mRNA_Ecto-sp13_S_contig14967.3762.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14967.3762.1
Unique NamemRNA_Ecto-sp13_S_contig14967.3762.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14967.3762.1 vs. uniprot
Match: D8LKE5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKE5_ECTSI)

HSP 1 Score: 497 bits (1280), Expect = 3.840e-171
Identity = 276/350 (78.86%), Postives = 294/350 (84.00%), Query Frame = 1 
Query:    1 NFDKARQLAKCQERKAMPREYDPRRYGPITSSSRAPVPSRSASAARAGEVRREGQLLFTTSPRQRGRLSSQRQQQRRVGVGGECSWPSRSGTPKWQVASRGLRSFAEEAAFSHGCCRKISLKFTANPLHGESRRTAAPKGGTRGEGASRQLHARRAPLKDIDTTASTCLESTRDTADAAAXXXXXXXXXXXXXDTSHESRGRTRRRSLNWHCRQKLGGGLQQRQQLPATTPTSSFSTFCSSPSAFGSHNNANTLIDNSGRINDGRCSCCTTPRQQYFFCESMLRSTSCGSSVSSGNEAAGGREGGTRRDARGRRRGRSAGEPGGKERGSGGAGRGEGIDAEELFRRKNKV 1050
            +F+K RQLA+C+ERKAMPREYDPRRYGPI SSSRAPV SRSASAA AGEVRREGQL+F+TSPR+ GRLSSQRQ+Q RVGVGGECSWPSRSG+PKWQV SRGLRSF+EEAA SHG              HGESR  AAP+GGTRGE A RQLHARRAP KDI+TTASTCLESTRDTADAAA             DT HESRGRTRRRSL+WHCR+KLGG LQQRQQ PATTPT S S FC SPSAF S+NNAN LIDNS RINDG CSCCTTPRQQYF CESMLRST+CGSSVSSGNEAAG REGGTRR+ARGRRRGRSAGEPG KERGSGGAG GE IDAEELFRRKNK+
Sbjct:    6 HFEKVRQLARCRERKAMPREYDPRRYGPIASSSRAPVSSRSASAAPAGEVRREGQLVFSTSPRRGGRLSSQRQRQGRVGVGGECSWPSRSGSPKWQVPSRGLRSFSEEAAVSHG--------------HGESRMAAAPEGGTRGERAHRQLHARRAPFKDINTTASTCLESTRDTADAAAATSGSSDAAAAA-DTGHESRGRTRRRSLSWHCREKLGGDLQQRQQPPATTPTYSSSAFCPSPSAFSSYNNANMLIDNSSRINDGSCSCCTTPRQQYFCCESMLRSTNCGSSVSSGNEAAGEREGGTRREARGRRRGRSAGEPG-KERGSGGAGCGESIDAEELFRRKNKM 339
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BLAST of mRNA_Ecto-sp13_S_contig14967.3762.1 vs. uniprot
Match: A0A6H5JDG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDG8_9PHAE)

HSP 1 Score: 313 bits (801), Expect = 2.950e-99
Identity = 183/222 (82.43%), Postives = 190/222 (85.59%), Query Frame = 1 
Query:  385 HGESRRTAAPKGGTRGEGASRQLHARRAPLKDIDTTASTCLESTRDTADAAAXXXXXXXXXXXXXDTSHESRGRTRRRSLNWHCRQKLGGGLQQRQQLPATTPTSSFSTFCSSPSAFGSHNNANTLIDNSGRINDGRCSCCTTPRQQYFFCESMLRSTSCGSSVSSGNEAAGGREGGTRRDARGRRRGRSAGEPGGKERGSGGAGRGEGIDAEELFRRKNKV 1050
            HGESRRTAAPKGGTRGE A RQLHARR P KDI+TTASTCLESTRDT DAAA   XXXXXXXX  DTSHESRGRTR RSL+WHCRQKLGG LQQ     ATTPT S S FC SPSAF S+NN N LIDNSGRINDG CSCCTTPRQQYF CESMLRSTSCGSS+SSGNE+AG REGGT R+ARGRR GRSAGEPGGKERGSGGAG  E IDAEELFRRKNK+
