mRNA_Ecto-sp13_S_contig1506.3821.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1506.3821.1
Unique NamemRNA_Ecto-sp13_S_contig1506.3821.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1506.3821.1 vs. uniprot
Match: D7FNP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP9_ECTSI)

HSP 1 Score: 946 bits (2445), Expect = 0.000e+0
Identity = 519/605 (85.79%), Postives = 542/605 (89.59%), Query Frame = 1 
Query:    1 IPDLQGQVGTHQTLMHDIRRENFVTQGAFMAAQLCKADKGTVKSQRGKLDLVCELLISAGILEEATGGGLCVCKKEEETKPCVEVQPAHTGIGRTAFLEESLTHAEEAIARIDRSVEVVSVEAKRTAAVAAGASSKLDKVAARYGLVEERCARXXXXXXXXXXXXXXXXXXSRNRLDESLEETRELIETNSTRIFHLAAEVEGLASASKASPAAARRLALAREETGDIFSVEVADFPREQQEGHGRTTATPPKATVGKRKDEIREKLKPGVGRAKKDLGEAPNLSTLAEGENHHVPCRPGVLNEAGSSPREDSAKTRGMESNLQHPARPSAQRRCNSTFSGRRVVAVSPEIKDPPAGLTAGPVRPPEYHATPGVWSRASSWSLLSNAAATHGEGGGTDIGTGGERKGMILRRDYSMRNLGLTSQTHDGPPDVTRIKLTGTAPAIDPTLVSAGAVLDVPLHSR-ATAVSGRMEGSDTAGSHRGDEENAREALPRDNSPRKAPNHDVGEACDTGNKDRQPPVPSQALAEMTAQEVAEALGMAAVAQGRPHNTAAAEATDENLGGGLSGRLRSSGTRLACLGNPLHDLGGNEEXXXXXXXXXTAAEGR 1812
            + DLQGQVGTHQ LMHDIRRENFVTQGAFMAAQLCKADKGTVKSQRGKLDLVCELLISAGI EEATGGGLCV +KEEETKPC  V+PAH GIGRTAFLEESLTHAEEAIARIDRSVE  SVEAKRTAAVAAGA+S+LDKVAAR GLVE     XXXXXXXXXXXX      ++NRLDESLEETRELIETNSTRIFHLAAEVEGL SASKASPAAARRLALAREETGDIFSVEVADFP EQQEGHGRTTATPPKATVGKRKD IRE+LKP VGRAKKD G+ P+LST AEGENHHV CRPGVL+E GSSPREDSAKTRGMESNLQHPA PSA+RRCNSTFSGRRVV VSPEIKDPPAGL AGPVRPPEYHA PGVWSRASSW LLSNAAAT GEGGGTD GTG ERKGMILRRDYSM NLGLTS+THDGPPD TRIKL GTAPAIDP+LVSAGAV DVPLH   ATA++ R+EGSDTAG+ RGDEENAREALPRDNSP KAPNH VGEAC TGNKDRQPPVPSQALA MTAQEVAEALG+AAVAQGRPH+TAAA+ATD+NL GGLSGRL S GTRLACLGNPLHDLGGNEE         TAA+GR
Sbjct:   97 VADLQGQVGTHQRLMHDIRRENFVTQGAFMAAQLCKADKGTVKSQRGKLDLVCELLISAGIFEEATGGGLCVREKEEETKPCAAVEPAHAGIGRTAFLEESLTHAEEAIARIDRSVEAASVEAKRTAAVAAGANSRLDKVAARCGLVEXXXXXXXXXXXXXXXXXTAAVEENKNRLDESLEETRELIETNSTRIFHLAAEVEGLVSASKASPAAARRLALAREETGDIFSVEVADFPPEQQEGHGRTTATPPKATVGKRKDTIRERLKPRVGRAKKDPGKTPHLSTFAEGENHHVSCRPGVLDEPGSSPREDSAKTRGMESNLQHPAPPSARRRCNSTFSGRRVVVVSPEIKDPPAGLIAGPVRPPEYHAAPGVWSRASSWPLLSNAAATRGEGGGTDTGTGEERKGMILRRDYSMPNLGLTSRTHDGPPDATRIKLAGTAPAIDPSLVSAGAVGDVPLHPHVATAIADRIEGSDTAGTPRGDEENAREALPRDNSPMKAPNHHVGEACGTGNKDRQPPVPSQALAAMTAQEVAEALGIAAVAQGRPHDTAAAKATDDNLDGGLSGRLTSPGTRLACLGNPLHDLGGNEELSSDDASSTTAADGR 701
