mRNA_Ecto-sp13_S_contig15047.3816.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15047.3816.1
Unique NamemRNA_Ecto-sp13_S_contig15047.3816.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15047.3816.1 vs. uniprot
Match: D7FX31_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX31_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 6.680e-76
Identity = 118/127 (92.91%), Postives = 123/127 (96.85%), Query Frame = 2 
Query:    2 VVVDGGLFALAAYFLATGVLAATHARNKRFADHRMWILRHVAMGYAAHVQRLLAALSWWAVPLVAPAKYTELSPEGALLRGDIFGGYFLVSIVLCVGLMEMWLRHTT-ASGTLRKERDQDKPAMKTA 379
            V VDGGLF LAAYFLATGVLAATHAR+KRFADHR+WILRHVAMGYAAHVQRLLAALSWWA+PLVAPAKYTELSPEGALLRGD+FGGYFLVSIVLCVGLMEMWLRHTT ASGTLR+ERDQDKPA KTA
Sbjct:  137 VAVDGGLFTLAAYFLATGVLAATHARSKRFADHRIWILRHVAMGYAAHVQRLLAALSWWAIPLVAPAKYTELSPEGALLRGDVFGGYFLVSIVLCVGLMEMWLRHTTTASGTLREERDQDKPATKTA 263
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BLAST of mRNA_Ecto-sp13_S_contig15047.3816.1 vs. uniprot
Match: A0A6H5J9S6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9S6_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 7.240e-34
Identity = 62/105 (59.05%), Postives = 76/105 (72.38%), Query Frame = 2 
Query:   17 GLFALAAYFLATGVLAATHARNKRFADHRMWILRHVAMGYAAHVQRLLAALSWWAVPLVAPAKYTELSPEGALLRGDIFGGYFLVSIVLCVGLMEMWLRHTTASG 331
            G    A YFL TG+LA  HARNKRFADHR+W+LRHVAMGY+ H+QRLL  L+WW  PL+ P  YT+L+ +G  LR  +F  YF+  +VL VG ME+WLRHT  SG
Sbjct:  174 GALLFAGYFLVTGLLAVHHARNKRFADHRVWMLRHVAMGYSVHMQRLLGHLTWWIFPLLMPG-YTDLTNDGMELRARVFALYFVAGVVLTVGPMEVWLRHTLPSG 277
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BLAST of mRNA_Ecto-sp13_S_contig15047.3816.1 vs. uniprot
Match: D7FX30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX30_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 3.200e-32
Identity = 60/100 (60.00%), Postives = 74/100 (74.00%), Query Frame = 2 
Query:   32 AAYFLATGVLAATHARNKRFADHRMWILRHVAMGYAAHVQRLLAALSWWAVPLVAPAKYTELSPEGALLRGDIFGGYFLVSIVLCVGLMEMWLRHTTASG 331
            A YFL TG+LA  HARNKRFADHR+W+LRHVAMGY+ H+QRLL  L+WW  PL+ P  YT+ +  G  LR ++F  YF V + L VG ME+WLRHT+ SG
Sbjct:  177 AGYFLVTGLLAVHHARNKRFADHRVWMLRHVAMGYSVHMQRLLGHLTWWMFPLLMPG-YTDFTNGGKELRANVFISYFFVGLALTVGPMEVWLRHTSPSG 275
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BLAST of mRNA_Ecto-sp13_S_contig15047.3816.1 vs. uniprot
Match: A0A6H5JEP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEP7_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.530e-9
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 2 
Query:  110 ILRHVAMGYAAHVQRLLAALSWWAVPLVAPAKYTELSPEGALLRGDIFGGYFL 268
            +LRHVAMGY+ H+QRLL  L+WW  PL+ P  YT+L+ +G  LR ++F   FL
Sbjct:    1 MLRHVAMGYSVHMQRLLGHLTWWIFPLLMPG-YTDLTKDGKELRANVFISCFL 52
