mRNA_Ecto-sp13_S_contig15063.3823.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15063.3823.1
Unique NamemRNA_Ecto-sp13_S_contig15063.3823.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15063.3823.1 vs. uniprot
Match: D8LRY5_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY5_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 4.220e-40
Identity = 101/124 (81.45%), Postives = 103/124 (83.06%), Query Frame = 1 
Query:   43 HFFGPGSTGEVDAQGEGVADAGSSPRAGGILSPRALENLTPRSRARRRASASVKLRRGSVGPAAGQHKTASIGGLGGGNAAIGSLGGXXXXXXAGADHEETGTKKEE---EAGPSLFGGEPKLY 405
            HFFGPGS GEVDAQGEGV DAGSSPRAGGILSPRALENLTPRSRARRRASASVKLRRGS+GPAAGQHKTASIGGLGGGNAAI S+GGXXXXXX                 E GPSLFGGEPKLY
Sbjct: 2508 HFFGPGSRGEVDAQGEGVPDAGSSPRAGGILSPRALENLTPRSRARRRASASVKLRRGSIGPAAGQHKTASIGGLGGGNAAIVSVGGXXXXXXXXXXXXXXXXXXXXXXXEDGPSLFGGEPKLY 2631
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BLAST of mRNA_Ecto-sp13_S_contig15063.3823.1 vs. uniprot
Match: A0A6H5K3W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3W3_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 2.300e-39
Identity = 96/100 (96.00%), Postives = 96/100 (96.00%), Query Frame = 1 
Query:    1 RDGGXXXXXXXXXXHFFGPGSTGEVDAQGEGVADAGSSPRAGGILSPRALENLTPRSRARRRASASVKLRRGSVGPAAGQHKTASIGGLGGGNAAIGSLG 300
            RDG XXXXXXXXXXHFFGPGS GEVDAQGEGVADAGSSPRAGGILSPRALENLTPR RARRRASASVKLRRGSVGPAAGQ KTASIGGLGGGNAAIGSLG
Sbjct:  120 RDGXXXXXXXXXXXHFFGPGSRGEVDAQGEGVADAGSSPRAGGILSPRALENLTPRCRARRRASASVKLRRGSVGPAAGQQKTASIGGLGGGNAAIGSLG 219
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15063.3823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRY5_ECTSI4.220e-4081.45N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5K3W3_9PHAE2.300e-3996.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15063contigEcto-sp13_S_contig15063:1318..2977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score164.9
Seed ortholog evalue2.7e-38
Seed eggNOG ortholog2880.D8LRY5
Model size1054
KEGG koko:K09566
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0865@2759
EC5.2.1.8
Cds size408
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03041,ko03110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462802.007278-UTR-Ecto-sp13_S_contig15063:1317..19611681462802.007278-UTR-Ecto-sp13_S_contig15063:1317..1961Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15063 1318..1961 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462802.0205197-CDS-Ecto-sp13_S_contig15063:1961..22421681462802.0205197-CDS-Ecto-sp13_S_contig15063:1961..2242Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15063 1962..2242 -
1681462802.029693-CDS-Ecto-sp13_S_contig15063:2850..29771681462802.029693-CDS-Ecto-sp13_S_contig15063:2850..2977Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15063 2851..2977 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15063.3823.1prot_Ecto-sp13_S_contig15063.3823.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15063 1962..2977 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15063.3823.1

>prot_Ecto-sp13_S_contig15063.3823.1 ID=prot_Ecto-sp13_S_contig15063.3823.1|Name=mRNA_Ecto-sp13_S_contig15063.3823.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=136bp