Sbjct:   13 HGESRRTAAPKGGTRGERAYRQLHARRTPFKDINTTASTCLESTRDTTDAAAATSXXXXXXXXA-DTSHESRGRTRERSLSWHCRQKLGGDLQQXXXXXATTPTYSSSAFCPSPSAFSSYNNTNMLIDNSGRINDGNCSCCTTPRQQYFCCESMLRSTSCGSSISSGNESAGEREGGTSREARGRR-GRSAGEPGGKERGSGGAGCRESIDAEELFRRKNKM 232
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BLAST of mRNA_Ecto-sp13_S_contig14967.3762.1 vs. uniprot
Match: A0A6H5JG37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG37_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 3.940e-51
Identity = 91/115 (79.13%), Postives = 101/115 (87.83%), Query Frame = 1 
Query:    1 NFDKARQLAKCQERKAMPREYDPRRYGPITSSSRAPVPSRSASAARAGEVRREGQLLFTTSPRQRGRLSSQRQQQRRVGVGGECSWPSRSGTPKWQVASRGLRSFAEEAAFSHGC 345
            +F+KARQLA+C+ERK MPREYDPRRYGPI S S APV SRSASAA AG+V R+GQL+F+TSPR+  RLSSQRQ+QRRVGVGGECSWPSRSGTPKWQV   GLRSFAEEAA SH C
Sbjct:    6 HFEKARQLARCRERKVMPREYDPRRYGPIASRSIAPVSSRSASAAPAGQVCRDGQLVFSTSPRRGDRLSSQRQRQRRVGVGGECSWPSRSGTPKWQVEPWGLRSFAEEAAVSHRC 120
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14967.3762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LKE5_ECTSI3.840e-17178.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDG8_9PHAE2.950e-9982.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG37_9PHAE3.940e-5179.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14967contigEcto-sp13_S_contig14967:1994..4193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1050
Hectar predicted targeting categoryother localisation
Exons3
Cds size1050
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462797.5626414-CDS-Ecto-sp13_S_contig14967:1993..23381681462797.5626414-CDS-Ecto-sp13_S_contig14967:1993..2338Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14967 1994..2338 +
1681462797.5730696-CDS-Ecto-sp13_S_contig14967:2619..26571681462797.5730696-CDS-Ecto-sp13_S_contig14967:2619..2657Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14967 2620..2657 +
1681462797.5821915-CDS-Ecto-sp13_S_contig14967:3526..41931681462797.5821915-CDS-Ecto-sp13_S_contig14967:3526..4193Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14967 3527..4193 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14967.3762.1prot_Ecto-sp13_S_contig14967.3762.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14967 1994..4193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14967.3762.1