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15047.3816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FX31_ECTSI6.680e-7692.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9S6_9PHAE7.240e-3459.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX30_ECTSI3.200e-3260.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEP7_9PHAE3.530e-952.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15047contigEcto-sp13_S_contig15047:762..2888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size805
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_004090.1
Cds size279
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462801.6582813-UTR-Ecto-sp13_S_contig15047:761..8631681462801.6582813-UTR-Ecto-sp13_S_contig15047:761..863Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15047 762..863 +
1681462801.6755803-UTR-Ecto-sp13_S_contig15047:1614..16151681462801.6755803-UTR-Ecto-sp13_S_contig15047:1614..1615Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15047 1615..1615 +
1681462801.7066348-UTR-Ecto-sp13_S_contig15047:2465..28881681462801.7066348-UTR-Ecto-sp13_S_contig15047:2465..2888Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15047 2466..2888 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462801.687857-CDS-Ecto-sp13_S_contig15047:1615..17721681462801.687857-CDS-Ecto-sp13_S_contig15047:1615..1772Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15047 1616..1772 +
1681462801.6980855-CDS-Ecto-sp13_S_contig15047:2343..24651681462801.6980855-CDS-Ecto-sp13_S_contig15047:2343..2465Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15047 2344..2465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15047.3816.1prot_Ecto-sp13_S_contig15047.3816.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15047 1616..2465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15047.3816.1

>prot_Ecto-sp13_S_contig15047.3816.1 ID=prot_Ecto-sp13_S_contig15047.3816.1|Name=mRNA_Ecto-sp13_S_contig15047.3816.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp
MWILRHVAMGYAAHVQRLLAALSWWAVPLVAPAKYTELSPEGALLRGDIF
GGYFLVSIVLCVGLMEMWLRHTTASGTLRKERDQDKPAMKTA*
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mRNA from alignment at Ecto-sp13_S_contig15047:762..2888+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15047.3816.1 ID=mRNA_Ecto-sp13_S_contig15047.3816.1|Name=mRNA_Ecto-sp13_S_contig15047.3816.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2127bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15047:762..2888+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTAGTCGTTGACGGCGGACTGTTCGCGCTCGCGGCCTACTTCCTAGCGA
CGGGCGTGCTCGCGGCGACTCACGCGAGAAATAAGCGCTTCGCCGACCAC
