mRNA_Ecto-sp13_S_contig14971.3766.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14971.3766.1
Unique NamemRNA_Ecto-sp13_S_contig14971.3766.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14971.3766.1 vs. uniprot
Match: A0A6H5KJ27_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ27_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 6.350e-47
Identity = 96/149 (64.43%), Postives = 98/149 (65.77%), Query Frame = 2 
Query:  638 SHTFTYINRVVEGPGASFNWRLCYYEMPERNPAPCHHKEPDESGGLGAPTGFSYGGGXXXXXXXXXXXXXXXQAQLQSGRGRIHGY----------------------------RLKTGKAGSGEEPLDCGLRASQVLAQGYTAALCAY 1000
            SHTFTYINRVVEGPGASFNWRLCYYEMPERNPAPCHHKEPDESGGLGAPTGFSYGGG               Q QLQSGRGRIHG                             RLKTGKAGSGEEPLDCGLRASQ+   G TA L A+
Sbjct:  223 SHTFTYINRVVEGPGASFNWRLCYYEMPERNPAPCHHKEPDESGGLGAPTGFSYGGGAGVMAGVGGSGGSSSQVQLQSGRGRIHGCDSIKCGHVPRGSENGRKYECNYKCPCADRLKTGKAGSGEEPLDCGLRASQM---GVTAPLEAF 368
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14971.3766.1 vs. uniprot
Match: D7G1M9_ECTSI (SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M9_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 1.370e-38
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 1 
Query:    1 VHQKLLEWPGASPFWIPNPIPGFSARDELVRQSTSLHEAARNGRYEVLSMLLHHCRGRGLLPGACLVPDGND 216
            VHQKLLEWPGASPFWIPNPIPGFSA DELVRQSTSLHEAARNGRYEVLSMLLHHCRGRGLLPGACLVPDGN+
Sbjct:  379 VHQKLLEWPGASPFWIPNPIPGFSAGDELVRQSTSLHEAARNGRYEVLSMLLHHCRGRGLLPGACLVPDGNE 450
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14971.3766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJ27_9PHAE6.350e-4764.43SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G1M9_ECTSI1.370e-3897.22SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14971contigEcto-sp13_S_contig14971:654..3969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1000
Hectar predicted targeting categoryother localisation
Exons5
Cds size408
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14971.3766.1prot_Ecto-sp13_S_contig14971.3766.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14971 2590..3822 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462797.8150795-UTR-Ecto-sp13_S_contig14971:653..7601681462797.8150795-UTR-Ecto-sp13_S_contig14971:653..760Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14971 654..760 -
1681462797.8272145-UTR-Ecto-sp13_S_contig14971:1255..13971681462797.8272145-UTR-Ecto-sp13_S_contig14971:1255..1397Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14971 1256..1397 -
1681462797.839641-UTR-Ecto-sp13_S_contig14971:2393..25891681462797.839641-UTR-Ecto-sp13_S_contig14971:2393..2589Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14971 2394..2589 -
