mRNA_Ecto-sp13_S_contig15016.3796.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15016.3796.1
Unique NamemRNA_Ecto-sp13_S_contig15016.3796.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15016.3796.1 vs. uniprot
Match: D8LN51_ECTSI (Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN51_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 8.580e-66
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 
Query:    4 VIMMDECRRRLRKVGRKGVEGSSGDFYFASLDGNLVLDGGPMGSEARFANHSCSPNCLMQKWSVLGETRVVLVAARDISVGEELTYNYQADTLEGFVERQKCLCGEPQC 330
            VIMMDECRRRLRKVGRKGVEGSSGDFYFASLDGNLVLDGGPMG EARFANHSCSPNCLMQKWSVLGETRVVLVAARDISVGEELTYNYQADTL GFVERQKCLCGEPQC
Sbjct:  369 VIMMDECRRRLRKVGRKGVEGSSGDFYFASLDGNLVLDGGPMGGEARFANHSCSPNCLMQKWSVLGETRVVLVAARDISVGEELTYNYQADTLGGFVERQKCLCGEPQC 477
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BLAST of mRNA_Ecto-sp13_S_contig15016.3796.1 vs. uniprot
Match: A0A835Z6U8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6U8_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.410e-45
Identity = 74/109 (67.89%), Postives = 92/109 (84.40%), Query Frame = 1 
Query:    4 VIMMDECRRRLRKVGRKGVEGSSGDFYFASLDGNLVLDGGPMGSEARFANHSCSPNCLMQKWSVLGETRVVLVAARDISVGEELTYNYQADTLEGFVERQKCLCGEPQC 330
            VI +DEC+RRL+++G++G     GDFYFASLDG L+LD GPMG+EARFANHSC+PNC +QKWSV+GETRVV+ A R +  GEELTYNY+ADTL+G V RQ+CLCG P+C
Sbjct:  252 VISVDECKRRLKQLGKRG---KRGDFYFASLDGQLILDAGPMGNEARFANHSCAPNCELQKWSVMGETRVVMAAKRTLQPGEELTYNYRADTLDGCVTRQRCLCGAPRC 357
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BLAST of mRNA_Ecto-sp13_S_contig15016.3796.1 vs. uniprot
Match: A0A6H5JSL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL4_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 2.660e-38
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:  127 MGSEARFANHSCSPNCLMQKWSVLGETRVVLVAARDISVGEELTYNYQADTLEGFVERQKCLCGEPQC 330
            MGSEARFANHSCSPNCLMQKWSVLGETRVVLVAARDISVGEELTYNYQADTLEGFVERQKCLCGEPQC
Sbjct:    1 MGSEARFANHSCSPNCLMQKWSVLGETRVVLVAARDISVGEELTYNYQADTLEGFVERQKCLCGEPQC 68
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BLAST of mRNA_Ecto-sp13_S_contig15016.3796.1 vs. uniprot
Match: W7TZX2_9STRA (Histone-lysine n-h3 lysine-36 and h4 lysine-20 specific n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZX2_9STRA)

HSP 1 Score: 131 bits (329), Expect = 6.250e-37
Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = 1 
Query:    4 VIMMDECRRRLRKVGRKGVEGSSGDFYFASLDGNLVLDGGPMGSEARFANHSCSPNCLMQKWSVLGETRVVLVAARDISVGEELTYNYQADTLEGFVERQKCLCGEPQC 330
            V+ M+E + R+R +       +  D+YFA+L+G LVLD GPMGSEARFANHSC+PNC++QKW   GE  ++LVAAR +  GEE+TYNYQ DTL G   +Q C CG   C
Sbjct:   42 VVTMEEAQTRMRSMS------AGQDYYFAALEGELVLDAGPMGSEARFANHSCAPNCVLQKWRAGGEAHILLVAARRLGAGEEVTYNYQVDTLAGMFGKQACRCGAKNC 144
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BLAST of mRNA_Ecto-sp13_S_contig15016.3796.1 vs. uniprot
Match: A0A7R9U2M8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2M8_9STRA)