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BLAST of mRNA_Ecto-sp13_S_contig1506.3821.1 vs. uniprot
Match: A0A6H5L344_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L344_9PHAE)

HSP 1 Score: 891 bits (2302), Expect = 0.000e+0
Identity = 495/575 (86.09%), Postives = 515/575 (89.57%), Query Frame = 1 
Query:   43 MHDIRRENFVTQGAFMAAQLCKADKGTVKSQRGKLDLVCELLISAGILEEATGGGLCVCKKEEETKPCVEVQPAHTGIGRTAFLEESLTHAEEAIARIDRSVEVVSVEAKRTAAVAAGASSKLDKVAARYGLVEERCARXXXXXXXXXXXXXXXXXXSRNRLDESLEETRELIETNSTRIFHLAAEVEGLASASKASPAAARRLALAREETGDIFSVEVADFPREQQEGHGRTTATPPKATVGKRKDEIREKLKPGVGRAKKDLGEAPNLSTLAEGENHHVPCRPGVLNEAGSSPREDSAKTRGMESNLQHPARPSAQRRCNSTFSGRRVVAVSPEIKDPPAGLTAGPVRPPEYHATPGVWSRASSWSLLSNAAATHGEGGGTDIGTGGERKGMILRRDYSMRNLGLTSQTHDGPPDVTRIKLTGTAPAIDPTLVSAGAVLDVPLHSRATAVSGRMEGSDTAGSHRGDEENAREALPRDNSPRKAPNHDVGEACDTGNKDRQPPVPSQALAEMTAQEVAEALGMAAVAQGRPHNTAAAEATDENLGGGLSGRLRSSGTRLACLGNPLHDLGGNEE 1767
            MHDIRRENFVTQGAFMAAQLCKADKGTVKSQRGKLDLVCELLISAGI EEATGGGLCV +++EE KPC EVQPAH GIGRTAFLEESLTHAEEAIARIDRSVE  SVEAKRTAAVAAGA+S+LDKVAAR GL+EE    XXXXXXXXXXXXXXXXXX        L+ETRELIETNSTRIFHLAAEVEGLASASKASPAAARRLALAREETGD+FSVEVA F  +QQEGHGR TATPP ATVG+RKD+IRE+LKPGVGRAK   GE PNLST AEGE HH PCRPGVL+E G+SPRE SA+TRGMESNLQHPA PSAQR CNSTFSGRRV  VSPEIK PPAG+ AGPVRPPEYHATPGVWSRASSW LLSN AATHGEG GTDIGTGGERKGMILRRDYSM NLGLTS+THDGPPDVTRIKL G AP IDP LVSAGAVLDVPL   A+AV+ RMEGSDTA  HRGDEENAREALPRDNSP KAPNH VGEACDTGNKDRQPPVPSQALA MTAQEVAEALGMAAVAQGRPHNTA AEAT+E LGGGLSGRLRS GTRLACLGNPLHDLGGNEE
Sbjct:    1 MHDIRRENFVTQGAFMAAQLCKADKGTVKSQRGKLDLVCELLISAGIFEEATGGGLCV-REKEEVKPCAEVQPAHAGIGRTAFLEESLTHAEEAIARIDRSVEAASVEAKRTAAVAAGANSRLDKVAARCGLIEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKETRELIETNSTRIFHLAAEVEGLASASKASPAAARRLALAREETGDVFSVEVAHFSPKQQEGHGRATATPPTATVGERKDDIRERLKPGVGRAKTGPGETPNLSTFAEGEIHHAPCRPGVLDEPGNSPRECSARTRGMESNLQHPAPPSAQRGCNSTFSGRRVAVVSPEIKGPPAGMIAGPVRPPEYHATPGVWSRASSWPLLSNVAATHGEGSGTDIGTGGERKGMILRRDYSMPNLGLTSRTHDGPPDVTRIKLAGAAPIIDPALVSAGAVLDVPLDPHASAVADRMEGSDTAAGHRGDEENAREALPRDNSPMKAPNHHVGEACDTGNKDRQPPVPSQALAAMTAQEVAEALGMAAVAQGRPHNTAGAEATEEKLGGGLSGRLRSPGTRLACLGNPLHDLGGNEE 574
