mRNA_Ecto-sp13_S_contig1505.3817.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1505.3817.1
Unique NamemRNA_Ecto-sp13_S_contig1505.3817.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1505.3817.1 vs. uniprot
Match: A0A6H5KU26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU26_9PHAE)

HSP 1 Score: 481 bits (1238), Expect = 9.270e-167
Identity = 224/265 (84.53%), Postives = 236/265 (89.06%), Query Frame = 1 
Query:    1 ESYSTLRAHLQDPEVGILLLTYTPRQPSTCTENMLRCAYRAGLRGTALWNEHGDRWRKGNNPRSLQAPGGVGSHNHPLTDPRHGSAAFNGVDVCPRKQGLCPSSTCTTNVNNAVPDPRHAVKCPWGLHRGKGNDPAHPAQSGSSRPCEDCSHPGTTPKKPPLRETRPVPDGCTPILLAFELCPKPTDRDGSLANNPQLTWLLEWKSVFPDLQKRLESRPAWRSPGAAWSQDGAGALTNNGGRWDDASAEGDEVNAEYLWGSSTTV 795
            E++  + A L DPEVG+LLLTYTPRQPSTCTENMLRCAYRAGLRGTALWNEHGDRWR+GN+PRSL AP GVGSHNHPLTDPRHGSAA  GVD CPR+QG CPSSTCTTN  NAV DPRHAVKCP  +  GKGN+ AHP QSGS RPCEDCSHPGTTP KPPLR+TRPVPDGCTPILLAFELCPKPTDRDGSLANNP+L WL EWK VFPDLQKRLE RPAWR+PGAAWSQDGAGAL NNGGRWDDASAEG EV AEYLWGSSTTV
Sbjct:  275 EAFFAMAAELLDPEVGVLLLTYTPRQPSTCTENMLRCAYRAGLRGTALWNEHGDRWREGNDPRSLPAPRGVGSHNHPLTDPRHGSAALKGVDFCPREQGSCPSSTCTTNGTNAVLDPRHAVKCPLEVDNGKGNNLAHPTQSGSPRPCEDCSHPGTTPNKPPLRDTRPVPDGCTPILLAFELCPKPTDRDGSLANNPELAWLSEWKFVFPDLQKRLECRPAWRAPGAAWSQDGAGALKNNGGRWDDASAEGGEVTAEYLWGSSTTV 539
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BLAST of mRNA_Ecto-sp13_S_contig1505.3817.1 vs. uniprot
Match: D8LKP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP4_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 4.240e-55
Identity = 114/265 (43.02%), Postives = 120/265 (45.28%), Query Frame = 1 
Query:    1 ESYSTLRAHLQDPEVGILLLTYTPRQPSTCTENMLRCAYRAGLRGTALWNEHGDRWRKGNNPRSLQAPGGVGSHNHPLTDPRHGSAAFNGVDVCPRKQGLCPSSTCTTNVNNAVPDPRHAVKCPWGLHRGKGNDPAHPAQSGSSRPCEDCSHPGTTPKKPPLRETRPVPDGCTPILLAFELCPKPTDRDGSLANNPQLTWLLEWKSVFPDLQKRLESRPAWRSPGAAWSQDGAGALTNNGGRWDDASAEGDEVNAEYLWGSSTTV 795
            E++  + A L DPEVGILLLTYTPRQPSTCTENMLRCAYRAGLRGTALWN+HGD W KGN+P SL APGGVGSHNHPL DPRHGS+AF GVD CPRKQ                                                                                                                                AWSQDG  ALT NGGRWDDASAEGDEV AEYLWGSS TV
Sbjct:  241 EAFFAMAAELLDPEVGILLLTYTPRQPSTCTENMLRCAYRAGLRGTALWNDHGDFWHKGNDPHSLPAPGGVGSHNHPLADPRHGSSAFKGVDSCPRKQ--------------------------------------------------------------------------------------------------------------------------------AWSQDGVVALTKNGGRWDDASAEGDEVTAEYLWGSSMTV 377
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1505.3817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KU26_9PHAE9.270e-16784.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKP4_ECTSI4.240e-5543.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1505contigEcto-sp13_S_contig1505:135..932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size798
Hectar predicted targeting categoryother localisation
Exons1
Cds size798
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462801.7353208-CDS-Ecto-sp13_S_contig1505:134..9321681462801.7353208-CDS-Ecto-sp13_S_contig1505:134..932Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1505 135..932 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1505.3817.1prot_Ecto-sp13_S_contig1505.3817.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1505 135..932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1505.3817.1