HSP 1 Score: 126 bits (316), Expect = 8.620e-34
Identity = 63/109 (57.80%), Postives = 71/109 (65.14%), Query Frame = 1 
Query:    4 VIMMDECRRRLRKVGRKGVEGSSGDFYFASLDGNLVLDGGPMGSEARFANHSCSPNCLMQKWSVLGETRVVLVAARDISVGEELTYNYQADTLEGFVERQKCLCGEPQC 330
            VI  +ECR RL      G    + D+YFASL G  VLD GPMGS+ARFANHSCSPNC +Q W+VLGE RV LVA RDI   E L YNY++D L G V  Q C CG   C
Sbjct:   92 VITTEECRTRL------GTYTENQDYYFASLTGPYVLDAGPMGSKARFANHSCSPNCALQVWNVLGEPRVALVAIRDIRANEHLCYNYRSDDLNGEVSLQSCRCGSLNC 194
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BLAST of mRNA_Ecto-sp13_S_contig15016.3796.1 vs. uniprot
Match: A0A4D9DD50_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DD50_9STRA)

HSP 1 Score: 130 bits (327), Expect = 6.550e-33
Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = 1 
Query:    4 VIMMDECRRRLRKVGRKGVEGSSGDFYFASLDGNLVLDGGPMGSEARFANHSCSPNCLMQKWSVLGETRVVLVAARDISVGEELTYNYQADTLEGFVERQKCLCGEPQC 330
            V+ M+E + R+R +       +  D+YFA+L+G LVLD GPMGSEARFANHSC+PNC++QKW   GE  ++LVAAR +  GEE+TYNYQ DTL G   +Q C CG   C
Sbjct:  266 VVTMEEAQTRMRSMS------AGQDYYFAALEGELVLDAGPMGSEARFANHSCAPNCVLQKWRAGGEAHILLVAARRMGAGEEVTYNYQVDTLAGMFGQQACRCGAKNC 368
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BLAST of mRNA_Ecto-sp13_S_contig15016.3796.1 vs. uniprot
Match: A0A7S3M4K6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M4K6_9STRA)

HSP 1 Score: 111 bits (277), Expect = 3.440e-27
Identity = 52/89 (58.43%), Postives = 64/89 (71.91%), Query Frame = 1 
Query:   76 DFYFASLDGNLVLDGGPMGSEARFANHSCSPNCLMQKWSVLGETRVVLVAARDISVGEELTYNYQA--DTLEGF--VERQKCLCGEPQC 330
            DFYF  LD  L+LD   MGS ARFANHSC+P+CL+QKW+V GE R+VLVA RD+  G E+TYNY    D+ EG   ++RQKC+CG   C
Sbjct:   38 DFYFMGLDNGLMLDAKTMGSAARFANHSCAPSCLLQKWTVRGECRLVLVAKRDLPAGAEITYNYHYFDDSFEGVRGMKRQKCMCGAKHC 126
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BLAST of mRNA_Ecto-sp13_S_contig15016.3796.1 vs. uniprot
Match: A0A812VNP2_SYMMI (Ash1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VNP2_SYMMI)

HSP 1 Score: 109 bits (272), Expect = 2.230e-26
Identity = 54/89 (60.67%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:   79 FYFASLDGNLVLDGGPMGSEARFANHSCSPNCLMQKWSVLGETRVVLVAARDISVGEELTYNYQ-----ADTLEGFVERQKCLCGEPQC 330
            FYFA LDG LVLD    GS ARFANHSC PNC +QKW   GE RVVLVA R I  G ELTYNYQ      D +    +RQKC CG P C
Sbjct:   10 FYFAHLDGGLVLDAAVYGSTARFANHSCEPNCTLQKWITNGEPRVVLVALRTIKSGSELTYNYQYYQDGLDDIARRFKRQKCACGSPVC 98
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BLAST of mRNA_Ecto-sp13_S_contig15016.3796.1 vs. uniprot
Match: UPI000C782B09 (uncharacterized protein LOC111697599 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C782B09)

HSP 1 Score: 107 bits (266), Expect = 1.130e-24
Identity = 50/109 (45.87%), Postives = 73/109 (66.97%), Query Frame = 1 
Query:    4 VIMMDECRRRLRKVGRKGVEGSSGDFYFASLDGNLVLDGGPMGSEARFANHSCSPNCLMQKWSVLGETRVVLVAARDISVGEELTYNYQADTLEGFVERQKCLCGEPQC 330
            +I M+E R R++       +    ++Y+ ++D N ++D GP G+ ARF NHSC PNC+ QKWSV G+TRV L   +D+ VGEELT+NYQ +++ G V++ KCLCG   C
Sbjct:  510 LITMEEYRNRMKM----NQDSKEENYYYLTIDNNRMIDAGPKGNSARFMNHSCDPNCITQKWSVNGDTRVGLFTIKDVKVGEELTFNYQLESV-GDVKK-KCLCGAANC 612
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BLAST of mRNA_Ecto-sp13_S_contig15016.3796.1 vs. uniprot
Match: A0A822FUY1_9NEOB ((mimic poison frog) hypothetical protein n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822FUY1_9NEOB)