>prot_Ecto-sp13_S_contig14967.3762.1 ID=prot_Ecto-sp13_S_contig14967.3762.1|Name=mRNA_Ecto-sp13_S_contig14967.3762.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=350bp
NFDKARQLAKCQERKAMPREYDPRRYGPITSSSRAPVPSRSASAARAGEV
RREGQLLFTTSPRQRGRLSSQRQQQRRVGVGGECSWPSRSGTPKWQVASR
GLRSFAEEAAFSHGCCRKISLKFTANPLHGESRRTAAPKGGTRGEGASRQ
LHARRAPLKDIDTTASTCLESTRDTADAAAATSGSGDAAAAAADTSHESR
GRTRRRSLNWHCRQKLGGGLQQRQQLPATTPTSSFSTFCSSPSAFGSHNN
ANTLIDNSGRINDGRCSCCTTPRQQYFFCESMLRSTSCGSSVSSGNEAAG
GREGGTRRDARGRRRGRSAGEPGGKERGSGGAGRGEGIDAEELFRRKNKV
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mRNA from alignment at Ecto-sp13_S_contig14967:1994..4193+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14967.3762.1 ID=mRNA_Ecto-sp13_S_contig14967.3762.1|Name=mRNA_Ecto-sp13_S_contig14967.3762.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2200bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14967:1994..4193+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACTTCGATAAGGCGAGGCAACTGGCAAAGTGCCAAGAGAGGAAGGCTAT
GCCGAGAGAGTACGACCCCCGACGATACGGACCCATTACGAGCAGCAGCA
GAGCCCCTGTGCCATCCCGGTCGGCATCTGCTGCGCGCGCGGGAGAGGTG
CGTCGAGAGGGGCAGCTCCTGTTTACGACGTCACCAAGGCAGCGTGGTCG
GCTGAGCTCCCAGCGACAACAACAGCGCCGCGTTGGTGTCGGCGGCGAAT
GCTCTTGGCCATCGCGCAGTGGAACACCGAAATGGCAGGTTGCGTCGCGG
GGACTGCGTTCGTTTGCCGAGGAAGCTGCATTCTCTCACGGGTGCGTGTG
AGATGTGAGAGCGTGACGAAAAAACACAAAAACGGCAGTTACACACGGAC
GCACACACCTACACACCTTCTCCGTTGTTGCACGACGACTCCACGAATGA
TTCGCAAAAGGGAGTATTCTGCAGCACGCCCGTCCAATCGCTATGGCGAC
TAGCACTTGTACGACTGCAAGATGCGGGCTATGGAGCAGAGAATGAGCGA
TGCCTGCAATATGCACGCTTTCAAAGCTGGTGGGAACAAATCAGCACTCA
ACAGTAAAGTAGGGAATTCGAAAAAGTGTCGAAAAATTTCTCTCAAATTT
ACAGCCAATCCTCTGTCGGGCTTGTGTACCCTTCTCTTGATAATAGTGTG
CGCGTTCTTTAGATCTTCTGATGGCTCTAGCATTTTTGTGACCACGGGCC
GAGTCTTTGCTAGATTTTGGGATTAGCAAATGACACGAGCTTGATGTGAA
GAAAAACAACAAACAAATAACAACCAACCTTCACGGCGGGCAAAATGCCG
ACAACTGAAAGCGCACCAGAAAAAAATAAAGTGTAACTCTATGCAAAAAT
TGGCACAGGACGCGCCTCTACTACTGTGACTGAAGAAACTCTTGTTTTGG
GGGTTGGGCAATCCCCGCGGCCTCCTCGGCGAGTAAACCAATACATATAA
GTACTTCGATTCTTCAATTCGAAACCTTCACGAAAAAGAGCACGTGCACA
GCAGTATTACTTCGCGACGAAGGCTGTTTTGTAGCGTGCAAGAATACAAC
CCATGCCCCGAAAGCAATTGGCCGCTCTGAGATAAGAGAGAAAGCGCAAC
AATACTCGGGAAGAAGATAACAAACGTCTGTCTGGTACTTGCACCCACCG
CTCGGCTCATTGGGCGAACAAAACAGGTCTGCGTGCCAAACCACCGATAT
TCATGGTGTTGCTTGCGATGTGTACTGCTTTGAAGTGTGCGCCCTGCCGA
GCAGGCAGACAACATGGCCTGTGGATCTGTGATTGTTGGATGGTCGACTA
