mRNA_Ecto-sp13_S_contig15032.3804.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15032.3804.1
Unique NamemRNA_Ecto-sp13_S_contig15032.3804.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15032.3804.1 vs. uniprot
Match: D7FHP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHP9_ECTSI)

HSP 1 Score: 361 bits (926), Expect = 5.210e-123
Identity = 201/213 (94.37%), Postives = 209/213 (98.12%), Query Frame = 1 
Query:   70 MRKALSEIEVVDVFKVKIDDGTFFGGQDLVEWLCSRLKQELAFSAEVRKELEGERLASSREFDRLSENEKRLMNELREKRSELETAERRLLDTTDALHSQKQLRMKEMLVTQGAAKEISGLQSEVSRLTNRINLQADVTAAVEKECEALRSTVRTGREVRDVEDLNFRKTLADTIKREEGMVRLKRRLHAAETERRESEARVSRLQRETDRMR 708
            MRKALSEIEV+DVFKVKIDDGTFFGGQDLVEWLCSRLKQELAFSAEVRKEL+GERLASSREFDRLSENEKRL NELR+K+SELETAERRLLDTT+ALHSQKQLRMKEMLVTQGAAKEI+ LQSEVSRLTNRINLQADVTAAVEKECEALRSTVRTGREVRDVED+NFRKTLA+TIKREEGMVRLKRRLHAAE ERRESEARVSRLQRE DRMR
Sbjct:    1 MRKALSEIEVIDVFKVKIDDGTFFGGQDLVEWLCSRLKQELAFSAEVRKELQGERLASSREFDRLSENEKRLKNELRDKQSELETAERRLLDTTEALHSQKQLRMKEMLVTQGAAKEINSLQSEVSRLTNRINLQADVTAAVEKECEALRSTVRTGREVRDVEDVNFRKTLAETIKREEGMVRLKRRLHAAEAERRESEARVSRLQREMDRMR 213
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15032.3804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHP9_ECTSI5.210e-12394.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15032contigEcto-sp13_S_contig15032:1499..4271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size708
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_006260.1
Cds size708
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15032.3804.1prot_Ecto-sp13_S_contig15032.3804.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15032 1499..4271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462800.8331134-CDS-Ecto-sp13_S_contig15032:1498..16121681462800.8331134-CDS-Ecto-sp13_S_contig15032:1498..1612Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15032 1499..1612 +
1681462800.841742-CDS-Ecto-sp13_S_contig15032:1923..20691681462800.841742-CDS-Ecto-sp13_S_contig15032:1923..2069Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15032 1924..2069 +
1681462800.8496685-CDS-Ecto-sp13_S_contig15032:2665..28101681462800.8496685-CDS-Ecto-sp13_S_contig15032:2665..2810Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15032 2666..2810 +
1681462800.8576972-CDS-Ecto-sp13_S_contig15032:3158..32781681462800.8576972-CDS-Ecto-sp13_S_contig15032:3158..3278Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15032 3159..3278 +
1681462800.8681018-CDS-Ecto-sp13_S_contig15032:3435..35551681462800.8681018-CDS-Ecto-sp13_S_contig15032:3435..3555Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15032 3436..3555 +