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1506.3821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNP9_ECTSI0.000e+085.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L344_9PHAE0.000e+086.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1506contigEcto-sp13_S_contig1506:14788..16602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1815
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_004700.1
Cds size1815
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462801.9061322-CDS-Ecto-sp13_S_contig1506:14787..166021681462801.9061322-CDS-Ecto-sp13_S_contig1506:14787..16602Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1506 14788..16602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1506.3821.1prot_Ecto-sp13_S_contig1506.3821.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1506 14788..16602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1506.3821.1

>prot_Ecto-sp13_S_contig1506.3821.1 ID=prot_Ecto-sp13_S_contig1506.3821.1|Name=mRNA_Ecto-sp13_S_contig1506.3821.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=605bp
IPDLQGQVGTHQTLMHDIRRENFVTQGAFMAAQLCKADKGTVKSQRGKLD
LVCELLISAGILEEATGGGLCVCKKEEETKPCVEVQPAHTGIGRTAFLEE
SLTHAEEAIARIDRSVEVVSVEAKRTAAVAAGASSKLDKVAARYGLVEER
CARTDERCRQVDECCTAAVEESRNRLDESLEETRELIETNSTRIFHLAAE
VEGLASASKASPAAARRLALAREETGDIFSVEVADFPREQQEGHGRTTAT
PPKATVGKRKDEIREKLKPGVGRAKKDLGEAPNLSTLAEGENHHVPCRPG
VLNEAGSSPREDSAKTRGMESNLQHPARPSAQRRCNSTFSGRRVVAVSPE
IKDPPAGLTAGPVRPPEYHATPGVWSRASSWSLLSNAAATHGEGGGTDIG
TGGERKGMILRRDYSMRNLGLTSQTHDGPPDVTRIKLTGTAPAIDPTLVS
AGAVLDVPLHSRATAVSGRMEGSDTAGSHRGDEENAREALPRDNSPRKAP
NHDVGEACDTGNKDRQPPVPSQALAEMTAQEVAEALGMAAVAQGRPHNTA
AAEATDENLGGGLSGRLRSSGTRLACLGNPLHDLGGNEESSSDDGSSTTA
AEGR*
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mRNA from alignment at Ecto-sp13_S_contig1506:14788..16602-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1506.3821.1 ID=mRNA_Ecto-sp13_S_contig1506.3821.1|Name=mRNA_Ecto-sp13_S_contig1506.3821.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1815bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1506:14788..16602- (Ectocarpus species13 EcNAP12_S_4_19m)
