mRNA_Ecto-sp13_S_contig15060.3822.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15060.3822.1
Unique NamemRNA_Ecto-sp13_S_contig15060.3822.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15060.3822.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 4.540e-43
Identity = 124/148 (83.78%), Postives = 131/148 (88.51%), Query Frame = 1 
Query:    1 MRIRTEATHEELKAGLEASHAKQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEVKILNKKVMKPGPDSESFLPNEGGLALKQRQAVTETA-DDFLERAQERAPTVGNDVVTLRQVVEAVELLKEVHSQYDELHREHDAKLSRFQ 441
            MR+RTEATHEELKAGLEASH    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    ILNKKVMKPGPDS+S + + GGLALKQRQAVTETA DDFLERAQERAP  GNDVVTL Q+ EAVELLKEVHS+ DELHREHDAKL+RFQ
Sbjct:  772 MRMRTEATHEELKAGLEASHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILNKKVMKPGPDSDSLVASGGGLALKQRQAVTETALDDFLERAQERAPAAGNDVVTLGQLAEAVELLKEVHSKNDELHREHDAKLTRFQ 919
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BLAST of mRNA_Ecto-sp13_S_contig15060.3822.1 vs. uniprot
Match: A0A6H5KC16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC16_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 6.140e-43
Identity = 115/163 (70.55%), Postives = 124/163 (76.07%), Query Frame = 1 
Query:    1 MRIRTEATHEELKAGLEASHAKQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS---------------EVKILNKKVMKPGPDSESFLPNEGGLALKQRQAVTETADDFLERAQERAPTVGNDVVTLRQVVEAVELLKEVHSQYDELHREHDAKLSRFQR 444
            MRIRTEATHEELKAGLEA+  +   XXXXXXXXXXXXXXXXXXXXXXX                       +VKILNKKVMK GPDS+S +P+ GGLALKQRQAVTET DDFLERAQERAP   NDVVTL Q+ EAVELLK+ HSQY+ELHREHDAKL RFQR
Sbjct:  189 MRIRTEATHEELKAGLEAAKEENARXXXXXXXXXXXXXXXXXXXXXXXSMHTVLPMSTFDASMLHAAAFGFQVKILNKKVMKIGPDSDSLVPSGGGLALKQRQAVTETVDDFLERAQERAPAADNDVVTLGQLAEAVELLKDEHSQYNELHREHDAKLGRFQR 351
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BLAST of mRNA_Ecto-sp13_S_contig15060.3822.1 vs. uniprot
Match: D7FUA1_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 2.180e-42
Identity = 126/149 (84.56%), Postives = 131/149 (87.92%), Query Frame = 1 
Query:    1 MRIRTEATHEELKAGLEASHAKQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEVKILNKKVMKPGPDSESFLPNEGGLALKQRQAVTETA-DDFLERAQERAPTVGNDVVTLRQVVEAVELLKEVHSQYDELHREHDAKLSRFQR 444
            MRIRTEATHEELKAGLEASH    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   KILNKKVMKPGPDS+S + +    ALKQRQAVTETA DDFLERAQERAP  GNDVVTL Q+ EAVELLKEVHS+YDELHREHDAKLSRFQR
Sbjct:  799 MRIRTEATHEELKAGLEASHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKILNKKVMKPGPDSDSLVAS----ALKQRQAVTETAVDDFLERAQERAPAAGNDVVTLGQLTEAVELLKEVHSKYDELHREHDAKLSRFQR 943
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BLAST of mRNA_Ecto-sp13_S_contig15060.3822.1 vs. uniprot
Match: A0A6H5K7G3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7G3_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 4.240e-41
Identity = 122/163 (74.85%), Postives = 128/163 (78.53%), Query Frame = 1 
Query:    1 MRIRTEATHEELKAGLEASHAKQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEV--------------KILNKKVMKPGPDSESFLPNEGGLALKQRQAV-TETADDFLERAQERAPTVGNDVVTLRQVVEAVELLKEVHSQYDELHREHDAKLSRFQR 444
