mRNA_Ecto-sp13_S_contig15010.3794.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15010.3794.1
Unique NamemRNA_Ecto-sp13_S_contig15010.3794.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15010.3794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15010contigEcto-sp13_S_contig15010:277..1561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size386
Hectar predicted targeting categoryother localisation
Exons2
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462800.191297-CDS-Ecto-sp13_S_contig15010:276..5441681462800.191297-CDS-Ecto-sp13_S_contig15010:276..544Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15010 277..544 +
1681462800.2010653-CDS-Ecto-sp13_S_contig15010:1444..15601681462800.2010653-CDS-Ecto-sp13_S_contig15010:1444..1560Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15010 1445..1560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15010.3794.1prot_Ecto-sp13_S_contig15010.3794.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15010 277..1560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15010.3794.1

>prot_Ecto-sp13_S_contig15010.3794.1 ID=prot_Ecto-sp13_S_contig15010.3794.1|Name=mRNA_Ecto-sp13_S_contig15010.3794.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
WNNQRELPRRAFRCRPMNTGHNAFCFAPCREARVSYVCRIAEVQHHLHTD
DHSLSFLPPPPPPPGREYCCDDRKTRAPSDARCGYRTCPAAAAAAADGEC
SGRLPVAPPAATGVYVSSRPIGYSSFWV
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mRNA from alignment at Ecto-sp13_S_contig15010:277..1561+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15010.3794.1 ID=mRNA_Ecto-sp13_S_contig15010.3794.1|Name=mRNA_Ecto-sp13_S_contig15010.3794.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15010:277..1561+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGAACAACCAGCGCGAATTGCCCCGCCGTGCCTTTCGCTGCAGGCCGAT
GAATACCGGCCACAATGCATTCTGCTTTGCGCCTTGCAGGGAAGCGAGGG
TTTCCTATGTATGTCGTATTGCCGAAGTACAGCACCATTTACACACCGAC
GACCATTCCCTGTCGTTCTTGCCCCCCCCCCCTCCGCCTCCAGGCCGTGA
ATACTGCTGTGATGATCGAAAGACCCGAGCCCCCTCCGACGCACGTTGCG
GTTATCGTACCTGTCCAGGTAAGTTTTTTTTTATTTTTTTCTGTCGACAC
ATGGGTACGGTGCCAGAGATAAAGAAGCGTTCTGGTCCATGGCGTGGTGA
AGAGCGGCTGTTGCAAGCGAGTGATCGTTCAGGTTGTTGGTGCTAAGCTA
TCTGGACACTCGGTCGTACATGTTGAAACTGCCAGCGAGGGTACGCACAC
GCACACACATAGCAACGAATTTGGGCAGGGTGAAGTGTGATGATGACGTT
CAAACGACCACCGTAGTGAACAAGTACGGTATCGAATCGGAGATACGGTG
GAATTACCTTTCGCCGGGGGCTGTTGCTTTGTTGGGAAGCTTCTTGTCGT
GTATGTTTGTTTGGAGGCCTGACTTAAGAGGGTGCTGGTGGAGGTGGTGC
GACGAGGGAATCTGTACGGCGGTGGCAGCGGCGGTCTACCGTGGTCGTAC
GTACTCGAAGATGAAGCATTGAATTATCGTTGGTGGCCAGGAGAAAAACA
ATCGTGTTTAACTTCGAGAGACTTGGCAAGTGTCAGTTGTAAGCGGACGT
GCTTGCTTCTTGCCGACTTTCCGCGTATTTGGTGACCTCCCTAAAACTCG
AAAGTTATAAATACTTGAACAAATGTAGTAACCAGCAAGTTGAGAGCTGC
TGCTCCAATCCGGCAGAGGGGGGTAGATACACCGCCTGTGTCGTGCCGTC
ATGGACTCCGAGGGTTACGTGCAGCACCGCCGGTCTTTGACGTAGACAAT
GCACCATTTTATTCGTATGCATTTACACTTCATGGCGGATAAAATGTGGC
ACACCTGCTTGAGTCATTTCGTCGTCGCCGTTGATTGGCCCACCCAACCG
TCTCCTGATTCTCTCTTCTTCTCCACTCCCCGTGTGCGGACTGATTGTTT
GTGGCGATGACGGGGCAGCAGCAGCAGCAGCAGCAGCAGATGGGGAATGC
TCAGGGCGGCTTCCCGTCGCTCCCCCAGCAGCAACAGGTGTGTATGTATC
TTCCCGACCGATTGGTTATTCTTCGTTTTGGGTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15010:277..1561+

>mRNA_Ecto-sp13_S_contig15010.3794.1 ID=mRNA_Ecto-sp13_S_contig15010.3794.1|Name=mRNA_Ecto-sp13_S_contig15010.3794.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15010:277..1561+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGAACAACCAGCGCGAATTGCCCCGCCGTGCCTTTCGCTGCAGGCCGAT
GAATACCGGCCACAATGCATTCTGCTTTGCGCCTTGCAGGGAAGCGAGGG
TTTCCTATGTATGTCGTATTGCCGAAGTACAGCACCATTTACACACCGAC
GACCATTCCCTGTCGTTCTTGCCCCCCCCCCCTCCGCCTCCAGGCCGTGA
ATACTGCTGTGATGATCGAAAGACCCGAGCCCCCTCCGACGCACGTTGCG
GTTATCGTACCTGTCCAGCAGCAGCAGCAGCAGCAGCAGATGGGGAATGC
TCAGGGCGGCTTCCCGTCGCTCCCCCAGCAGCAACAGGTGTGTATGTATC
TTCCCGACCGATTGGTTATTCTTCGTTTTGGGTT
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