ATTCCAGATCTGCAGGGGCAAGTTGGCACACATCAGACGCTTATGCACGA
CATACGCCGAGAAAACTTCGTCACGCAGGGGGCCTTCATGGCTGCTCAGC
TTTGCAAGGCCGACAAGGGGACTGTCAAATCACAGCGCGGGAAGCTGGAC
CTCGTCTGCGAGCTCCTGATTTCGGCTGGGATTTTAGAAGAAGCGACTGG
CGGCGGCCTTTGTGTTTGCAAGAAAGAAGAAGAAACCAAACCGTGCGTGG
AGGTACAACCAGCACACACCGGAATCGGTCGCACGGCGTTTCTAGAAGAA
AGTCTTACTCACGCCGAGGAGGCTATTGCACGCATTGACAGATCGGTGGA
GGTGGTGAGTGTCGAGGCCAAGCGTACCGCGGCGGTGGCGGCGGGCGCAA
GCTCGAAGTTGGACAAGGTCGCGGCTCGGTATGGCCTGGTAGAGGAGAGG
TGCGCGCGAACGGACGAGAGGTGTCGGCAAGTAGACGAGTGCTGCACCGC
AGCCGTCGAAGAAAGCAGAAATCGGTTGGACGAGAGCCTGGAGGAGACCC
GGGAACTTATCGAGACCAACAGCACGCGAATCTTCCACCTTGCCGCCGAG
GTAGAGGGGCTTGCGAGCGCAAGTAAAGCCTCCCCCGCGGCGGCCAGACG
CCTTGCCCTAGCCCGCGAGGAGACAGGGGATATTTTTTCCGTTGAGGTCG
CAGACTTCCCACGAGAACAGCAAGAAGGGCATGGGCGGACGACTGCGACC
CCTCCCAAAGCAACCGTCGGAAAGCGCAAGGACGAAATCCGCGAAAAGTT
GAAGCCGGGCGTCGGCAGAGCAAAGAAAGACCTGGGCGAAGCGCCCAATC
TGAGCACCCTCGCGGAGGGTGAGAACCACCACGTCCCTTGCCGTCCTGGT
GTTCTCAACGAGGCCGGAAGCTCCCCTCGTGAAGATTCTGCTAAGACTCG
TGGTATGGAGTCGAACCTACAACACCCCGCGCGCCCGTCTGCACAACGTC
GCTGTAACTCAACGTTTTCCGGTCGGCGGGTAGTAGCGGTGTCCCCCGAA
ATCAAGGACCCACCGGCGGGGTTGACCGCCGGTCCAGTTCGGCCGCCGGA
ATACCACGCGACGCCGGGGGTGTGGTCGAGGGCATCATCGTGGTCATTGC
TGTCAAACGCGGCGGCTACTCACGGTGAGGGGGGCGGCACTGATATCGGC
ACGGGCGGGGAGAGAAAAGGAATGATACTACGGCGAGACTACTCGATGCG
AAACCTCGGCCTGACGTCGCAAACCCACGATGGGCCTCCAGATGTGACGA
GGATCAAACTTACCGGCACCGCGCCGGCCATCGATCCGACTCTTGTTTCC
GCCGGGGCTGTGCTTGACGTGCCTCTTCACTCGCGCGCTACTGCGGTCTC
CGGCCGCATGGAGGGCTCGGATACCGCCGGAAGTCACCGCGGTGATGAGG
AAAACGCTCGGGAAGCTCTTCCAAGAGACAACTCCCCGAGGAAAGCACCA
AATCATGACGTGGGGGAAGCTTGTGACACGGGGAACAAAGATCGACAACC
GCCAGTACCATCACAAGCTTTGGCGGAGATGACGGCGCAAGAAGTGGCAG
AAGCCTTGGGTATGGCAGCCGTCGCACAAGGCCGACCACACAACACGGCG
GCGGCGGAGGCGACGGACGAGAATTTGGGCGGCGGCTTGTCGGGAAGGCT
AAGGTCTTCCGGCACCCGGCTGGCGTGCCTTGGGAATCCTCTTCACGATT
TGGGGGGGAACGAAGAATCGTCGAGCGATGATGGGTCGAGCACGACAGCG
GCGGAAGGGCGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1506:14788..16602-