1681462797.8833656-UTR-Ecto-sp13_S_contig14971:3822..39691681462797.8833656-UTR-Ecto-sp13_S_contig14971:3822..3969Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14971 3823..3969 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462797.8519707-CDS-Ecto-sp13_S_contig14971:2589..28321681462797.8519707-CDS-Ecto-sp13_S_contig14971:2589..2832Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14971 2590..2832 -
1681462797.8671877-CDS-Ecto-sp13_S_contig14971:3139..32371681462797.8671877-CDS-Ecto-sp13_S_contig14971:3139..3237Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14971 3140..3237 -
1681462797.8753715-CDS-Ecto-sp13_S_contig14971:3755..38221681462797.8753715-CDS-Ecto-sp13_S_contig14971:3755..3822Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14971 3756..3822 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14971.3766.1

>prot_Ecto-sp13_S_contig14971.3766.1 ID=prot_Ecto-sp13_S_contig14971.3766.1|Name=mRNA_Ecto-sp13_S_contig14971.3766.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=136bp
MLLHHCRGRGLLPGACLVPDGNDPSRTRFRYWPSSRDSSRNQPHPPRMIT
SFWFIGSPSPGSTRSTMNRFQGVVWCGMDTPPVPPPPPCFPILFLAGGNF
DVIGPPWVFLRRNDREGMNMRISNPNCGFRWPFLT*
back to top

mRNA from alignment at Ecto-sp13_S_contig14971:654..3969-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14971.3766.1 ID=mRNA_Ecto-sp13_S_contig14971.3766.1|Name=mRNA_Ecto-sp13_S_contig14971.3766.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3316bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14971:654..3969- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCACCAGAAGTTGCTAGAGTGGCCCGGGGCAAGCCCCTTTTGGATCCC
AAATCCCATTCCAGGGTTCAGCGCCAGGGATGAGCTCGTGAGGCAGTCGA
CCTCGCTCCACGAGGCTGCTCGCAACGGGAGGTACGAGGTGCTGTCGATG
CTGCTGCACCACTGCCGGGGGAGGGGCTTGCTGCCCGGGGCGTGCCTGGT
GCCCGATGGGAACGGTATGTACCATGCCCAAAAACCTTGGTAGCTGGTGG
TATTTGCCTTCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TTGTGTGGTGTTGATGCTGCTACTCTGTTGTTGTTATGTTGACTGCTTCT
GCTGTTGTTTTTGTTTTGTTCTCTGTTGTTGCTGTTGTTGGTGTGTGATG
CGTGTGTTGCTGCTGCTTTTCTGTTGTTGCTTTGTCGTGACTGCTGCCGC
TGTTGTTGTCATTGTTGTGATATTGCCACTGGTTACTCTGTTGTTGTGAC
TGGAGCTTGTCTGGCACTCAATTGAGTTTTTTTCGAAGCAGCAGCCCACA
TTGCATGGCTTGGTTGGTTCTCAAACCAACATCCGTGCGTGCCGACCGCC
ATGAAGTGATTGCCCTTGCACCCTGGCGATGTCTCCGCTTTACATGATAC
ACATACCCGTCCATGGGCGCTGCGTCTTTTTCCTTGTATTTTTCTTGTTC
ATTGTTTCGTTCAACAATACTACCAAAGAGAGACCCTTCGAGGACACGAT
TTAGATATTGGCCATCGTCGAGGGACAGCAGCAGAAATCAACCCCACCCC
CCAAGGATGATAACCAGCTTCTGGTTCATCGTTGTGAAGCGTAGCCTGGG
CCGGCGAAAACTCGGCGTGCAGTATCGCTCCGTCTCGTCATTGTTAGGAT
GCGAGGTCAAAAGTCTATCGAGCACGGCACGCGTGTACATGCATGACTAC
ACCGCCCGCCCTATGTACCGCCTGCGTTTACAAGGGAAAACCGCGTACGA
GATCGCGATGGTCAAGAACGAGACCGAGTGCGGGAGGCTCTTCACCACCA
CCTTCAGCGACCTACCCCACGTGGCCCCCCGGCTGGGCTGGAGGAAGGGC
CGAACGCGCGGCAAGGACATATCGGGGGGGAGGGAAGGGGTCCCCATCCC
CTGGGTCAACGAGGTCGACGATGAACCGTTTCCAAGGTGTAGTGTGGTGT
GGCATGGATACCCCGCCTGTGCCCCCCCCCCCCCCTTGTTTCCCTATTCT
TTTTTTGGCGGGGGGGAATTTCGACGTCATCGGCCCCCCTTGGGTATTCC
