mRNA_Ecto-sp13_S_contig14989.3774.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14989.3774.1
Unique NamemRNA_Ecto-sp13_S_contig14989.3774.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14989.3774.1 vs. uniprot
Match: D7G0H6_ECTSI (Protein disulfide isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0H6_ECTSI)

HSP 1 Score: 420 bits (1079), Expect = 5.250e-144
Identity = 234/359 (65.18%), Postives = 242/359 (67.41%), Query Frame = 1 
Query:    1 IEDQRLPIRLARMDVSSRGGMHAWKALGLKRLPAVKVFVGHNPDEPLLYAGHLDANGIAAHLAMLERDRRRVLEHQKKYFSPATTRLGDSSRNGGDGSGASDLGISKLELDTSGVILVSLAVRCNTAADDVSGRLYSRTMSLGDRFRAAIGQQGASLVLFAPEPSPKARRMIKEIRKAAPILALRDPPTKVILVDLQNADGGGGDDGSRGTAVLYEDGSRRRQGSSRGGDPALPPGTEDILAKRQLAADARVTFGDGPELRIFLDGRLWVEGGVFRGLPTTDGILQHMDWVADEAGLRPQRERATMKATQRGGRSTFDGRQVITTSVATADSSINVSSEACPASSRCVNHAGGVTCQDE 1077
            IEDQRLPIRLARMDVSSRGGM+AWKA GLKRLP VKVFVG+NPDEPL YAGHLDANGIAAHLAMLER                                                                                                    ARR+IKEIRKAAPILALRDPPTKVILVD QNA GGGGDDGSRGTAVL+EDGSRRRQGSSR GDPALP GTEDILAKRQLAAD  VTFG+GPELRIFLDGRLWVEGGVFRGLPTTDGILQHMDWVADEAGL PQ ERATMKATQ GGRSTFDG Q++ T VATADS +NVSSEACPASSRC NHAGGVTCQDE
Sbjct:   78 IEDQRLPIRLARMDVSSRGGMNAWKAFGLKRLPTVKVFVGNNPDEPLPYAGHLDANGIAAHLAMLER----------------------------------------------------------------------------------------------------ARRLIKEIRKAAPILALRDPPTKVILVDFQNASGGGGDDGSRGTAVLHEDGSRRRQGSSRSGDPALPAGTEDILAKRQLAADIGVTFGEGPELRIFLDGRLWVEGGVFRGLPTTDGILQHMDWVADEAGLLPQHERATMKATQGGGRSTFDGHQIMATPVATADSLVNVSSEACPASSRCTNHAGGVTCQDE 336
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14989.3774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0H6_ECTSI5.250e-14465.18Protein disulfide isomerase n=1 Tax=Ectocarpus sil... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14989contigEcto-sp13_S_contig14989:909..4283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1083
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionprotein disulfide isomerase
Ec32 orthologEc-19_003370.1
Cds size1083
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14989.3774.1prot_Ecto-sp13_S_contig14989.3774.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14989 909..4283 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462798.3761253-CDS-Ecto-sp13_S_contig14989:908..11091681462798.3761253-CDS-Ecto-sp13_S_contig14989:908..1109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14989 909..1109 -