            MRIRTEA HEELKAGLEASH    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 KI+NK V K GPDS+S +P+ GGLALKQRQAV TET DDFLERAQERAP  GNDVVTL Q+ EAVE LKEVHS+YDELHREHDAKL RFQR
Sbjct:   75 MRIRTEARHEELKAGLEASHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIVNKMVAKTGPDSDSLVPSGGGLALKQRQAVVTETVDDFLERAQERAPAAGNDVVTLGQLAEAVEPLKEVHSKYDELHREHDAKLGRFQR 237
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BLAST of mRNA_Ecto-sp13_S_contig15060.3822.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 9.720e-39
Identity = 121/169 (71.60%), Postives = 130/169 (76.92%), Query Frame = 1 
Query:    1 MRIRTEATHEELKAGLEASHAKQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSE---------------------VKILNKKVMKPGPDSESFLPNEGGLALKQRQAVTETADDFLERAQERAPTVGNDVVTLRQVVEAVELLKEVHSQYDELHREHDAKLSRFQR 444
            MRIRTEATHEELKAGLEASH    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +E                     VKILNK VMKPGPDS+S +P+ GG AL+QRQAVTE  DDFLER+QERAP  GNDVVTL Q+ EAVELLKEV S++DELHREHDA LSR QR
Sbjct:  984 MRIRTEATHEELKAGLEASHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAENARLNDVXXXXXXXXXXXXXXVKILNKMVMKPGPDSDSLVPSGGGQALQQRQAVTERVDDFLERSQERAPAAGNDVVTLGQLAEAVELLKEVLSKHDELHREHDATLSRVQR 1152
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BLAST of mRNA_Ecto-sp13_S_contig15060.3822.1 vs. uniprot
Match: A0A6H5JP57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP57_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 7.520e-23
Identity = 79/124 (63.71%), Postives = 87/124 (70.16%), Query Frame = 1 
Query:    1 MRIRTEATHEELKAGLEASHAKQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS-----EVKILNKKVMKPGPDSESFLPNEGGLALKQRQAVTETADDFLERAQERAP----TVGNDVVTL 345
            MRIRTEATHEELKAGLEA+  +   XXXXXXXXXXXXXXXXX             +     +VKILNKKVMK GPDS+S +P+ GGLALKQRQAVTET DDFLERAQER        G +V TL
Sbjct:   76 MRIRTEATHEELKAGLEAAKEENARXXXXXXXXXXXXXXXXXALPMSTFDASMLHAAAFGFQVKILNKKVMKTGPDSDSLVPSGGGLALKQRQAVTETVDDFLERAQERGKFPLLCTGLEVATL 199
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BLAST of mRNA_Ecto-sp13_S_contig15060.3822.1 vs. uniprot
Match: A0A6H5JGW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW4_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.840e-18
Identity = 80/102 (78.43%), Postives = 89/102 (87.25%), Query Frame = 1 
Query:    7 IRTEATHEELKAGLEASHAKQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEVKILNKKVMKPGPDSESFLPNEGGLALKQRQAVTETADDFLERAQER 312
            +RTEA H EL++GL+ASH    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS+VKIL+KKVMKP PDS+SF+P+ G   LKQRQAVTE  DDFLERAQER
Sbjct:   74 VRTEARHVELESGLKASHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKVKILHKKVMKPEPDSDSFVPSGGRQTLKQRQAVTERVDDFLERAQER 175
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BLAST of mRNA_Ecto-sp13_S_contig15060.3822.1 vs. uniprot
Match: A0A6H5JHX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX7_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 5.320e-14
