mRNA_Ecto-sp13_S_contig15045.3814.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15045.3814.1
Unique NamemRNA_Ecto-sp13_S_contig15045.3814.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15045.3814.1 vs. uniprot
Match: A0A6H5K2M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M0_9PHAE)

HSP 1 Score: 419 bits (1078), Expect = 1.180e-128
Identity = 221/234 (94.44%), Postives = 225/234 (96.15%), Query Frame = 1 
Query:    1 GGSWHDPTSGGGGGRASDGFNVGGGWGLPEHHDLQAFVQWYSHDKQRDIRDGLRRRVSKTLAPLSKARDKAAGKQASKREKATRQAQKRELEASSAREKAATDALERCRAHAEKCSDRTTAAIDSWLAERRRRWEAGKTRCHELAPPVRSHVADGHAFDGGTNHVPAGEQAAAIPGAAVNAAAGLGGTQGGGMTPRDGKASSSWDWGRDGGEGASFEDFFETFAGGDFDEGAGL 702
            GGSWHDP+   GGGRASDGFNVGGGWGLPEHHDLQAFVQWYSHD+QRDIRDGLRRRVSKTL PLSKARDKAAGKQASKREKATRQAQKRELEASSAREKAATDALERCRAHAEKCSDRTTAAIDSWLAERRRRWEAGKTRCHELAPPVRSHVADG+AFDGGTNHVPAGEQAAAIPGAAVNAAAGLGGTQG G TPRDGKAS SW WGRDGGEGA FEDFFETFAGGD+DEGAGL
Sbjct: 1257 GGSWHDPS---GGGRASDGFNVGGGWGLPEHHDLQAFVQWYSHDEQRDIRDGLRRRVSKTLDPLSKARDKAAGKQASKREKATRQAQKRELEASSAREKAATDALERCRAHAEKCSDRTTAAIDSWLAERRRRWEAGKTRCHELAPPVRSHVADGNAFDGGTNHVPAGEQAAAIPGAAVNAAAGLGGTQGVGTTPRDGKASLSWAWGRDGGEGARFEDFFETFAGGDYDEGAGL 1487
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BLAST of mRNA_Ecto-sp13_S_contig15045.3814.1 vs. uniprot
Match: D8LQH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH1_ECTSI)

HSP 1 Score: 420 bits (1079), Expect = 1.170e-126
Identity = 219/233 (93.99%), Postives = 222/233 (95.28%), Query Frame = 1 
Query:    7 SWHDPTSGGGGGRASDGFNVGGGWGLPEHHDLQAFVQWYSHDKQRDIRDGLRRRVSKTLAPLSKARDKAAGKQASKREKATRQAQKRELEASSAREKAATDALERCRAHAEKCSDRTTAAIDSWLAERRRRWEAGKTRCHELAPPVRSHVADGHAFDGGTNHVPAGEQAAAIPGAAVNAAAGLGGTQGGGMTPRDGKASSSWDWGRDGGEGASFEDFFETFAGGDFDEGAGLP 705
            SWHDP+   GGGRASDGFNVGGGWGLPEHHDLQAFVQWYSHD+QRD RDGLRRRVSKTLAPLSKARDKAAGKQASKREKATRQAQKRELEASSAREKAATDALERCRAHAEKCSDRTTAAIDSWLAERRRRWEAGKTRCHELAPP RSHVADG+AFDGGTNHVPAGEQAAAIPGAA NAAAGLGGTQGGGM PRDGK S  WDWGRDGGEGASFEDFFETFAGGD DEGAGLP
Sbjct: 3510 SWHDPS---GGGRASDGFNVGGGWGLPEHHDLQAFVQWYSHDEQRDTRDGLRRRVSKTLAPLSKARDKAAGKQASKREKATRQAQKRELEASSAREKAATDALERCRAHAEKCSDRTTAAIDSWLAERRRRWEAGKTRCHELAPPARSHVADGNAFDGGTNHVPAGEQAAAIPGAAANAAAGLGGTQGGGMAPRDGKESLPWDWGRDGGEGASFEDFFETFAGGDDDEGAGLP 3739
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15045.3814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2M0_9PHAE1.180e-12894.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQH1_ECTSI1.170e-12693.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15045contigEcto-sp13_S_contig15045:1790..4267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score426.0
Seed ortholog evalue1.1e-116
Seed eggNOG ortholog2880.D8LQH1
Model size1686
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2C9IK@1,2QS1U@2759
Cds size708