1681462798.3881495-CDS-Ecto-sp13_S_contig14989:1858..19581681462798.3881495-CDS-Ecto-sp13_S_contig14989:1858..1958Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14989 1859..1958 -
1681462798.3991885-CDS-Ecto-sp13_S_contig14989:2433..27251681462798.3991885-CDS-Ecto-sp13_S_contig14989:2433..2725Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14989 2434..2725 -
1681462798.407449-CDS-Ecto-sp13_S_contig14989:3149..34381681462798.407449-CDS-Ecto-sp13_S_contig14989:3149..3438Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14989 3150..3438 -
1681462798.417542-CDS-Ecto-sp13_S_contig14989:3713..38061681462798.417542-CDS-Ecto-sp13_S_contig14989:3713..3806Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14989 3714..3806 -
1681462798.4288185-CDS-Ecto-sp13_S_contig14989:4175..42831681462798.4288185-CDS-Ecto-sp13_S_contig14989:4175..4283Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14989 4176..4283 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14989.3774.1

>prot_Ecto-sp13_S_contig14989.3774.1 ID=prot_Ecto-sp13_S_contig14989.3774.1|Name=mRNA_Ecto-sp13_S_contig14989.3774.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=361bp
IEDQRLPIRLARMDVSSRGGMHAWKALGLKRLPAVKVFVGHNPDEPLLYA
GHLDANGIAAHLAMLERDRRRVLEHQKKYFSPATTRLGDSSRNGGDGSGA
SDLGISKLELDTSGVILVSLAVRCNTAADDVSGRLYSRTMSLGDRFRAAI
GQQGASLVLFAPEPSPKARRMIKEIRKAAPILALRDPPTKVILVDLQNAD
GGGGDDGSRGTAVLYEDGSRRRQGSSRGGDPALPPGTEDILAKRQLAADA
RVTFGDGPELRIFLDGRLWVEGGVFRGLPTTDGILQHMDWVADEAGLRPQ
RERATMKATQRGGRSTFDGRQVITTSVATADSSINVSSEACPASSRCVNH
AGGVTCQDEK*
back to top

mRNA from alignment at Ecto-sp13_S_contig14989:909..4283-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14989.3774.1 ID=mRNA_Ecto-sp13_S_contig14989.3774.1|Name=mRNA_Ecto-sp13_S_contig14989.3774.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14989:909..4283- (Ectocarpus species13 EcNAP12_S_4_19m)
ATAGAGGACCAGCGTTTACCCATCCGACTCGCGAGGATGGACGTTTCGAG
CAGGGGAGGAATGCACGCCTGGAAGGCACTCGGGTTGAAGAGGCTGCCTG
CGGTTAAGGTGATCAGTGTACTTTGTAAGAGTCAAGCGATCGGCAGTCCA
GACGGTCCTGCGATGGTCTGCTGCTGGGATACCTAGCCTCGCTCACATGG
CTGCCCTCCGATTCTGCCGGATAGTCAAACCTTTCTTGGCGTGGAAAAAA
AGCACGGGCGTTTTCAACCGGGGACGTTTTCGACACTCCGGAGCCGTAGC