Identity = 37/44 (84.09%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:  313 APTVGNDVVTLRQVVEAVELLKEVHSQYDELHREHDAKLSRFQR 444
            AP   NDVVTL QV EAVELLKEVH +YDELHREHDAKLSRFQR
Sbjct:   15 APAASNDVVTLGQVAEAVELLKEVHCKYDELHREHDAKLSRFQR 58
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15060.3822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FUA2_ECTSI4.540e-4383.78Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
A0A6H5KC16_9PHAE6.140e-4370.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUA1_ECTSI2.180e-4284.56Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
A0A6H5K7G3_9PHAE4.240e-4174.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUA0_ECTSI9.720e-3971.60Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
A0A6H5JP57_9PHAE7.520e-2363.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGW4_9PHAE3.840e-1878.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHX7_9PHAE5.320e-1484.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15060contigEcto-sp13_S_contig15060:2105..4239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score161.8
Seed ortholog evalue2.5e-37
Seed eggNOG ortholog2880.D7FUA2
Model size446
KEGG koko:K04730,ko:K04733
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG ModuleM00686
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
Exons4
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs2QQYD@2759,COG4886@1
EC2.7.11.1
Cds size444
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462801.9374664-CDS-Ecto-sp13_S_contig15060:2104..22351681462801.9374664-CDS-Ecto-sp13_S_contig15060:2104..2235Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15060 2105..2235 -
1681462801.9544673-CDS-Ecto-sp13_S_contig15060:2832..29101681462801.9544673-CDS-Ecto-sp13_S_contig15060:2832..2910Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15060 2833..2910 -
1681462801.9653738-CDS-Ecto-sp13_S_contig15060:3776..38401681462801.9653738-CDS-Ecto-sp13_S_contig15060:3776..3840Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15060 3777..3840 -
1681462801.9758995-CDS-Ecto-sp13_S_contig15060:4068..42391681462801.9758995-CDS-Ecto-sp13_S_contig15060:4068..4239Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15060 4069..4239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15060.3822.1prot_Ecto-sp13_S_contig15060.3822.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15060 2105..4239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15060.3822.1

>prot_Ecto-sp13_S_contig15060.3822.1 ID=prot_Ecto-sp13_S_contig15060.3822.1|Name=mRNA_Ecto-sp13_S_contig15060.3822.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp
MRIRTEATHEELKAGLEASHAKQVELEAGLEAAQAKSTTLEDVLEAAKAK
NAKLESEVKILNKKVMKPGPDSESFLPNEGGLALKQRQAVTETADDFLER
AQERAPTVGNDVVTLRQVVEAVELLKEVHSQYDELHREHDAKLSRFQR
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mRNA from alignment at Ecto-sp13_S_contig15060:2105..4239-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15060.3822.1 ID=mRNA_Ecto-sp13_S_contig15060.3822.1|Name=mRNA_Ecto-sp13_S_contig15060.3822.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15060:2105..4239- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCATTCGCACGGAAGCAACGCACGAAGAGCTTAAAGCCGGTCTAGA
