mRNA_Ecto-sp13_S_contig15045.3813.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15045.3813.1
Unique NamemRNA_Ecto-sp13_S_contig15045.3813.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15045.3813.1 vs. uniprot
Match: D8LQH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH1_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 5.020e-25
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:    1 ALPSLSGSSRWSLGSLSLLPTSTAPTSVSCMSDDAEGEQETLATQQTAPQSPQRNKAFFP 180
            ALPSLSGSSRWSLGSLSLLPTSTAPTSVSCMSDDAEGEQETLAT Q APQSPQRNKAFFP
Sbjct: 3273 ALPSLSGSSRWSLGSLSLLPTSTAPTSVSCMSDDAEGEQETLATHQKAPQSPQRNKAFFP 3332
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BLAST of mRNA_Ecto-sp13_S_contig15045.3813.1 vs. uniprot
Match: A0A6H5K2M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M0_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.100e-23
Identity = 56/60 (93.33%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 ALPSLSGSSRWSLGSLSLLPTSTAPTSVSCMSDDAEGEQETLATQQTAPQSPQRNKAFFP 180
            ALPSLSGSSRWSLGSLSLLPTSTAPTSVSC+SDDAEGEQETLAT QTAPQSPQRNK  FP
Sbjct: 1040 ALPSLSGSSRWSLGSLSLLPTSTAPTSVSCISDDAEGEQETLATHQTAPQSPQRNKIVFP 1099
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15045.3813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQH1_ECTSI5.020e-2596.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2M0_9PHAE1.100e-2393.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15045contigEcto-sp13_S_contig15045:750..1395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score112.5
Seed ortholog evalue1.3e-22
Seed eggNOG ortholog2880.D8LQH1
Model size342
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2C9IK@1,2QS1U@2759
Cds size339
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462801.455785-CDS-Ecto-sp13_S_contig15045:749..8751681462801.455785-CDS-Ecto-sp13_S_contig15045:749..875Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15045 750..875 +
1681462801.465976-CDS-Ecto-sp13_S_contig15045:1180..13931681462801.465976-CDS-Ecto-sp13_S_contig15045:1180..1393Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15045 1181..1393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15045.3813.1prot_Ecto-sp13_S_contig15045.3813.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15045 750..1393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15045.3813.1

>prot_Ecto-sp13_S_contig15045.3813.1 ID=prot_Ecto-sp13_S_contig15045.3813.1|Name=mRNA_Ecto-sp13_S_contig15045.3813.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
ALPSLSGSSRWSLGSLSLLPTSTAPTSVSCMSDDAEGEQETLATQQTAPQ
SPQRNKAFFPPTPPPFNSAAAGSWPPSAPGGSMSSYFAASSGAAGGAADG
AARNGGASGSGGA
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mRNA from alignment at Ecto-sp13_S_contig15045:750..1395+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15045.3813.1 ID=mRNA_Ecto-sp13_S_contig15045.3813.1|Name=mRNA_Ecto-sp13_S_contig15045.3813.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=646bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15045:750..1395+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTTGCCGTCGCTGTCGGGCAGCAGCCGCTGGTCCTTGGGATCGCTGAG
CCTCCTCCCTACGTCTACAGCACCGACGTCGGTGTCTTGCATGTCAGATG
ATGCCGAGGGTGAACAGGAAACGCTCGTAAGTCAAGCCGTGTGTTGCGTT
TGTGTACTTTGATTGTTGTAGTTCGTTTGTGATAGACTCGTTGTTGGGTT
TTGGGTTTAAGGCGGGGGATTAGGGTAAGTGTCCTCACCCTCAAATATTT
ATTTGTCTTTCTTGGTACTTTTTTATTCTGTTGGCTCTTCGTTGGTTGTT
CGTTTTAAATATTGACGTCGGTTTGCTGGAATTGCTCACGACTTGTCAGC
GACAGCAATGCAGCACCCCTTTGCCCGTCCCCTCACACCCTCCCATTCAC
CTGCCCCCCCCCTCATCCGGCCGCAATCCAGGCAACGCAGCAGACGGCTC
CGCAGTCCCCTCAGCGCAACAAGGCCTTCTTCCCTCCGACGCCCCCCCCC
TTCAACAGCGCCGCTGCGGGCTCGTGGCCACCTTCTGCACCCGGGGGCAG
CATGTCTTCCTACTTCGCCGCCTCTTCGGGGGCGGCGGGCGGTGCCGCCG
ACGGCGCCGCCAGGAATGGCGGTGCCAGCGGGAGCGGGGGCGCCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15045:750..1395+

>mRNA_Ecto-sp13_S_contig15045.3813.1 ID=mRNA_Ecto-sp13_S_contig15045.3813.1|Name=mRNA_Ecto-sp13_S_contig15045.3813.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15045:750..1395+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTTGCCGTCGCTGTCGGGCAGCAGCCGCTGGTCCTTGGGATCGCTGAG
CCTCCTCCCTACGTCTACAGCACCGACGTCGGTGTCTTGCATGTCAGATG
ATGCCGAGGGTGAACAGGAAACGCTCGCAACGCAGCAGACGGCTCCGCAG
TCCCCTCAGCGCAACAAGGCCTTCTTCCCTCCGACGCCCCCCCCCTTCAA
CAGCGCCGCTGCGGGCTCGTGGCCACCTTCTGCACCCGGGGGCAGCATGT
CTTCCTACTTCGCCGCCTCTTCGGGGGCGGCGGGCGGTGCCGCCGACGGC
GCCGCCAGGAATGGCGGTGCCAGCGGGAGCGGGGGCGCC
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