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462801.5058875-CDS-Ecto-sp13_S_contig15045:1789..19081681462801.5058875-CDS-Ecto-sp13_S_contig15045:1789..1908Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15045 1790..1908 +
1681462801.516823-CDS-Ecto-sp13_S_contig15045:2127..23041681462801.516823-CDS-Ecto-sp13_S_contig15045:2127..2304Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15045 2128..2304 +
1681462801.52511-CDS-Ecto-sp13_S_contig15045:2879..32911681462801.52511-CDS-Ecto-sp13_S_contig15045:2879..3291Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15045 2880..3291 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462801.533723-UTR-Ecto-sp13_S_contig15045:3291..42671681462801.533723-UTR-Ecto-sp13_S_contig15045:3291..4267Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15045 3292..4267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15045.3814.1prot_Ecto-sp13_S_contig15045.3814.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15045 1790..3291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15045.3814.1

>prot_Ecto-sp13_S_contig15045.3814.1 ID=prot_Ecto-sp13_S_contig15045.3814.1|Name=mRNA_Ecto-sp13_S_contig15045.3814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=236bp
GGSWHDPTSGGGGGRASDGFNVGGGWGLPEHHDLQAFVQWYSHDKQRDIR
DGLRRRVSKTLAPLSKARDKAAGKQASKREKATRQAQKRELEASSAREKA
ATDALERCRAHAEKCSDRTTAAIDSWLAERRRRWEAGKTRCHELAPPVRS
HVADGHAFDGGTNHVPAGEQAAAIPGAAVNAAAGLGGTQGGGMTPRDGKA
SSSWDWGRDGGEGASFEDFFETFAGGDFDEGAGLP*
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mRNA from alignment at Ecto-sp13_S_contig15045:1790..4267+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15045.3814.1 ID=mRNA_Ecto-sp13_S_contig15045.3814.1|Name=mRNA_Ecto-sp13_S_contig15045.3814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2478bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15045:1790..4267+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGGTCTTGGCATGATCCAACAAGCGGCGGCGGCGGCGGACGTGCGAG
CGACGGGTTTAACGTCGGGGGCGGGTGGGGATTGCCGGAGCATCACGACT
TGCAGGCGTTCGTGCAGTGGTGAGTTGGTGATGTTCTCTCTTGTTTCTTT
CGCCACTTTATTGGTGTGATGTTGTTTTCGATGGCGTTGGTAAGAGTCGG
GTGGCGTTGTACACCAAGCCTGTAAGTATTATAAGTCGCCCCACCGGCGC
GTCGATCTCGAAGTGCGCGCCTCGCCATGTCACGAGAAACATCTATGCCC
CCTTCATCCACCTATCGTTTTTTCGCATTGCGCAACAGGTACAGCCACGA
CAAACAGCGGGATATAAGGGATGGGCTCCGGCGGCGAGTATCCAAGACGC
TCGCTCCGCTGTCTAAGGCACGTGATAAGGCAGCCGGCAAGCAGGCCTCA
AAGCGGGAGAAGGCCACGCGACAGGCGCAGAAGCGGGAGCTGGAGGCCTC
CTCGGCTAGGGAGAAGTGAGTAAATATGTAAATACTTATCAACCACTCGC
GTACTATGGAGAAAGGGTGCTTCTTGTAGAGGAAGCGCCTTCGAGACCTT
CGGTGCATGGTTTTTGGACTCGGCGTGTGTTTCTCGAGGCAACTACAAGT
GAGGCACCTACATGATAGCTCATTCAGTCGAAGAGCCATGGGGACCCACG
CGTGTAGAAAGACATGGGGTTGGAAGGGTTTCCACGAAAAACAGTTGACA
GGTATGCCACATCTTGTTTCGTTTCTTGATCTTTCATTTATTAGTTCTCA
GTAGGCGAGCTTGGATCAGGCAATTCAAAGAAGATGCCCATCGATGCACA