CAATTGGGGACACAGGTACCTTAGCAGCTGCTGCGATGGCAAAACGAAAT
GAGATGTGGACCGCAGTTGTTGACAGCTCCTCTACGGTAGACGAAATACA
CGAACACCGATACGTTTATCGCCCGACAGCTGCGGTCCGGCTCTGTTGTG
CTAACCGCGGCGTGGTCTGTCTCGATTTTGCAGCCACGGAGAATCGCGGA
GGACTGCGGCACCGAAAGGCGGCACGAGAGGAGAAGGGGCTTCCCGGCAG
CTGCACGCCCGGCGCGCTCCTTTGAAGGACATCGACACCACCGCGTCGAC
TTGTCTCGAGTCGACTCGTGACACGGCAGACGCTGCCGCAGCGACAAGCG
GTAGCGGTGACGCCGCCGCCGCCGCCGCTGACACTAGCCACGAGAGCAGA
GGTCGCACGCGAAGGAGGTCTCTCAACTGGCACTGCCGCCAGAAACTCGG
CGGTGGTCTACAACAGCGGCAACAGCTTCCTGCGACGACTCCGACGTCCT
CCTTTTCCACCTTCTGTTCGTCTCCTTCTGCCTTCGGCAGCCACAACAAC
GCCAACACGCTGATCGACAACAGCGGCAGGATCAACGACGGCAGGTGCAG
CTGCTGTACCACCCCGCGACAGCAATATTTTTTCTGCGAGTCGATGCTGC
GGAGCACCAGCTGCGGCAGTAGCGTCAGCAGTGGCAACGAGGCAGCAGGC
GGAAGAGAAGGAGGGACGAGGCGCGATGCCCGGGGGAGGAGGCGGGGGCG
GTCGGCTGGAGAACCGGGCGGCAAGGAGAGGGGGTCAGGAGGGGCTGGGC
GTGGCGAGGGGATTGACGCGGAAGAATTGTTTCGCCGGAAGAACAAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14967:1994..4193+

>mRNA_Ecto-sp13_S_contig14967.3762.1 ID=mRNA_Ecto-sp13_S_contig14967.3762.1|Name=mRNA_Ecto-sp13_S_contig14967.3762.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1050bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14967:1994..4193+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACTTCGATAAGGCGAGGCAACTGGCAAAGTGCCAAGAGAGGAAGGCTAT
GCCGAGAGAGTACGACCCCCGACGATACGGACCCATTACGAGCAGCAGCA
GAGCCCCTGTGCCATCCCGGTCGGCATCTGCTGCGCGCGCGGGAGAGGTG
CGTCGAGAGGGGCAGCTCCTGTTTACGACGTCACCAAGGCAGCGTGGTCG
GCTGAGCTCCCAGCGACAACAACAGCGCCGCGTTGGTGTCGGCGGCGAAT
GCTCTTGGCCATCGCGCAGTGGAACACCGAAATGGCAGGTTGCGTCGCGG
GGACTGCGTTCGTTTGCCGAGGAAGCTGCATTCTCTCACGGGTGCTGTCG
AAAAATTTCTCTCAAATTTACAGCCAATCCTCTCCACGGAGAATCGCGGA
GGACTGCGGCACCGAAAGGCGGCACGAGAGGAGAAGGGGCTTCCCGGCAG
CTGCACGCCCGGCGCGCTCCTTTGAAGGACATCGACACCACCGCGTCGAC
TTGTCTCGAGTCGACTCGTGACACGGCAGACGCTGCCGCAGCGACAAGCG
GTAGCGGTGACGCCGCCGCCGCCGCCGCTGACACTAGCCACGAGAGCAGA
GGTCGCACGCGAAGGAGGTCTCTCAACTGGCACTGCCGCCAGAAACTCGG
CGGTGGTCTACAACAGCGGCAACAGCTTCCTGCGACGACTCCGACGTCCT
CCTTTTCCACCTTCTGTTCGTCTCCTTCTGCCTTCGGCAGCCACAACAAC
GCCAACACGCTGATCGACAACAGCGGCAGGATCAACGACGGCAGGTGCAG
CTGCTGTACCACCCCGCGACAGCAATATTTTTTCTGCGAGTCGATGCTGC
GGAGCACCAGCTGCGGCAGTAGCGTCAGCAGTGGCAACGAGGCAGCAGGC
GGAAGAGAAGGAGGGACGAGGCGCGATGCCCGGGGGAGGAGGCGGGGGCG
GTCGGCTGGAGAACCGGGCGGCAAGGAGAGGGGGTCAGGAGGGGCTGGGC
GTGGCGAGGGGATTGACGCGGAAGAATTGTTTCGCCGGAAGAACAAGGTG
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