HSP 1 Score: 98.6 bits (244), Expect = 1.440e-24
Identity = 44/84 (52.38%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:   79 FYFASLDGNLVLDGGPMGSEARFANHSCSPNCLMQKWSVLGETRVVLVAARDISVGEELTYNYQADTLEGFVERQKCLCGEPQC 330
            FY  ++D + ++D GP G+ +RF NHSC PNC  QKW+V G+TRV L+A RDI  GEELT+NY  D L    E+  C CG P C
Sbjct:    3 FYMLTIDKDRIIDAGPKGNFSRFMNHSCQPNCETQKWTVNGDTRVGLLAVRDIPAGEELTFNYNLDCLGN--EKTVCRCGAPNC 84
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15016.3796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN51_ECTSI8.580e-6698.17Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A835Z6U8_9STRA1.410e-4567.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JSL4_9PHAE2.660e-38100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TZX2_9STRA6.250e-3754.13Histone-lysine n-h3 lysine-36 and h4 lysine-20 spe... [more]
A0A7R9U2M8_9STRA8.620e-3457.80Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A4D9DD50_9STRA6.550e-3354.13Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3M4K6_9STRA3.440e-2758.43Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A812VNP2_SYMMI2.230e-2660.67Ash1 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
UPI000C782B091.130e-2445.87uncharacterized protein LOC111697599 n=1 Tax=Euryt... [more]
A0A822FUY1_9NEOB1.440e-2452.38(mimic poison frog) hypothetical protein n=1 Tax=R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15016contigEcto-sp13_S_contig15016:370..2008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score221.5
Seed ortholog evalue1.9e-55
Seed eggNOG ortholog2880.D8LN51
Model size330
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K06101,ko:K07117,ko:K11423,ko:K11424,ko:K11728
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko05202,map00310,map05202
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000803,GO:0000805,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0007530,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009892,GO:0009987,GO:0010452,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016278,GO:0016279,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018193,GO:0018205,GO:0018992,GO:0019222,GO:0019538,GO:0022414,GO:0030849,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0034968,GO:0036211,GO:0040029,GO:0042054,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046975,GO:0048519,GO:0048856,GO:0050789,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0140096,GO:1901564
Exons3
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1081@2759,KOG1632@1,KOG1632@2759
EC2.1.1.43
Cds size321
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462800.2991235-CDS-Ecto-sp13_S_contig15016:369..4501681462800.2991235-CDS-Ecto-sp13_S_contig15016:369..450Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15016 370..450 -
1681462800.3115823-CDS-Ecto-sp13_S_contig15016:905..10331681462800.3115823-CDS-Ecto-sp13_S_contig15016:905..1033Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15016 906..1033 -
1681462800.3264523-CDS-Ecto-sp13_S_contig15016:1887..19991681462800.3264523-CDS-Ecto-sp13_S_contig15016:1887..1999Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15016 1888..1999 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462800.3391962-UTR-Ecto-sp13_S_contig15016:1999..20081681462800.3391962-UTR-Ecto-sp13_S_contig15016:1999..2008Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15016 2000..2008 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15016.3796.1prot_Ecto-sp13_S_contig15016.3796.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15016 370..1999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15016.3796.1