>mRNA_Ecto-sp13_S_contig1506.3821.1 ID=mRNA_Ecto-sp13_S_contig1506.3821.1|Name=mRNA_Ecto-sp13_S_contig1506.3821.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1815bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1506:14788..16602- (Ectocarpus species13 EcNAP12_S_4_19m)
ATTCCAGATCTGCAGGGGCAAGTTGGCACACATCAGACGCTTATGCACGA
CATACGCCGAGAAAACTTCGTCACGCAGGGGGCCTTCATGGCTGCTCAGC
TTTGCAAGGCCGACAAGGGGACTGTCAAATCACAGCGCGGGAAGCTGGAC
CTCGTCTGCGAGCTCCTGATTTCGGCTGGGATTTTAGAAGAAGCGACTGG
CGGCGGCCTTTGTGTTTGCAAGAAAGAAGAAGAAACCAAACCGTGCGTGG
AGGTACAACCAGCACACACCGGAATCGGTCGCACGGCGTTTCTAGAAGAA
AGTCTTACTCACGCCGAGGAGGCTATTGCACGCATTGACAGATCGGTGGA
GGTGGTGAGTGTCGAGGCCAAGCGTACCGCGGCGGTGGCGGCGGGCGCAA
GCTCGAAGTTGGACAAGGTCGCGGCTCGGTATGGCCTGGTAGAGGAGAGG
TGCGCGCGAACGGACGAGAGGTGTCGGCAAGTAGACGAGTGCTGCACCGC
AGCCGTCGAAGAAAGCAGAAATCGGTTGGACGAGAGCCTGGAGGAGACCC
GGGAACTTATCGAGACCAACAGCACGCGAATCTTCCACCTTGCCGCCGAG
GTAGAGGGGCTTGCGAGCGCAAGTAAAGCCTCCCCCGCGGCGGCCAGACG
CCTTGCCCTAGCCCGCGAGGAGACAGGGGATATTTTTTCCGTTGAGGTCG
CAGACTTCCCACGAGAACAGCAAGAAGGGCATGGGCGGACGACTGCGACC
CCTCCCAAAGCAACCGTCGGAAAGCGCAAGGACGAAATCCGCGAAAAGTT
GAAGCCGGGCGTCGGCAGAGCAAAGAAAGACCTGGGCGAAGCGCCCAATC
TGAGCACCCTCGCGGAGGGTGAGAACCACCACGTCCCTTGCCGTCCTGGT
GTTCTCAACGAGGCCGGAAGCTCCCCTCGTGAAGATTCTGCTAAGACTCG
TGGTATGGAGTCGAACCTACAACACCCCGCGCGCCCGTCTGCACAACGTC
GCTGTAACTCAACGTTTTCCGGTCGGCGGGTAGTAGCGGTGTCCCCCGAA
ATCAAGGACCCACCGGCGGGGTTGACCGCCGGTCCAGTTCGGCCGCCGGA
ATACCACGCGACGCCGGGGGTGTGGTCGAGGGCATCATCGTGGTCATTGC
TGTCAAACGCGGCGGCTACTCACGGTGAGGGGGGCGGCACTGATATCGGC
ACGGGCGGGGAGAGAAAAGGAATGATACTACGGCGAGACTACTCGATGCG
AAACCTCGGCCTGACGTCGCAAACCCACGATGGGCCTCCAGATGTGACGA
GGATCAAACTTACCGGCACCGCGCCGGCCATCGATCCGACTCTTGTTTCC
GCCGGGGCTGTGCTTGACGTGCCTCTTCACTCGCGCGCTACTGCGGTCTC
CGGCCGCATGGAGGGCTCGGATACCGCCGGAAGTCACCGCGGTGATGAGG
AAAACGCTCGGGAAGCTCTTCCAAGAGACAACTCCCCGAGGAAAGCACCA
AATCATGACGTGGGGGAAGCTTGTGACACGGGGAACAAAGATCGACAACC
GCCAGTACCATCACAAGCTTTGGCGGAGATGACGGCGCAAGAAGTGGCAG
AAGCCTTGGGTATGGCAGCCGTCGCACAAGGCCGACCACACAACACGGCG
GCGGCGGAGGCGACGGACGAGAATTTGGGCGGCGGCTTGTCGGGAAGGCT
AAGGTCTTCCGGCACCCGGCTGGCGTGCCTTGGGAATCCTCTTCACGATT
TGGGGGGGAACGAAGAATCGTCGAGCGATGATGGGTCGAGCACGACAGCG
GCGGAAGGGCGTTGA
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