mRNA_Ecto-sp13_S_contig1499.3776.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1499.3776.1
Unique NamemRNA_Ecto-sp13_S_contig1499.3776.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1499.3776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1499contigEcto-sp13_S_contig1499:10201..11500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size292
Hectar predicted targeting categoryother localisation
Exons2
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462798.5572278-CDS-Ecto-sp13_S_contig1499:10200..102861681462798.5572278-CDS-Ecto-sp13_S_contig1499:10200..10286Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1499 10201..10286 -
1681462798.5659213-CDS-Ecto-sp13_S_contig1499:11295..115001681462798.5659213-CDS-Ecto-sp13_S_contig1499:11295..11500Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1499 11296..11500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1499.3776.1prot_Ecto-sp13_S_contig1499.3776.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1499 10201..11500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1499.3776.1

>prot_Ecto-sp13_S_contig1499.3776.1 ID=prot_Ecto-sp13_S_contig1499.3776.1|Name=mRNA_Ecto-sp13_S_contig1499.3776.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
CGLLAESSTTPARSLSKQQTQLEPWFFSMVPSALISGVDGRLLSTTSSEI
YDEDDVWTPLQSWDFLHLGVTCSYQVLVLVVVVHLWICRKWPPYVPR
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mRNA from alignment at Ecto-sp13_S_contig1499:10201..11500-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1499.3776.1 ID=mRNA_Ecto-sp13_S_contig1499.3776.1|Name=mRNA_Ecto-sp13_S_contig1499.3776.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1499:10201..11500- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTGGTCTCCTCGCAGAAAGCTCAACGACACCCGCCCGAAGTCTCTCCAA
ACAGCAGACGCAGCTCGAACCGTGGTTTTTCAGCATGGTGCCAAGCGCAT
TGATCTCGGGTGTCGATGGCCGTTTGCTTTCAACCACCAGCAGCGAAATC
TATGACGAAGATGATGTATGGACACCCCTCCAAAGCTGGGACTTCTTGCA
TTTAGGTGCGTGCCTCTGTTGTTACGATTTGCTCGCTGCGTCGGACTGGA
ACATTGTGAAACTACCTAGCGCAGATTTCCGCTCGGCTACTCACACAACA
GCAGCAGCAGTGTCCGCGCGTTTCACTATTTCCGAAGGGCGCCGATATAT
CGCATTTCTCATACAGCGGGAACGTCGCGCCAGATCGCCGCAGCACATCC
ATCTCATATAGCGGGAAGAAAGGTGGTGAGTATGAGGCATAGTCTGCATA
TAGTCCACCTCGTGGTCTCTCGGACACAGCTTTCTACGCGAAAAAGTTCC
GATTTTTGGCGGATGGATGGTTGAGTTTTCCTGTGCGACCCTCCTCGCCG
GCCTCTCCCTTTCGCTCCACTACGGGGGGATGCAGGATATCACGCGACGA
CCGAAACTTGGGTTTCTCTTGTTTCTGCAGTACGCGCCTTGCCTGTTGAG
CGGTCCATTTTCTCCACGCTTGGGTGATAACATGCGGGAGTGTCTCTTCG
ATTCTTGATGTTGCATATGTGTGTCTCATGGACTAGCCTACTGATCCATT
CTGCCACTACCGACCTCACCAGGATGCGGTTTCCAGACGGTGTCTTGGCC
AACAATGATTCCACCCACGCACACACACACGAAGCAGCCTTTATAGACGC
GTGCAGTTTTAATCTATATGGCTTGATCTACTGTAGTGTTCCAAACGTAC
GTAAGCTTGTTCAGTAGGTGGCCCGGTATACTGCCGGTCGAGTAATGCCG
GTTGCCCGCGATGCATATTGCCGGTGAAATCGGCTGGCACAACTTCAAGC
CGGTACAAAAGAAATGCCGGTACCGGCATGTAGAACACGTACATACCAGC
ATGCACCAGGATGCGGTCGTATCGCGATTTTGTGAGGGTAGCCACAACAA
GATCTGACAAGCACGGGTACGCAGACGCTCGATCGCTAATGACCAACGCC
GAAAGCAGGAGGGAATCCCCCTCCCCCCTCGCCGCCCGCCGCCCGCCGCC
CATCCGCATGACAGGCGTGACGTGTTCCTACCAGGTGCTGGTGCTTGTGG
TGGTGGTCCACCTCTGGATTTGTAGAAAATGGCCCCCATATGTTCCCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1499:10201..11500-

>mRNA_Ecto-sp13_S_contig1499.3776.1 ID=mRNA_Ecto-sp13_S_contig1499.3776.1|Name=mRNA_Ecto-sp13_S_contig1499.3776.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1499:10201..11500- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTGGTCTCCTCGCAGAAAGCTCAACGACACCCGCCCGAAGTCTCTCCAA
ACAGCAGACGCAGCTCGAACCGTGGTTTTTCAGCATGGTGCCAAGCGCAT
TGATCTCGGGTGTCGATGGCCGTTTGCTTTCAACCACCAGCAGCGAAATC
TATGACGAAGATGATGTATGGACACCCCTCCAAAGCTGGGACTTCTTGCA
TTTAGGCGTGACGTGTTCCTACCAGGTGCTGGTGCTTGTGGTGGTGGTCC
ACCTCTGGATTTGTAGAAAATGGCCCCCATATGTTCCCAGG
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