>prot_Ecto-sp13_S_contig15016.3796.1 ID=prot_Ecto-sp13_S_contig15016.3796.1|Name=mRNA_Ecto-sp13_S_contig15016.3796.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
MMDECRRRLRKVGRKGVEGSSGDFYFASLDGNLVLDGGPMGSEARFANHS
CSPNCLMQKWSVLGETRVVLVAARDISVGEELTYNYQADTLEGFVERQKC
LCGEPQC
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mRNA from alignment at Ecto-sp13_S_contig15016:370..2008-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15016.3796.1 ID=mRNA_Ecto-sp13_S_contig15016.3796.1|Name=mRNA_Ecto-sp13_S_contig15016.3796.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15016:370..2008- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTAATCATGATGGACGAGTGCCGCAGACGCCTCCGCAAGGTGGGACG
CAAGGGCGTCGAGGGTTCCAGCGGCGACTTCTACTTCGCCTCCCTGGATG
GAAACCTCGTGCTCGACGGTGGTGAGGGAAGCGGCAGCCGCTATAAGTCT
TGTCGACAGAGAATAAAAATAGAGCGGGAAGCGCGTAAGTTTGAGACGGA
ACAAAAAGAAAGGATAGCCGAGCTTTTCCCGATGAATGTGCTCACGTACG
CCACTCACATCTCCTTTGTGTGCTTGCTCTCTAGATTTGCATGCATGCTG
TCTTTCACTGGGATACATTTTTTTTTCCGGCAAGTTGGATACACAACGTT
AACAAGAACTGTGAGTGTAGTTCTTTCAAAAAACTCTGCGTACAGTAGTA
CCTAAGAATATAATCCATCGGGCAGAGAGGCAGGGAAGCGTTCAAAGGTC
AGTCGCACTTATACACGCAGGAGTCTACCTTATGTCGACAGCGATTTCGT
TCTACGGTATATAGCACAACTCTTTCCTCGGAAATCCTGTTTTCCCAGAT
TGTTTCCGGACGAGTAAAGATGTTCTTTCCTGCTCGTGCTCCGTCGGCGT
GGCGTCGTGACTCCCTCTTCCCGGCGCCTTGGATGGGCTCTTCCACGAAT
TACCGCAGAATCCGCAGAAACCTTTGCGACATTTTTTTCACTCGATTTTT
TTTCTCTGTAACTATGTATGCGTGTGCAGTTTCATGCCCACGCGTTCAAC
CCCGCGCCATGCTTTCGTCTTGTTTTCGCCTCATCCTGCACTGCTTCGTG
AGGGGTACGCGCACGAGAGTTTGCCTGCCACCGTTGGTTGCCCGGCTTCT
CTCCTTGACCCTTTGCGCTCCGCGTTGCGTTCCGTGAGCTGCTGTGCCAC
CGGCCACCCGTGGGCACGCACGCTGACCGACCCATGTGGTTGGTTGGTTA
CAATCGACTGCGTTTTATTGTGCAGGCCCCATGGGCAGCGAGGCTCGTTT
CGCGAACCACAGCTGCTCCCCGAATTGCCTGATGCAGAAGTGGAGCGTGC
TGGGCGAGACCCGGGTAGTCCTCGTTGCCGCTCGTGACATCTCGGTCGGC
GAGGTGGGAAGATGAGAATTACATTTTTTTTTTTTTATCCCCCCTTTTTT
GTTTCCTCCGCGACGTTTTCTTTTGGCATTAAAACACCTGAATGAATCTA
TACTTTTCGTTCACGTAGTCATCACTGGCTCTTGAGTGAGATGTGGGAAC
CGCTTGTAGAAGGTCGGCCTGGTGTCATGCCGTGCCCTTTCGGAGGGTGA
AGTGTAGACAAACGGAGACATCGCCACTCGCGAGGGGGGTGCCATGCTGC
TACGTTGGTGGAATTTTTTTTCGTTTTTAGTTCCGCGCGCACGCGGTCGG
CGAGATAATTTTGCTCGTGCTCGGTTGGCGACCGTTTATGCCGCCTAACT
TTGCGCGTTGGTCCGCCCCGTCTGATGCTGTTGCTCGTGCTGCTGCTGCT
GCTGCTGCTGTTGCTGCTGCTGTTGCTGCTGCTGTTGCTGCTACTGTTGC
TGCTGCAGGAGCTGACGTACAACTACCAAGCGGACACCCTGGAGGGCTTC
GTGGAGAGACAGAAGTGCCTGTGCGGAGAGCCCCAGTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15016:370..2008-

>mRNA_Ecto-sp13_S_contig15016.3796.1 ID=mRNA_Ecto-sp13_S_contig15016.3796.1|Name=mRNA_Ecto-sp13_S_contig15016.3796.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15016:370..2008- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGACGAGTGCCGCAGACGCCTCCGCAAGGTGGGACGCAAGGGCGT
CGAGGGTTCCAGCGGCGACTTCTACTTCGCCTCCCTGGATGGAAACCTCG
TGCTCGACGGTGGCCCCATGGGCAGCGAGGCTCGTTTCGCGAACCACAGC
TGCTCCCCGAATTGCCTGATGCAGAAGTGGAGCGTGCTGGGCGAGACCCG
GGTAGTCCTCGTTGCCGCTCGTGACATCTCGGTCGGCGAGGAGCTGACGT
ACAACTACCAAGCGGACACCCTGGAGGGCTTCGTGGAGAGACAGAAGTGC
CTGTGCGGAGAGCCCCAGTGC
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