDDEWGEGDESSPNA---VGRAPKDAGFAALVKS---QAGGWKCAACLVSNAEAAVKCASCETVRPGRE---------GKVAASGVLGGAGI 492
            EEE+ EE+ KA +AF  + S  +  + +  F  L+E +GTTY  E+H+  L  +    G++ K  F+ WY+DWLFG+E+  ++   + DE  P      G    + G+    KS   + G WKC  C+V N    VKCA+CE VRPG E         G  AA+G +G  G 
Sbjct:  756 EEEKAEEREKALEAFASMSSDGEA-IPKEDFPKLIEGMGTTYCEEEHRRTLRKLAGPDGKVRKDEFVEWYLDWLFGDEDEDEEYSDKEDEEEPGEGTREGSVASNKGWGDAFKSTEGKEGSWKCDVCMVRNDPDLVKCAACEMVRPGHEEEANAKEGGGAGAAAGAIGAGGF 926          
BLAST of mRNA_Ecto-sp13_S_contig15063.3824.1 vs. uniprot
Match: A0A7R9W639_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W639_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.770e-17
Identity = 61/163 (37.42%), Postives = 91/163 (55.83%), Query Frame = 1
Query:   31 ERREEKAKAEKAFTEVDSAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTAGRLEKQSFLAWYMDWLFGEEESSDDEWGEGDESSPNA--VGRAPKDAGFAALVKSQA---GGWKCAACLVSNAEAAVKCASCETVRPGREGKVAA---SGVLGGAGIL 495
            E+ +E+ +A + F+ + S     + + +F  L+EA+GTTY  E+H+  +  I   G++ + +F+ WY+DWLFGE E  DDE+ E       A    +A K  G+    KS     G WKC  CLV N   ++KCA+CE V+PG E +VAA   SG    AG +
Sbjct:  121 EQADERNRAHEVFSSLSSDGDS-IPKEKFVDLIEAMGTTYCEEEHRRTIKKIAVEGKVHRDAFVEWYVDWLFGEGEE-DDEYSEXXXXXXXARDASKAAKQ-GWGDTFKSMGTKPGSWKCEFCLVQNDPDSIKCAACEAVKPGCEEEVAAKESSGAAASAGAI 280          
BLAST of mRNA_Ecto-sp13_S_contig15063.3824.1 vs. uniprot
Match: A0A7S3ZVY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZVY8_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 6.950e-17
Identity = 54/139 (38.85%), Postives = 76/139 (54.68%), Query Frame = 1
Query:   55 AEKAFTEVDSAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTAGRLEKQSFLAWYMDWLFGEEESSDDEWGEGDESSPNAVGRAPKDAGFAALVKSQAGGWKCAACLVSNAEAAVKCASCETVRPGREGKVAASG 471
            A +AF  V   A   V  S+F+ALMEA+GTTY  E+H+  L  +   G + + +F+ WY+DW+ G+ +S            P A  +A   A +A+L  ++ G WKC  C V N + A KCA+CET  P    K AASG
Sbjct:  131 AREAFDTVADGATS-VPSSKFQALMEALGTTYCEEEHRRTLRKLAPGGTVARDAFVEWYVDWVLGDGDSDXXXXXXXXXXXPAAESKAA--ATWASLTAAKEGSWKCEVCDVRNDKDASKCAACETPNPAAPQKAAASG 266          
BLAST of mRNA_Ecto-sp13_S_contig15063.3824.1 vs. uniprot
Match: A0A1Z5KBE2_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBE2_FISSO)

HSP 1 Score: 81.3 bits (199), Expect = 1.170e-14
Identity = 51/143 (35.66%), Postives = 82/143 (57.34%), Query Frame = 1
Query:   37 REEKAKAEKAFTEVDSAAKGW--VEESQFEALMEAVGTTYAVEDHKPKLLAIC-TAGRLEKQSFLAWYMDWLFGEEES----SDDEWGEGDESSPNAVGRAPKDAGFAALVKSQAGGWKCAACLVSNAEAAVKCASCETVRPG 444
            REE+ +A+  F E+ S   G   + E  F  L+E++GTTY  E+H+  +  +  ++G + + +F++WY+DWLFG +ES    S++E  E D    N +       G+  + K++ G WKC+ C+V N     KC +CE VRPG
Sbjct:  770 REERERAQAKFQELSSIRNGVRSISEMDFPKLIESLGTTYCEEEHRRTIRKLKDSSGIITENAFVSWYIDWLFGGDESDVEDSEEEEDEVDGVVTNEL--VATGTGWGNIFKAEEGSWKCSVCMVLNPGETGKCKACEAVRPG 910          
BLAST of mRNA_Ecto-sp13_S_contig15063.3824.1 vs. uniprot
Match: A0A3M6VIP6_9STRA (RanBP2-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VIP6_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.080e-13
Identity = 45/133 (33.83%), Postives = 76/133 (57.14%), Query Frame = 1
Query:   52 KAEKAFTEVDSAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTAGRLEKQSFLAWYMDWLFGEEESSDDEWGEGDESSPN--AVGRAPKDAGFAAL-VKSQAGGWKCAACLVSNAEAAVKCASCETVRP 441
            KA   F  + S    ++   QF  L++A+G+TYA E+H   L  +   G++ +  F++WY+DW+FG+++S  D+  +   SS    A  ++ +D   A L + ++ G WKC  C+VSN   A+KC++CE   P
Sbjct:  486 KARITFRTIVSDGSDFILSEQFPKLIKAMGSTYAEEEHAKTLENLEKDGKVYEADFVSWYVDWIFGDDDSDSDDNADTPASSATEPAEMKSKEDIAAAFLRLSAKEGSWKCGVCMVSNNPEAIKCSACEAPNP 618          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15063.3824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2C3_9PHAE1.170e-8791.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRY5_ECTSI1.050e-8594.27N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5JYN5_9PHAE3.530e-5684.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4E7X3_9STRA8.110e-2140.82Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A8J2SJ63_9STRA4.090e-2040.82Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S4HSE8_9STRA1.860e-1736.05Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
A0A7R9W639_9STRA4.770e-1737.42Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S3ZVY8_9STRA6.950e-1738.85Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A1Z5KBE2_FISSO1.170e-1435.66Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A3M6VIP6_9STRA1.080e-1333.83RanBP2-type domain-containing protein n=1 Tax=Pero... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15063contigEcto-sp13_S_contig15063:3371..3904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score284.3
Seed ortholog evalue4e-74
Seed eggNOG ortholog2880.D8LRY5
Model size534
KEGG koko:K09566
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0865@2759
EC5.2.1.8
Cds size534
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03041,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462802.0649958-CDS-Ecto-sp13_S_contig15063:3370..39041681462802.0649958-CDS-Ecto-sp13_S_contig15063:3370..3904Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15063 3371..3904 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15063.3824.1prot_Ecto-sp13_S_contig15063.3824.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15063 3371..3904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15063.3824.1