1681462800.876871-CDS-Ecto-sp13_S_contig15032:4208..42711681462800.876871-CDS-Ecto-sp13_S_contig15032:4208..4271Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15032 4209..4271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15032.3804.1

>prot_Ecto-sp13_S_contig15032.3804.1 ID=prot_Ecto-sp13_S_contig15032.3804.1|Name=mRNA_Ecto-sp13_S_contig15032.3804.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=236bp
GDTSAERVSVSTSSPLEADDTAGMRKALSEIEVVDVFKVKIDDGTFFGGQ
DLVEWLCSRLKQELAFSAEVRKELEGERLASSREFDRLSENEKRLMNELR
EKRSELETAERRLLDTTDALHSQKQLRMKEMLVTQGAAKEISGLQSEVSR
LTNRINLQADVTAAVEKECEALRSTVRTGREVRDVEDLNFRKTLADTIKR
EEGMVRLKRRLHAAETERRESEARVSRLQRETDRMR
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mRNA from alignment at Ecto-sp13_S_contig15032:1499..4271+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15032.3804.1 ID=mRNA_Ecto-sp13_S_contig15032.3804.1|Name=mRNA_Ecto-sp13_S_contig15032.3804.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2773bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15032:1499..4271+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGATACATCAGCGGAGAGGGTGTCCGTTTCCACATCTTCACCGCTTGA
GGCAGATGACACTGCAGGGATGAGGAAAGCCCTGTCCGAGATAGAAGTGG
TCGATGTTTTCAAGGTGCTCGAAACTCGATGCAGAGCACACCTACAGTAC
CTGTCGCCATGGTGGACGAAAATTAGGATCCTCGTAGCCCTCTGACTCAG
GCTGCAGGTTCGAATCTCTCTGGAGCGCAAAATCGTGGAAAGCGTAAGAG
CCGTGAGTAACACAAACTGAGGGAAGGCAGTGCTACAGACCGTCGAAGTT
CACTCTGATTCCACGGACCAAACCAAAACAGAACATCGGCCCTAACAGCC
AGATCAAGGTACGGACAAAGTGCAACAACCCTCTTAACACCCTTCTGCGC
GACGCAACACTCTTTTCCCCGGAAGGTGAAAATCGATGACGGCACGTTCT
TCGGGGGCCAGGACCTTGTGGAGTGGCTTTGCTCCAGGTTGAAGCAAGAG
CTGGCTTTTTCAGCCGAGGTCCGCAAGGAGCTAGAAGGGGAGCGTCTCGC
CTCCAGCCGGGAGTTCGACAGGTATTTCAGTGGAACATCCTGTGAAACAG
TTCTTGTCGCTGTCGTTTTCATGCTTGACGATGCTGCTTCTACTGCCCTG
CTTGTTGTTGTTGCTGACGCCGTTGTCGCTGTTGCAGTCGTACTCTTCCA
AGTTTATTCTTGATGCTGTATCACTCCGAGCCGTTACGTCCTGACGAATC
GGCTCCTGAGAAAGGGGCGGCCAAGAGCTTTGAAGTTGAGCGCATATGAC
AGTTATTGAAACGAACCAAAACACCAAGAATATCCCTAAGGTGTGTCGAA
ACCTCGGAAAGCTCCATTCGACCAACACCACCCTTCAAGTTGGGGGTTTC
GACCGGGAACACACGACCCGTGATGCACGCGTATGCATGGATCAAACAAA
CGAATTAGGCTTGAGGCGTTTTGTGCCGACTGAACGTACGTGTGCGACTA
ACCTTCAAAGACAGGCAAATGTTGAGAAAACCGTGTACCTTTTGGGAGAT
CTGCAGCGAATGGAACAGAGGAACCATCGCTGGCGTTGAACGCACACTTT
AGACGCGATGGTTGTGTCGTCACATCCCCGCGGCCGCCTCCCTACTACCG
TCCCACAATTGTAACAGGTTGTCCGAGAACGAGAAAAGGCTGATGAACGA
GTTGAGAGAGAAGCGGTCAGAACTCGAGACGGCGGAGCGGCGCCTGTTGG
ACACTACTGATGCGCTTCACTCTCAGAAGCAGCTGCGCATGAAGGAGATG
CTTGTAACCCAGGTGACGCAGGACGACACACACTACTGGCCGTAAAGGTG
CAGTTGGTCTGCGTGCCAAAAACGAGGCTCTATTCTGAAACGCTGATCTT