AACAACATTCATCGGGACCTGGTTCAACATGCTTCGGAAACAAACATGTC
ACCAAGTGAACATGACAAAAACCCCACCGCGAAATGAATCCTCTGTTCTT
CCTTGTATACCTCACCTGCTATTTTTGGTCTCCTTGAGCGTTGCAACAAA
AACCTTCAGCCCTCCCCTCCCCAACGTATCACTTTTTTAGCTACTTGAAA
CCTCCGGTCCTCCCTAACCTGCCGCGTTTTCTGTTTGCAGAGCTGCCACG
GACGCGCTCGAGCGCTGCCGGGCGCACGCCGAGAAGTGCTCGGACCGCAC
GACCGCGGCCATCGACTCTTGGCTCGCGGAACGGCGGCGGCGGTGGGAGG
CCGGGAAAACCCGCTGCCACGAGCTAGCGCCGCCGGTACGGAGCCACGTG
GCCGACGGACACGCCTTCGATGGCGGGACAAACCATGTCCCGGCAGGAGA
GCAGGCGGCAGCCATCCCGGGGGCAGCGGTTAACGCTGCCGCGGGGCTAG
GTGGAACGCAGGGCGGTGGGATGACGCCACGTGACGGGAAGGCGTCGTCG
TCATGGGACTGGGGAAGGGACGGAGGGGAAGGCGCGAGCTTCGAAGACTT
TTTCGAGACTTTCGCCGGCGGCGATTTTGACGAGGGGGCCGGGCTGCCTT
AGGCGCATGCTTGGAGTGCGTTGGCTTGTTGGCCATATAGAGATGTAATG
TGATGAGAAAAACACGGTGTGTTGTTCTTTGTATTTTTGTAGTATGCCGT
CTCCCTAGATGCAGAGGTGCGAGGGAAAAACCTCAAGTGGCATAATTCGC
ACGGGACATCATTCGCACGGGAGGAAAACTGCCGTGCAGAGTTTTCTGTA
CAAGTATTCCCCGCTGCTTTTGCGTGCCACACTACATATGCGTTGTTCTT
TCGAACTGCTTTGCTGTATATTGTGCCTCACCGGTGCGGGGTATGTTAGG
CACACTCGCGGTCTGCTTGCTGCAGGCAACACGTTCGCAGTTTTTTGTAG
ATCGCACAAGCGCATTTCGACGGCACCACGGTGCACGGCAAGGAAGGAGA
ACACGGCGCGATCAGTGAAATGCCTTTTGCCCGCGGTGCTGTTGATTGTT
TTCTGCGCTGCGTGATTTGTAGTAAGTGCTTCAGCATGGACGATAAAAAT
ACGAAATCCTATCCTTCTCGCACAATTGTATTTGTTCTGTTTCGCTTTGT
TTTGAGTATTTTTTAATGTTCAGTTTTATGGACGCAATTTACATGTGACT
TGCTCTTGTGTTTTTCCCGTTCGATTGATACTTATCTGGGTTGTTGTGGG
TATCACACCGATGGTAGTTTTATAGGTATTTTACCGAGACAAGACGTACT
TCGAACGTCGGGTATGGGTTGTGGAGGGTTGAGTAGCGATACGGGCTTCC
TGGGAGCAAAATGTGGCTTCCTGAGACGTTCGAAAACCTTCCCCGTTTAT
ATTTTTTCAATTGTACACATGAAGGGGGGAGTGGATTGTCGTGGGAAGGT
TGTGTCGGTTCTGTCTCGTCTGCTGCTAGGCACCGGTTTTAATTTTTCCA
TCAGCTTGGATCTATCTCAAGGCAACGTGCCAGTTTGGATCGGATTCCCG
GCCATGGTGTTCTATGTGGCAGCTTTCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15045:1790..4267+

>mRNA_Ecto-sp13_S_contig15045.3814.1 ID=mRNA_Ecto-sp13_S_contig15045.3814.1|Name=mRNA_Ecto-sp13_S_contig15045.3814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=708bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15045:1790..4267+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGGTCTTGGCATGATCCAACAAGCGGCGGCGGCGGCGGACGTGCGAG
CGACGGGTTTAACGTCGGGGGCGGGTGGGGATTGCCGGAGCATCACGACT
TGCAGGCGTTCGTGCAGTGGTACAGCCACGACAAACAGCGGGATATAAGG
GATGGGCTCCGGCGGCGAGTATCCAAGACGCTCGCTCCGCTGTCTAAGGC
ACGTGATAAGGCAGCCGGCAAGCAGGCCTCAAAGCGGGAGAAGGCCACGC
GACAGGCGCAGAAGCGGGAGCTGGAGGCCTCCTCGGCTAGGGAGAAAGCT
GCCACGGACGCGCTCGAGCGCTGCCGGGCGCACGCCGAGAAGTGCTCGGA
CCGCACGACCGCGGCCATCGACTCTTGGCTCGCGGAACGGCGGCGGCGGT
GGGAGGCCGGGAAAACCCGCTGCCACGAGCTAGCGCCGCCGGTACGGAGC
CACGTGGCCGACGGACACGCCTTCGATGGCGGGACAAACCATGTCCCGGC
AGGAGAGCAGGCGGCAGCCATCCCGGGGGCAGCGGTTAACGCTGCCGCGG
GGCTAGGTGGAACGCAGGGCGGTGGGATGACGCCACGTGACGGGAAGGCG
TCGTCGTCATGGGACTGGGGAAGGGACGGAGGGGAAGGCGCGAGCTTCGA
AGACTTTTTCGAGACTTTCGCCGGCGGCGATTTTGACGAGGGGGCCGGGC
TGCCTTAG
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