>prot_Ecto-sp13_S_contig15063.3824.1 ID=prot_Ecto-sp13_S_contig15063.3824.1|Name=mRNA_Ecto-sp13_S_contig15063.3824.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=178bp
DATDENGDEEERREEKAKAEKAFTEVDSAAKGWVEESQFEALMEAVGTTY
AVEDHKPKLLAICTAGRLEKQSFLAWYMDWLFGEEESSDDEWGEGDESSP
NAVGRAPKDAGFAALVKSQAGGWKCAACLVSNAEAAVKCASCETVRPGRE
GKVAASGVLGGAGILGGSSGASGGGGGF
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mRNA from alignment at Ecto-sp13_S_contig15063:3371..3904-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15063.3824.1 ID=mRNA_Ecto-sp13_S_contig15063.3824.1|Name=mRNA_Ecto-sp13_S_contig15063.3824.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=534bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15063:3371..3904- (Ectocarpus species13 EcNAP12_S_4_19m)
GATGCCACTGACGAGAACGGGGACGAGGAGGAGCGCAGGGAGGAGAAGGC CAAGGCCGAGAAGGCTTTCACGGAGGTCGACAGCGCCGCCAAGGGGTGGG TGGAAGAGAGCCAGTTTGAGGCCCTGATGGAGGCGGTCGGCACCACCTAC GCCGTCGAGGACCACAAACCGAAACTGCTAGCGATCTGTACGGCCGGCCG GTTGGAAAAGCAGTCGTTCTTGGCGTGGTACATGGACTGGTTGTTCGGCG AGGAGGAGTCATCAGACGACGAGTGGGGGGAAGGGGACGAGAGCAGCCCC AACGCCGTCGGGCGAGCACCGAAGGACGCCGGGTTTGCTGCTTTGGTGAA GAGCCAGGCGGGTGGTTGGAAGTGCGCCGCGTGCTTGGTGTCTAACGCCG AGGCGGCTGTGAAGTGCGCGTCGTGCGAGACCGTAAGGCCGGGGCGAGAG GGTAAGGTGGCGGCGTCTGGTGTGTTGGGTGGAGCAGGCATCTTGGGAGG GTCCAGCGGCGCGTCCGGCGGAGGCGGGGGTTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15063:3371..3904-

>mRNA_Ecto-sp13_S_contig15063.3824.1 ID=mRNA_Ecto-sp13_S_contig15063.3824.1|Name=mRNA_Ecto-sp13_S_contig15063.3824.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15063:3371..3904- (Ectocarpus species13 EcNAP12_S_4_19m)
GATGCCACTGACGAGAACGGGGACGAGGAGGAGCGCAGGGAGGAGAAGGC
CAAGGCCGAGAAGGCTTTCACGGAGGTCGACAGCGCCGCCAAGGGGTGGG
TGGAAGAGAGCCAGTTTGAGGCCCTGATGGAGGCGGTCGGCACCACCTAC
GCCGTCGAGGACCACAAACCGAAACTGCTAGCGATCTGTACGGCCGGCCG
GTTGGAAAAGCAGTCGTTCTTGGCGTGGTACATGGACTGGTTGTTCGGCG
AGGAGGAGTCATCAGACGACGAGTGGGGGGAAGGGGACGAGAGCAGCCCC
AACGCCGTCGGGCGAGCACCGAAGGACGCCGGGTTTGCTGCTTTGGTGAA
GAGCCAGGCGGGTGGTTGGAAGTGCGCCGCGTGCTTGGTGTCTAACGCCG
AGGCGGCTGTGAAGTGCGCGTCGTGCGAGACCGTAAGGCCGGGGCGAGAG
GGTAAGGTGGCGGCGTCTGGTGTGTTGGGTGGAGCAGGCATCTTGGGAGG
GTCCAGCGGCGCGTCCGGCGGAGGCGGGGGTTTC
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