TGCGTAGAAATGATCGAGAGGGCATGAACATGCGAATTTCAAACCCCAAC
TGCGGATTTCGGTGGCCGTTTCTCACCTAACCCTCCACTACCGGGTGTTC
TGCCACTGCCACTGCCACTGCCACTGCCACTGCCACTGCCACAAAACTAC
TGCTGTACACGCAGCCACACGTTCACGTACATCAACCGTGTGGTGGAGGG
GCCCGGCGCGTCGTTCAACTGGCGGCTCTGCTACTACGAGATGCCAGAGA
GAAATCCCGCCCCTTGTCACCATAAGGTAACTGCGTATATAAAAGTCGGT
GTGTATGCCAGGCTAGTGCCCTCTTGAGCGTTCTTCATGGCAATGCAATC
GTCTGTGCTATGTGCCGGGCTAGCTAGCCTAAATAGTTGCCGTCTTGAGC
GTTGAGACTTCATGGTTATGCAATCGTCTGTGCTTTCGATGTGCGGGGCT
AGCTAGCGTAAGAGAAATAGCTGCCTTCTCGAGCATCGAGTCTTTCTCCA
ACTACAATCGTTTGCGCTTTGATTCTGTAGCGCACGTTAGCAAGGGGACT
GTTGTAGCGGTGGGCGTGTTCTTGCGGTCCAGAAGGTCAAAGTGTACCAG
GCTGCGGCAGGCGGTTGCCCCTGTCAGCGTTGATCGCCATGGCGTACAGT
TTGATCCTTTAGCGCTTGTCAGGCAGTAGTCTGTCTTGTCAGCAAAGAGT
CTAACCCAGCGGTGGCCAAGCAGAGCACGAGGTTAACGCGGCGAACAGTA
GGGCAGGGCTGTAATTGCGAAATTTATCAAGAGGTGGCTGTTACAAACTT
GAGTCACAATGGTCCCCAGTGCCTACGTACCCAAGCGTCACACCAGAGTT
GCAACGGATCGAAACAAAGTAGATGCCCGATAAAAGCGGAGGCTCAGGCG
TTAGGCACCCAAGCGTTAACACACCGACATCGCGATAATGTTATTGTTGG
TGTCGTCTTCAAATTGAAAACCGTTCCCGTCTCCGCTAAGAGCCTTCTCA
CATCCGTACTGGTCCACAATGGATTGACAAAAAACAGGAGCCCGATGAAA
GTGGAGGCCTGGGCGCCAAGCGTTACCGCGCCGATATCCCAAGTTGTTGT
TATTGGTGTCGTCTTTACACTGAAAACCGTTCCGGTCTTCGCTCAGTGCC
TTCTAATATCCGCACTGGTCCTTTTATCAAGTGGTGGCTGTTACAAGCTT
GAGTCACAATCGTTCCCAGTGCCTACGTACCCAAGCGTCACACCAGCATT
GCAATGGATCGAACAAAAACAGGAGCCCGATGAAAGCGGAGGCTTGGGCG
CCCCCACGGGTTTCAGCTACGGCGGAGGCGGTGGCGTCATGGCCGGGGTA
GGCGGGTCGGGGGGCTCGAGCTCCCAGGCCCAGCTCCAAAGCGGTCGAGG
TCGAATCCACGGGTGTGACAGCATCAAGTGCGGTCATGTTCCTCGCGGGA
GTGAAAACGGGTGAGTGAGAAGGGAGGGTGAGAGTGGAAGGGGGGAGGGA
GCGGTGCTGCCGTGCGGTGGGTGGTGTGTTGTTCGTGCAGATCTCTCGAT
GGCTTGTATGTATGCGTTGGTACGTGGGTAGGTTGTATCCAAGTGTTTCA
GCCGTTTGTTTGGTGAGTTATTGCGTTCAAAATGGTGAATTTTCTGTTGT
CGTTGTTGTTGTTGTTGTTGTTGGTGTTGGTGGTGTTGGTGTTAGCGTTA
CTGTTGCTGCTGCTGCTGTTGGCTTTTACTGTTGGCTGTGCTGCTTGTAC
GTACTGGTCCCGAATTGATGCCTACCCTGGTGGAATAGAGGTGGTGCCCC
TCCCCCAAAATGCCCCCTATGTTTATCGCTTGGAACCCTAACCACACCCG
CTGCTCCTTCCTACTTCTCAGGCGCAAGTACGAGTGTAACTACAAGTGTC
CCTGTGCAGACCGTCTCAAGACGGGCAAGGCGGGCAGTGGGGAGGAACCC
CTCGACTGCGGCCTAAGGGCATCCCAGGTACTAGCACAAGGTTACACAGC
CGCATTGTGTGCATAT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14971:654..3969-

>mRNA_Ecto-sp13_S_contig14971.3766.1 ID=mRNA_Ecto-sp13_S_contig14971.3766.1|Name=mRNA_Ecto-sp13_S_contig14971.3766.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14971:654..3969- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCTGCACCACTGCCGGGGGAGGGGCTTGCTGCCCGGGGCGTGCCT
GGTGCCCGATGGGAACGACCCTTCGAGGACACGATTTAGATATTGGCCAT
CGTCGAGGGACAGCAGCAGAAATCAACCCCACCCCCCAAGGATGATAACC
AGCTTCTGGTTCATCGGGTCCCCATCCCCTGGGTCAACGAGGTCGACGAT
GAACCGTTTCCAAGGTGTAGTGTGGTGTGGCATGGATACCCCGCCTGTGC
CCCCCCCCCCCCCTTGTTTCCCTATTCTTTTTTTGGCGGGGGGGAATTTC
GACGTCATCGGCCCCCCTTGGGTATTCCTGCGTAGAAATGATCGAGAGGG
CATGAACATGCGAATTTCAAACCCCAACTGCGGATTTCGGTGGCCGTTTC
TCACCTAA
back to top