mRNA_Ecto-sp13_S_contig15009.3791.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15009.3791.1
Unique NamemRNA_Ecto-sp13_S_contig15009.3791.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15009.3791.1 vs. uniprot
Match: A0A6H5LQ87_9PHAE (LETM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ87_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 6.560e-18
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 1
Query:    1 TSVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKV 126
            T VGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKV
Sbjct:  721 TPVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKV 762          
BLAST of mRNA_Ecto-sp13_S_contig15009.3791.1 vs. uniprot
Match: D8LP03_ECTSI (LETM1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP03_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.280e-17
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    7 VGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKV 126
            VGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKV
Sbjct:  540 VGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKV 579          
BLAST of mRNA_Ecto-sp13_S_contig15009.3791.1 vs. uniprot
Match: A0A836CA55_9STRA (LETM1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA55_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.580e-13
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 1
Query:    7 VGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEK 120
            VGHVLVFSFIQR+FP+FFPST+T+RRQNLLKMY EVEK
Sbjct:  232 VGHVLVFSFIQRYFPDFFPSTFTERRQNLLKMYEEVEK 269          
BLAST of mRNA_Ecto-sp13_S_contig15009.3791.1 vs. uniprot
Match: A0A7S1NU99_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NU99_9EUGL)

HSP 1 Score: 71.2 bits (173), Expect = 2.650e-13
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 1
Query:    7 VGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKK 123
            +GHVLVFSFIQRFFP FFPS+++DRRQNLLKMY E+EKK
Sbjct:  693 IGHVLVFSFIQRFFPEFFPSSFSDRRQNLLKMYEEIEKK 731          
BLAST of mRNA_Ecto-sp13_S_contig15009.3791.1 vs. uniprot
Match: A0A7S3UWA8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWA8_HETAK)

HSP 1 Score: 67.8 bits (164), Expect = 4.160e-12
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = 1
Query:    1 TSVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKK 123
            T VGHVL+FSFIQRFFP+FFP+ YTD+RQNLLK+Y  +E+K
Sbjct:  315 TPVGHVLIFSFIQRFFPDFFPTPYTDQRQNLLKLYETIEEK 355          
BLAST of mRNA_Ecto-sp13_S_contig15009.3791.1 vs. uniprot
Match: A0A7S1R4U4_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1R4U4_ALECA)

HSP 1 Score: 63.5 bits (153), Expect = 8.330e-12
Identity = 26/38 (68.42%), Postives = 36/38 (94.74%), Query Frame = 1
Query:    1 TSVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEV 114
            T +GHVLVFSFIQ+FFP+FFPST+T+RRQN++K+Y ++
Sbjct:   69 TPIGHVLVFSFIQKFFPDFFPSTFTERRQNVVKIYQDI 106          
BLAST of mRNA_Ecto-sp13_S_contig15009.3791.1 vs. uniprot
Match: A0A4D9D1V1_9STRA (LETM1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V1_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.120e-11
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 1
Query:    1 TSVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKK 123
            T +GHVLVFS IQR FP+FFPST+T+RRQNL KMY E++KK
Sbjct:  674 TPIGHVLVFSLIQRIFPDFFPSTFTERRQNLSKMYDEIDKK 714          
BLAST of mRNA_Ecto-sp13_S_contig15009.3791.1 vs. uniprot
Match: A0A7S2X822_9EUKA (Hypothetical protein n=2 Tax=Lotharella TaxID=74819 RepID=A0A7S2X822_9EUKA)

HSP 1 Score: 64.3 bits (155), Expect = 1.350e-11
Identity = 28/42 (66.67%), Postives = 38/42 (90.48%), Query Frame = 1
Query:    1 TSVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKV 126
            T VGHVLVFS IQ+FFP+F+PS YT+RRQNL+++Y E+E+K+
Sbjct:  132 TPVGHVLVFSAIQKFFPDFYPSPYTERRQNLVRLYQEIEQKL 173          
BLAST of mRNA_Ecto-sp13_S_contig15009.3791.1 vs. uniprot
Match: A0A7S0U8H3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U8H3_HEMAN)

HSP 1 Score: 65.9 bits (159), Expect = 2.100e-11
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 1
Query:    7 VGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVE 117
            VGHVLVFSFIQRFFP+FFPS YTDRRQ LL+MY  VE
Sbjct:  468 VGHVLVFSFIQRFFPDFFPSPYTDRRQKLLRMYQAVE 504          
BLAST of mRNA_Ecto-sp13_S_contig15009.3791.1 vs. uniprot
Match: A0A7S2XTH3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XTH3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.550e-11
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 1
Query:    7 VGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVE 117
            VGHVLVFSFIQRFFP+FFPS++TDRRQNL +MY  +E
Sbjct:  269 VGHVLVFSFIQRFFPDFFPSSFTDRRQNLARMYESIE 305          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15009.3791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LQ87_9PHAE6.560e-1897.62LETM1 domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LP03_ECTSI2.280e-17100.00LETM1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CA55_9STRA1.580e-1386.84LETM1 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7S1NU99_9EUGL2.650e-1382.05Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S3UWA8_HETAK4.160e-1273.17Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1R4U4_ALECA8.330e-1268.42Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A4D9D1V1_9STRA1.120e-1173.17LETM1 domain-containing protein n=1 Tax=Nannochlor... [more]
A0A7S2X822_9EUKA1.350e-1166.67Hypothetical protein n=2 Tax=Lotharella TaxID=7481... [more]
A0A7S0U8H3_HEMAN2.100e-1183.78Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S2XTH3_9STRA2.550e-1178.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15009contigEcto-sp13_S_contig15009:3640..3771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score83.6
Seed ortholog evalue2.6e-14
Seed eggNOG ortholog2880.D8LP03
Model size132
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.calcium export from the mitochondrion
EggNOG OGsKOG1043@1,KOG1043@2759
Cds size132
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462799.9154458-CDS-Ecto-sp13_S_contig15009:3639..37711681462799.9154458-CDS-Ecto-sp13_S_contig15009:3639..3771Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15009 3640..3771 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15009.3791.1prot_Ecto-sp13_S_contig15009.3791.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15009 3640..3771 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15009.3791.1

>prot_Ecto-sp13_S_contig15009.3791.1 ID=prot_Ecto-sp13_S_contig15009.3791.1|Name=mRNA_Ecto-sp13_S_contig15009.3791.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=44bp
TSVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKVHS
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mRNA from alignment at Ecto-sp13_S_contig15009:3640..3771-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15009.3791.1 ID=mRNA_Ecto-sp13_S_contig15009.3791.1|Name=mRNA_Ecto-sp13_S_contig15009.3791.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15009:3640..3771- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCTCAGTCGGGCACGTGTTAGTGTTCTCGTTCATCCAGAGGTTCTTCCC CAACTTCTTCCCGTCCACCTACACGGACCGCAGACAGAACCTGCTCAAGA TGTACACCGAGGTCGAGAAAAAGGTACATTCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15009:3640..3771-

>mRNA_Ecto-sp13_S_contig15009.3791.1 ID=mRNA_Ecto-sp13_S_contig15009.3791.1|Name=mRNA_Ecto-sp13_S_contig15009.3791.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15009:3640..3771- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCTCAGTCGGGCACGTGTTAGTGTTCTCGTTCATCCAGAGGTTCTTCCC
CAACTTCTTCCCGTCCACCTACACGGACCGCAGACAGAACCTGCTCAAGA
TGTACACCGAGGTCGAGAAAAAGGTACATTCA
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