AGCTTCTCATGCGAAACAGGTCGAGCTTGAAGCTGGTCTAGAAGCGGCTC
AGGCAAAGAGCACCACACTAGAAGACGTTCTCGAAGCGGCAAAAGCAAAA
AACGCCAAGCTGGAGTCTGAGGTACGGTGACTGTGCTGTACAGTATTCAG
TGGTTCAGAAACCTCTCTTTCATCATCATTTGCCAGTCTTTTAGAGAGGC
TCACTATCAAATATGCACATGGTCGTTGAGTACGGCCATCGTCGTGGAAC
AGAGCTGCGTGATGGGCTGTCAAAACCGGGGCGATGATTACCGGCAGATG
TCTGCGTTTGACACCAGCAGGAATGCATGCCGTCGGGATTGGTTTCCAGG
TGAAAATCCTGAACAAGAAAGTGATGAAGCCCGGGCCTGACTCGGAAAGC
TTTTTGCCCAACGGTAAGTGCCATTGCCAGCTGAGCTACGTTGTGCGTTT
TGCCCCTTGGGTGCTGAAGCTCCTTTTTTGCAGATTGAGCAAGGCCGACT
CACTCTCGTCCACAATCCCGCGTCACCCGCACATGAAAATAGTTCCGTAT
CAACAGGTATCTGTAGACCACCCGACCTTTCATCGTTGCCAACGAGAACG
TCATCGGCGATGGTTAGATATTGTTTCACTGGCAACGTTCTCTTCGCCAC
GAAACTCAGCGTTAAATACCGGCAAATCAAGGTGTACGGGTGGCATCCTC
TGTGGAAATTCTCTGGACGTTAGTACAAGAGAAATTGAGTCCTCATTGAT
CTTACCCACTTGGCGGGTATATTTACCCTTAAGTAGAAGAACGTTACAAT
GGTGATTCTCGTGCCATTGCGGATCACCTGGAGCAAGTTTATTGATGGAG
AGTGCCATTATCCAATCATTTCCGCCGTGCTTGGGGCGATAGAACCGCGG
GAACATGCGATGACACTCTCTTTGCTCAGATCTCGATCTTGTGGTGCATG
ACTAATTTTGCCATGATTCAGTAGCGCTGTCGTCTGGGCGTGCCGCGTGA
CCTCACCGTTTGCCTGTCAACGTCAGCCCGGGGGGCCTACGGTGTCAGCA
CATAAAACCCACGGCTGTACGCCCGTTCCCATGGCTGTACGCCTGTTGGA
TTTCATCTGATTGCTTCCTCTTCTGTGGAAATCATCTAATTGTTTTCTCG
TGGTGCTGGCAGTCGAATGTGATCTACAATGAATCCTCATCTTACGCCAC
CATTCAATGCGTACATGACCCTCGCGTAATGCTGACGCACGTCATGTCAT
GTTCGGGTGCAATCTACGACCATCGACAGAGGGGGGGCTAGCTTTGAAGC
AGCGGCAAGCTGTCACCGAGACAGCGGATGACTTTCTCGAAAGGGCTCAA
GAGAGAGGTAAATCCCCAATCTTCTGCACGGGCTCGAGGTGGCGACCCTC
GCGTTGTTCTGCGCCGGCAGTGTGTGAGGCAACTTTGAGTCGAAGCACGA
ATGCCTTAAGGAGCGTTTGTTTGTTGTCCAGACGAGACCAAGTGAACGAG
GAAAGTATCTCCCCGTTGCTTTGGAAGAGCAAACGTCCGACTTGCACGGA
CATTTCGTGCATGGATGCGTTCGTCTCTGAGTGAAGATCCATTCGCCTCA
AGCGCAACTGACGTCGAATCCTGATCTCATCGAATGCTCGGTAGAGGCGT
TGCCGTGTTTCGCTAGCCTTCTCCCCTGATATTGGATAGTACCCTCATGC
GCGAGCATTCATTTGTTCGAGTGCTCTGTTTTGCGTGGCTCCTTGTCATG
TAAAACACTTCGCCGGTGAGAAAGTGCTCCACCCGTTTGCCTGGTTTGAC
CTTACAATGCCCCCCCTATCTCACGAGTCACAATCTCACCGTCACGCGTT
CGCAAGTGGAGACCCTCCTGGCAAAGACATAAATGTCGCCCTCTCGCTTG
CACCTTGGGGTGTTTTGCGTCTGCCTGCTCGACGGGGTGTTGTTTGCACA
TCAGCACCGACTGTGGGCAATGATGTGGTGACCCTAAGGCAGGTGGTAGA
GGCCGTGGAACTCCTGAAGGAAGTGCATAGCCAGTACGATGAGCTGCATC
GCGAGCATGATGCCAAGCTGAGCCGTTTTCAGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15060:2105..4239-

>mRNA_Ecto-sp13_S_contig15060.3822.1 ID=mRNA_Ecto-sp13_S_contig15060.3822.1|Name=mRNA_Ecto-sp13_S_contig15060.3822.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15060:2105..4239- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCATTCGCACGGAAGCAACGCACGAAGAGCTTAAAGCCGGTCTAGA
AGCTTCTCATGCGAAACAGGTCGAGCTTGAAGCTGGTCTAGAAGCGGCTC
AGGCAAAGAGCACCACACTAGAAGACGTTCTCGAAGCGGCAAAAGCAAAA
AACGCCAAGCTGGAGTCTGAGGTGAAAATCCTGAACAAGAAAGTGATGAA
GCCCGGGCCTGACTCGGAAAGCTTTTTGCCCAACGAGGGGGGGCTAGCTT
TGAAGCAGCGGCAAGCTGTCACCGAGACAGCGGATGACTTTCTCGAAAGG
GCTCAAGAGAGAGCACCGACTGTGGGCAATGATGTGGTGACCCTAAGGCA
GGTGGTAGAGGCCGTGGAACTCCTGAAGGAAGTGCATAGCCAGTACGATG
AGCTGCATCGCGAGCATGATGCCAAGCTGAGCCGTTTTCAGAGG
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