RDGGGGGGGGGGGGHFFGPGSTGEVDAQGEGVADAGSSPRAGGILSPRAL
ENLTPRSRARRRASASVKLRRGSVGPAAGQHKTASIGGLGGGNAAIGSLG
GGGAGAGAGADHEETGTKKEEEAGPSLFGGEPKLY*
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mRNA from alignment at Ecto-sp13_S_contig15063:1318..2977-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15063.3823.1 ID=mRNA_Ecto-sp13_S_contig15063.3823.1|Name=mRNA_Ecto-sp13_S_contig15063.3823.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1660bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15063:1318..2977- (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGACGGTGGCGGCGGTGGCGGCGGCGGTGGCGGCGGGGGCCACTTCTT
CGGCCCGGGCAGCACGGGCGAGGTGGATGCGCAGGGTGAGGGTGTTGCGG
ACGCGGGAAGCAGCCCCCGGGCGGGAGGTAAGGCGAACTTGTTTGTAAAA
TTTTAGAAGGATGATGGCATTTGAGTTGGTGATTTTTTGTGCTGCCAGGC
CAAGACGAGTGGAGTGGAGTGGTAGTTTCCGAGACGTTTTTTTTCGGGAG
GGAAATGCGGCTCTTTGCGGTTGGGGGGGGGGGGGTGACTGTCGACTTGT
GTGGACGTTCAACGAATGCTTGCCGTGCTTGTGATCATGTACGAGAGCCG
CTTGTCGCAAGCAGCAGCTTTGCTTTGCTTGTTCGATCCGTCCTGTTCAT
CAGCCGTGCTCACGATTTATTCCTACTTGTACCCTGTTATTGTTTTGCCC
ATCCACCTGAAAATCCCGATCCGTGGCTACACCGCAGGCCTCCCCCGCGA
CCCATTTGTCTCGCTTTTCAATGCCAGAATGGTGCGGTGGTTCTTTACCC
CGGAGTGTAGATGCTCATTTCCCACGAACGTATGTCGATGCACAGAAGAA
AAACGTCTGGCAGTCTAGCAGCTCGACAATTCTCTAGACTACCATAGACC
ACCCGGGCGATCGGCTCCCACCTGTTTCTCCTTCCCGTTACACAAAACGG
TACAGCTAACGCCTCCCCCCCCCCCTTATGCGCAGGAATACTTTCGCCGA
GGGCGTTGGAAAACCTCACGCCCAGGTCTAGAGCCCGCAGACGGGCAAGC
GCGTCAGTAAAGCTCCGGAGGGGATCAGTCGGGCCGGCGGCTGGGCAGCA
CAAGACAGCGTCAATCGGAGGGCTGGGCGGCGGTAACGCGGCGATTGGTT
CTCTCGGCGGCGGCGGCGCAGGCGCAGGCGCAGGCGCCGACCACGAGGAG
ACTGGGACGAAAAAGGAGGAGGAGGCCGGGCCGTCCCTGTTCGGCGGAGA
GCCCAAGCTCTACTGATGATCGATCGGCTCTACCGCATGCTGTCTCCGAA
GGGGGGGCGTAACGCCGCTGGTAAAAAGTGATGCTCGGCGCTAGGCCGAG
GCTCGACCTAGAGGGTCTGGTCCGTCACCAGCGGCAGAATAGACGCGGTG
GTGGATGTTTGCGGCCTTGTGGCGGATTCTGAAACAAGGAGGCGTTGGGA
CAAGGACGGGGAGATCGTGAGGGACAAGAGTCTTTGATCTCGGGGCGAGC
TGGCGGCAACGAGAGCCGGCGGCAGTGATCACCGAGGTGGCGCTGGCCTC
CGCAAGACGGGCTCCGGGACCGATGGTTTGTTTATCGTTAGAATGTAGGG
GCGGTTGTAGGCGCAGAAGAGAGGGTTGGAAGCACGTCGAGTGTTCGGGG
TAGAGGATAGTCAAGTCTCCAGGTGGGACTCATGTTTGTTTGAGGGTGTT
GACAATTTGCTGGGAGAGTGTGCCAGAGCTGGTCGGGAAGGGAGTGGTGA
AGAACGCGTACAGAGATTGGTGCCCTCCGTGGACAGGGTCAAGGGGTAGG
CGTTGAACCCCGTGAGCTGAAAGCGTAAGGTGGCCTCTGCTCATCCCGTC
CATCGCTGGAGAAGATGTTTATTGGTTCACGCAGCACACATTATCAAATC
AACTATCGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15063:1318..2977-

>mRNA_Ecto-sp13_S_contig15063.3823.1 ID=mRNA_Ecto-sp13_S_contig15063.3823.1|Name=mRNA_Ecto-sp13_S_contig15063.3823.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15063:1318..2977- (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGACGGTGGCGGCGGTGGCGGCGGCGGTGGCGGCGGGGGCCACTTCTT
CGGCCCGGGCAGCACGGGCGAGGTGGATGCGCAGGGTGAGGGTGTTGCGG
ACGCGGGAAGCAGCCCCCGGGCGGGAGGAATACTTTCGCCGAGGGCGTTG
GAAAACCTCACGCCCAGGTCTAGAGCCCGCAGACGGGCAAGCGCGTCAGT
AAAGCTCCGGAGGGGATCAGTCGGGCCGGCGGCTGGGCAGCACAAGACAG
CGTCAATCGGAGGGCTGGGCGGCGGTAACGCGGCGATTGGTTCTCTCGGC
GGCGGCGGCGCAGGCGCAGGCGCAGGCGCCGACCACGAGGAGACTGGGAC
GAAAAAGGAGGAGGAGGCCGGGCCGTCCCTGTTCGGCGGAGAGCCCAAGC
TCTACTGA
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