TGTTGTTGCTATTGACGAATCAGGCCGATTGACCGGGTTTCATCTTCATG
CTTTTTTCGTTGCTGATTGGTCCTGTTCTGAGTTCGGATTCTCAAGCTCG
CATTGATTGGTGAGTCGAGTACCCTGCAATGTGAATGTGCGCGTGCGATA
CCCATCGCGAAGAATCGTACCGTGGTGCAGTACAATATAATCTTGTATCG
TTTTCCGTCGCTTTCCCATACCACTCTTGATTTTTTTGCCCTGCCGAACC
CAACCCCCAGGGAGCCGCGAAAGAAATCAGCGGCCTACAGTCCGAGGTTT
CGAGACTCACGAATCGAATCAACCTGCAGGCGGACGTTACCGCGGCCGTG
GAGAAAGAATGCGAAGCGCTTCGATCCACGGTACAGTGACGGAGCGTTGG
ACCAAGTGGTTGATGTACGTTCAACCTAAAAGAAACGCTATTGTTCACAG
GGCTGGGAATGCGTCCACGACAGACAGAGAGACGACGACGACGGCTTAAC
TTGGCCACTGCTGTTAAACTGTTGGTGGCGTTGAAAGGTGCGGACCGGAC
GGGAAGTGCGCGACGTCGAGGATTTAAACTTCCGCAAGACGCTGGCGGAT
ACGATTAAGCGGGAGGAGGGCATGGTGCGGCTCAAGAGGCGACTTCACGC
GGCCGAGGTAAGCTCAACTGGCTCTCGCTGTTGCTGTCTTACTGACTGTC
GTCGGTACTGCCGCGGCAAAAAGCTGCCTAAGCCTACACGCTGTACCTCT
GAGGTGTGTAGGGATACAACAGGCGGGCCAACCCGTGCTCTGTGCCTCTG
AGCTAGGAAGGCACGAGGCACCCCGGACAAGCAACTTTTGGGGCCACGGG
AAAGTTAAGATACAATGGTCATTTCAAAGATCCAGCAGTTGCGGCTAGAG
GAAGCCGCCGGAAGACCGGACGTCGCTAAGGTCTTCCAGCATACCTGTTC
GTCGACATTGCAGTGACATGTCTGAGTAGCGGGTAGGCATCGATGACGAC
CAACAACGGCTGGTGGGGGGGGAGTTGTGTGGCTTCGAATCGAGGGTTTG
TAGTGTCGGAGTCAACAACGAGGCGGTTCAATGTTGACATCTCCATTCTA
TTTAACCCAACCACCAGGGATGAGAGTTCTCTGATTGTGCGACATGTGTG
CTTACACCAATCCCCTTGAGCGCGGGTCTCAAACCCCGCGCCCTTGCTAT
GACGATTTCCTCGAAAATGTCTCAGTCAAGATTGTATCCGCGCTCAAAAT
TTACGTGTGTCGAGATTTTGCTGCCCTCTCCTCGGTGCAAAATGCCGTTC
GTTTCCGCAGACCGAGAGGAGAGAATCGGAAGCTCGAGTGTCTCGCTTGC
AACGGGAGACGGACCGCATGCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15032:1499..4271+

>mRNA_Ecto-sp13_S_contig15032.3804.1 ID=mRNA_Ecto-sp13_S_contig15032.3804.1|Name=mRNA_Ecto-sp13_S_contig15032.3804.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=708bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15032:1499..4271+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGATACATCAGCGGAGAGGGTGTCCGTTTCCACATCTTCACCGCTTGA
GGCAGATGACACTGCAGGGATGAGGAAAGCCCTGTCCGAGATAGAAGTGG
TCGATGTTTTCAAGGTGAAAATCGATGACGGCACGTTCTTCGGGGGCCAG
GACCTTGTGGAGTGGCTTTGCTCCAGGTTGAAGCAAGAGCTGGCTTTTTC
AGCCGAGGTCCGCAAGGAGCTAGAAGGGGAGCGTCTCGCCTCCAGCCGGG
AGTTCGACAGGTTGTCCGAGAACGAGAAAAGGCTGATGAACGAGTTGAGA
GAGAAGCGGTCAGAACTCGAGACGGCGGAGCGGCGCCTGTTGGACACTAC
TGATGCGCTTCACTCTCAGAAGCAGCTGCGCATGAAGGAGATGCTTGTAA
CCCAGGGAGCCGCGAAAGAAATCAGCGGCCTACAGTCCGAGGTTTCGAGA
CTCACGAATCGAATCAACCTGCAGGCGGACGTTACCGCGGCCGTGGAGAA
AGAATGCGAAGCGCTTCGATCCACGGTGCGGACCGGACGGGAAGTGCGCG
ACGTCGAGGATTTAAACTTCCGCAAGACGCTGGCGGATACGATTAAGCGG
GAGGAGGGCATGGTGCGGCTCAAGAGGCGACTTCACGCGGCCGAGACCGA
GAGGAGAGAATCGGAAGCTCGAGTGTCTCGCTTGCAACGGGAGACGGACC
GCATGCGC
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