AGGTAAGGGCGCTGAAAACGATCCCGCCGTAAAACGAGAAACGCCCGGTC
AACCAGCCGGCAAATCGTGGGTACCTACATGGTGTAAGACATCGGACCAA
AATTGAGTGAGCCTGAACGCACCGGTGCGTTGGGGCGGAAAATGAGCAGG
GAGAAATGAAATGAGCATGCCAGATATCCAAATTTGAGTTTGCACTTTGA
ATTTGTTCGCTCTTTAGATCAGTGTGTGCTGGTGGTTTTGTGACAGCCAA
TTATTGACAGCTTCGTGTTCGCCAATCCCTCGCCCATTTCGATGGGGATG
AATGAGGTCAGAAGTGTGTCTTTATGCGCCGTAGCTTTTCTTGTGGCAAT
GTTATACTGTAAGCGTATACACCGCCCGGTAGCTGTGTCTCAGTCAGGCG
GAAAGTACGGCGGACGCCTTAACGCTTGTACATCCATGTGGCGAGTGAAG
ATGTATTTCTCTCCCTCTCGTTCCTGTCCGGCGAGATAATAGAAAACGGG
AATTGGAAAATACGACTCTTGAGGCACAATAGGACACACACAATCTCACG
TAAATTTCACACAACCCCCCGGCTCCTCCATTAGTTGTGTCGCTAATAAA
CGTACACGGTATGGGTTCTGTGACGCTGAGCAAGCCCCCCTCTCCCGTAT
TACGCCACACGGACATATCTTCGCAGATCAACGCGTTCAACGAAGCGATA
AGCTAGTGCCCCCCCCCCACCCTCCTCTACCACCAACCTACTTTTGATGA
CAGGATGTGGATCCTACGGCACGTCGCAATGGGCTACGCGGCCCACGTGC
AGCGTCTGCTGGCGGCCCTCAGTTGGTGGGCTGTCCCTCTCGTCGCTCCC
GCCAAGTACACCGAACTTTCTCCGGAGGGCGCCCTGCTACGCGGCGATAT
ATTCGGTGGTTGTAAGTCGCTGGATTTTGTTGCCGTTGTCGTCCTTCCAC
CGTGTTTCTACTGTGCTTATCTGAGTGGGGTATTGAAAGTGGTCATTGAG
AGCGGGGTTTGACGTTGCTCTTAGAAAAACAATTGGTGGTGCTGGGTGAG
TCTTGTGGTAGCTGAGTTGCCACTCTCTGTAGCACTCGTTGGATGTGCAC
TGCTGTTGCTGCTGGCACGGTAAAAGTGTTGCGGTAGTCCTGTTTCGTGT
TGTTCCAACTTTCCGCTTCATGTTGGCATTTGTCTCTCGTGCTTGGGAAA
CTTCCGGACACTGTCACGTTTATCGCGAGCGTTGGTGTGATCTTCTTGTC
TATGGTCGACGGTCTCCCGCGCAAATGGCAGTCCTCACTGGACCGGCAAT
GAGGAGTGCATGTCGTCCACTGCTGCGTCTTGCTTATTTCTGTCCTTGAG
TATCCAGGAGTGCCGCTGTTTTATTGTGAGGAGCGTGGAGGTGAGTAGCT
TCACTTGATTTTCCGGTGCCTGCTGACGCCCCTCGCCTCCCACCACCTGT
TCGTTGTCGTTACCATGGTGCACTCTGAACAGATTTTCTCGTTAGCATCG
TCTTGTGCGTGGGGTTGATGGAAATGTGGCTGCGACACACCACCGCCTCT
GGTACCTTGCGGAAGGAAAGGGATCAGGATAAACCTGCTATGAAGACCGC
ATGATGTGGAAACCTTTGTTTGGCACTATGTACTATCTTGCAATGTAGTA
GTATAATAGTTGGTGTGCTCCAGATGCTGTGCTAGAAAGAACAAGACGTC
GGGGGTGTCCGGTGGTAGACTATCCAGCGTGTAGTCGGTGGTTGTCAGCT
GCCACTATAGCTGATGGTCTGTACCTCAAAACAAACTGGTCGTCGTTTTT
GTTTTTCGGCGAGCACTGTTCTGAGCGGGACAAAAGAGAAACGGAAAAGT
GGCACACAGTTGCGTGATTGGTCACCCAACAGGCTGCGTCAGAAGCACCG
AGGTTGGACAGAGAGATATGACCATGTTCCGGTTTGACGCTGAACTATCG
GTGCTTGTTTCGACGGGCGGTGGAAGCGTTGGCCCGAGCAGTAAAGACGT
AACCCAAGAGCACCAGGTTGCCTGCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15047:762..2888+

>mRNA_Ecto-sp13_S_contig15047.3816.1 ID=mRNA_Ecto-sp13_S_contig15047.3816.1|Name=mRNA_Ecto-sp13_S_contig15047.3816.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15047:762..2888+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGATCCTACGGCACGTCGCAATGGGCTACGCGGCCCACGTGCAGCG
TCTGCTGGCGGCCCTCAGTTGGTGGGCTGTCCCTCTCGTCGCTCCCGCCA
AGTACACCGAACTTTCTCCGGAGGGCGCCCTGCTACGCGGCGATATATTC
GGTGGTTATTTTCTCGTTAGCATCGTCTTGTGCGTGGGGTTGATGGAAAT
GTGGCTGCGACACACCACCGCCTCTGGTACCTTGCGGAAGGAAAGGGATC
AGGATAAACCTGCTATGAAGACCGCATGA
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