TGTACAGCGCCTCCCCCTTGCTGTCCTTTTGAGGCTACATTGTTTGGAGA
TGGTGACGATTCCTCCGACGGTTTTGTCCCCTCCGTTCCTCGCCGATCTC
TATGTGGGCGGGGCTACATGACCAAGCGCTCAAATACATCGTTACCTATG
CTCTTGGACTTTGACGAACTTCCTCAGGTGTTTGTAGGACACAATCCAGA
TGAGCCTCTACTGTACGCCGGCCACCTCGATGCTAACGGCATCGCAGCGC
ATCTGGCGATGTTGGAAAGGGTGAGTTTTCAGACATTTTTTCTTTGCGTT
GATCACCTCACGTGTTTGGCGTATGACGCCAACAGCCAAGCTTTCTTTCA
GGGACTATTATAATAGAGACTGCGGTAGAGTGCGGTCTGCTTGGTCTGCA
GCATCATTGATTGAAACGATCCTTAGCAGATCTGGGACATTGTCCCTCTG
TGGTGACGTCGTAGAGCCGCAGCCGCATGCCCACCAACTTCACTCTCTTT
CCTTGTCGACCATGGTTATATTAACACCCATGAAACGTGACGAAGGACCG
GAGGCGCGTTCTCGAACACCAAAAGAAGTATTTCAGCCCCGCGACAACAA
GACTTGGCGATTCCAGCAGGAATGGCGGTGACGGAAGTGGCGCGTCCGAC
CTCGGGATCTCAAAGCTTGAGCTGGACACGTCGGGCGTGATCCTCGTGTC
GCTTGCGGTCAGATGCAATACTGCCGCTGATGATGTGTCCGGGCGCTTAT
ATTCGCGGACGATGTCGCTCGGCGATAGGTTTCGGGCGGCTATCGGACAG
CAGGGGGCTTCTTTGGTACTCTTCGCGCCGGAACGTGAGCCGAGGTCGTC
TCGGATGTGTGGTACCACGCTCGCACGCTGTCGATGATACCATTCCCCTT
TCCGCGGCTGGGAATTTCTCGACCAGATGAAAAATGTGCACACGAGGCGC
CCGCTTTGTGGTTATCGCCAGGCACCATCTTGCGTGCTCACTGATCTAGA
GGAACGATTCACGCATTGATCAGGAAGACCGGTCCATGTGGTATCGTAGC
GAGCAGCTACGTGAGAAATGTTAAATTTTATCCACGTCGGGTGGGAACTT
TTCTGTGCAATTAGGTATCTTACCTCCCTAATCCTGCTCAAAGTTCATAC
GATCCAAGCCTCTACAGAGCCAAGAGCGCTCTCTTCTCCTGGAACGCGTA
ACCTTGCCTCCCCCACCCATCTCCCACCCCCCCCGACCGCCGTATCGCGC
CGCGAAAGCTTCTCCGAAGGCCCGGCGCATGATAAAGGAGATCCGGAAGG
CGGCGCCAATCCTGGCCTTGCGGGACCCCCCGACGAAGGTCATACTCGTC
GACCTCCAAAACGCCGACGGTGGCGGCGGTGATGATGGCAGTCGCGGAAC
AGCAGTGCTCTACGAAGACGGGAGTCGAAGAAGGCAGGGTAGCAGCCGTG
GTGGCGATCCAGCTCTTCCACCCGGTACGGAGGACATCTTGGCCAAGCGG
CAGCTTGCGGCGGACGCCAGGGTCACCTTCGGAGACGGGCCGGAGCTTAG
GTACCGGTCGCTGTACAACAATAGGGAGGCGCTGCTCTATTTAGCGGATA
CTTTGTTGCATACTTTCGCCGTATCTCCAGCAACGTTGCATGGTGTTGCT
GTGTCCAGCGGTCTCGGTGTGTGTAGAACCGTCTTGGATCCTCACTGTCA
GTGAATTTCATTTTTCCACTACTGACTACCGACCCCTGACCATCCGTACT
AAGGACGCGGGTATTGGAATAAGTCATGAAAAAACGTGTTACGCGCGGAG
TCTATTGAACGCCCCCGGGTAATGCATGTATCTCGATCATGATGAACGGC
CCTAAGCTTATGCGTGTATCCCGATCGTGATCGTCGAGGATTTCCGACCA
CTGTGCAATTCAGAGTACGCCGCCTCGACATGCACCCCTAGGTCAACAAG
TCAGGAATAGTTGTACCTCATACCAACACGTTCAGCACCCGCCTGGGTTG
TCGACCCCTGCCGCTGTGTCTGTAGGATATTTCTTGACGGGAGGCTTTGG
GTCGAGGGAGGCGTGTTTCGGGGTTTGCCTACCACCGACGGGATCTTGCA
ACACATGGACTGGGTTGCGGACGAGGTAAATAAGGTTTGGACCATGAAAT
GAAGTATCTACTGCTGTAAGTTCTCTGTCATCGAGGAGGTACAGGCCAGA
AAAACATGTCAAGTCGTGACCAAAGACTCTTCTTGTCAGGCTGTGAACGC