>prot_Ecto-sp13_S_contig1505.3817.1 ID=prot_Ecto-sp13_S_contig1505.3817.1|Name=mRNA_Ecto-sp13_S_contig1505.3817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=266bp
ESYSTLRAHLQDPEVGILLLTYTPRQPSTCTENMLRCAYRAGLRGTALWN
EHGDRWRKGNNPRSLQAPGGVGSHNHPLTDPRHGSAAFNGVDVCPRKQGL
CPSSTCTTNVNNAVPDPRHAVKCPWGLHRGKGNDPAHPAQSGSSRPCEDC
SHPGTTPKKPPLRETRPVPDGCTPILLAFELCPKPTDRDGSLANNPQLTW
LLEWKSVFPDLQKRLESRPAWRSPGAAWSQDGAGALTNNGGRWDDASAEG
DEVNAEYLWGSSTTV*
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mRNA from alignment at Ecto-sp13_S_contig1505:135..932+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1505.3817.1 ID=mRNA_Ecto-sp13_S_contig1505.3817.1|Name=mRNA_Ecto-sp13_S_contig1505.3817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=798bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1505:135..932+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAATCTTACTCAACTCTTCGCGCACACCTTCAGGACCCGGAAGTGGGCAT
TCTCCTGCTGACCTACACGCCCAGGCAGCCGTCCACATGCACGGAGAACA
TGCTACGTTGCGCGTATCGTGCCGGGCTGCGAGGAACTGCGCTGTGGAAC
GAGCACGGGGATCGCTGGCGCAAGGGAAACAATCCTCGCAGTCTACAAGC
ACCAGGTGGTGTCGGCAGTCACAACCATCCGTTGACAGACCCGCGACATG
GGAGCGCTGCCTTCAACGGGGTCGATGTTTGTCCGCGGAAGCAAGGTTTA
TGCCCGTCAAGCACCTGCACGACGAACGTCAACAACGCGGTACCGGATCC
AAGGCACGCCGTTAAGTGTCCGTGGGGACTTCACCGTGGGAAGGGCAATG
ATCCTGCCCACCCTGCGCAGAGCGGGAGCTCTAGGCCCTGCGAAGATTGC
TCTCATCCGGGAACTACGCCAAAGAAGCCGCCCCTCCGAGAGACCCGGCC
TGTACCCGACGGTTGCACGCCAATTCTGTTAGCTTTCGAGTTGTGCCCTA
AACCCACGGACCGGGATGGAAGCCTGGCCAACAACCCGCAGCTGACTTGG
TTGTTGGAGTGGAAATCCGTTTTTCCGGACCTCCAAAAACGATTGGAATC
TCGTCCCGCTTGGCGTTCTCCCGGGGCAGCGTGGAGCCAGGACGGTGCGG
GGGCACTGACAAATAATGGCGGCCGTTGGGACGATGCAAGTGCCGAAGGG
GACGAAGTCAACGCTGAGTATTTGTGGGGCTCCTCCACGACCGTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1505:135..932+

>mRNA_Ecto-sp13_S_contig1505.3817.1 ID=mRNA_Ecto-sp13_S_contig1505.3817.1|Name=mRNA_Ecto-sp13_S_contig1505.3817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=798bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1505:135..932+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAATCTTACTCAACTCTTCGCGCACACCTTCAGGACCCGGAAGTGGGCAT
TCTCCTGCTGACCTACACGCCCAGGCAGCCGTCCACATGCACGGAGAACA
TGCTACGTTGCGCGTATCGTGCCGGGCTGCGAGGAACTGCGCTGTGGAAC
GAGCACGGGGATCGCTGGCGCAAGGGAAACAATCCTCGCAGTCTACAAGC
ACCAGGTGGTGTCGGCAGTCACAACCATCCGTTGACAGACCCGCGACATG
GGAGCGCTGCCTTCAACGGGGTCGATGTTTGTCCGCGGAAGCAAGGTTTA
TGCCCGTCAAGCACCTGCACGACGAACGTCAACAACGCGGTACCGGATCC
AAGGCACGCCGTTAAGTGTCCGTGGGGACTTCACCGTGGGAAGGGCAATG
ATCCTGCCCACCCTGCGCAGAGCGGGAGCTCTAGGCCCTGCGAAGATTGC
TCTCATCCGGGAACTACGCCAAAGAAGCCGCCCCTCCGAGAGACCCGGCC
TGTACCCGACGGTTGCACGCCAATTCTGTTAGCTTTCGAGTTGTGCCCTA
AACCCACGGACCGGGATGGAAGCCTGGCCAACAACCCGCAGCTGACTTGG
TTGTTGGAGTGGAAATCCGTTTTTCCGGACCTCCAAAAACGATTGGAATC
TCGTCCCGCTTGGCGTTCTCCCGGGGCAGCGTGGAGCCAGGACGGTGCGG
GGGCACTGACAAATAATGGCGGCCGTTGGGACGATGCAAGTGCCGAAGGG
GACGAAGTCAACGCTGAGTATTTGTGGGGCTCCTCCACGACCGTGTAG
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