CGTGCGTTTTCTCACCGGCCTCGTACTACATCCACCGACCTCATGCCGTG
CAGCCGCGGTGATTCGTCGCGAGAAGATGGGCAAACACGTTTTCTTCATC
CCGCCTAGGGTGCTGAGAGTACTCCAGTCTCGCGGCTTTCTTGTGTTTGA
TCCACTCTCGGCATCCAACACGAAGGCCAAAAGATAGGATCGCACCAGGC
GCGAGTACTTGTGTGCTGGCCGCAGTGACCAAAACATGCGACCTAGAGAA
CGCTTCCCCTCGCGAGACCGCACCTTGTACAGGTCTCCCGGAAATCAACA
GTTATTACATCATTCAAAAAGCGAACGCAGAGAGAGTTGGAGACACGCAT
GCACAGCTGACGACTATACCCCCCTCAGGGGGCTGTGTCGGGGGGCTGTG
CCACAAGTAGTCGTTATCAGTACCGGTACGATGGTTTTTCGTGAAACATT
CATGATGATTTGCGCTTCCGAAACCAAGGCCACCAACACACGAGTGTAGC
CCACGACCTCGACAACAAAACCGACGCTCTCTCATGCATGCTTCCTCGTC
GGTGGGTCGTGCTTCCAGAGATAAAAGACAAGTCATACACGTCCTCTAGC
CTTACTCTCTCTCATCGATCACAGGCCGGGCTTCGACCGCAACGCGAAAG
AGCGACGATGAAGGCTACTCAACGGGGTGGAAGATCTACGTTTGATGGTC
GCCAAGTCATCACAACATCCGTAGCCACGGCCGACAGCTCGATAAATGTC
TCGTCAGAAGCCTGCCCCGCATCCTCCCGCTGTGTTAACCACGCTGGGGG
CGTTACATGCCAGGACGAGAAGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14989:909..4283-

>mRNA_Ecto-sp13_S_contig14989.3774.1 ID=mRNA_Ecto-sp13_S_contig14989.3774.1|Name=mRNA_Ecto-sp13_S_contig14989.3774.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1083bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14989:909..4283- (Ectocarpus species13 EcNAP12_S_4_19m)
ATAGAGGACCAGCGTTTACCCATCCGACTCGCGAGGATGGACGTTTCGAG
CAGGGGAGGAATGCACGCCTGGAAGGCACTCGGGTTGAAGAGGCTGCCTG
CGGTTAAGGTGTTTGTAGGACACAATCCAGATGAGCCTCTACTGTACGCC
GGCCACCTCGATGCTAACGGCATCGCAGCGCATCTGGCGATGTTGGAAAG
GGACCGGAGGCGCGTTCTCGAACACCAAAAGAAGTATTTCAGCCCCGCGA
CAACAAGACTTGGCGATTCCAGCAGGAATGGCGGTGACGGAAGTGGCGCG
TCCGACCTCGGGATCTCAAAGCTTGAGCTGGACACGTCGGGCGTGATCCT
CGTGTCGCTTGCGGTCAGATGCAATACTGCCGCTGATGATGTGTCCGGGC
GCTTATATTCGCGGACGATGTCGCTCGGCGATAGGTTTCGGGCGGCTATC
GGACAGCAGGGGGCTTCTTTGGTACTCTTCGCGCCGGAACCTTCTCCGAA
GGCCCGGCGCATGATAAAGGAGATCCGGAAGGCGGCGCCAATCCTGGCCT
TGCGGGACCCCCCGACGAAGGTCATACTCGTCGACCTCCAAAACGCCGAC
GGTGGCGGCGGTGATGATGGCAGTCGCGGAACAGCAGTGCTCTACGAAGA
CGGGAGTCGAAGAAGGCAGGGTAGCAGCCGTGGTGGCGATCCAGCTCTTC
CACCCGGTACGGAGGACATCTTGGCCAAGCGGCAGCTTGCGGCGGACGCC
AGGGTCACCTTCGGAGACGGGCCGGAGCTTAGGATATTTCTTGACGGGAG
GCTTTGGGTCGAGGGAGGCGTGTTTCGGGGTTTGCCTACCACCGACGGGA
TCTTGCAACACATGGACTGGGTTGCGGACGAGGCCGGGCTTCGACCGCAA
CGCGAAAGAGCGACGATGAAGGCTACTCAACGGGGTGGAAGATCTACGTT
TGATGGTCGCCAAGTCATCACAACATCCGTAGCCACGGCCGACAGCTCGA
TAAATGTCTCGTCAGAAGCCTGCCCCGCATCCTCCCGCTGTGTTAACCAC
GCTGGGGGCGTTACATGCCAGGACGAGAAGTGA
back to top