mRNA_Ecto-sp13_S_contig14959.3759.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14959.3759.1
Unique NamemRNA_Ecto-sp13_S_contig14959.3759.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14959.3759.1 vs. uniprot
Match: D7FUU6_ECTSI (Small heat shock protein heat shock protein 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU6_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 6.320e-74
Identity = 127/140 (90.71%), Postives = 131/140 (93.57%), Query Frame = 1
Query:    1 DFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERKSKREEKCDGEDGARKYHFVERSCGKTSRSVRLPEAADTANANADLTDGVLAITFPKKEAPASNRFRIPLGGXXXXXXXXXXGKVSIKGGAAATDGDTGS 420
            DFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERKS++EEK DG+DG RKYHFVERS GKTSRSVRLPEAADTA ANADLTDGVL ITFPKKEAP S+RFRIPLGG  XXXXXXX GKVSIKGGAAATDGDTGS
Sbjct:   68 DFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERKSEKEEKGDGKDGDRKYHFVERSYGKTSRSVRLPEAADTATANADLTDGVLTITFPKKEAPVSSRFRIPLGGGGXXXXXXXDGKVSIKGGAAATDGDTGS 207          
BLAST of mRNA_Ecto-sp13_S_contig14959.3759.1 vs. uniprot
Match: A0A6H5KKF0_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF0_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 7.830e-73
Identity = 129/140 (92.14%), Postives = 134/140 (95.71%), Query Frame = 1
Query:    1 DFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERKSKREEKCDGEDGARKYHFVERSCGKTSRSVRLPEAADTANANADLTDGVLAITFPKKEAPASNRFRIPLGGXXXXXXXXXXGKVSIKGGAAATDGDTGS 420
            DFHETKDGFELIADLPGMK+EDVSIDVDQESGVLTVSGERKSKREEK D +DG RKYHFVERS GKTSRSVRLPEAA+TANANADLTDGVL ITFPKKEAPAS+RFRIPLGGXXXXXXXXXX KVSIKGGAAAT+GDTGS
Sbjct:   38 DFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSKREEKRDDKDGDRKYHFVERSYGKTSRSVRLPEAANTANANADLTDGVLTITFPKKEAPASSRFRIPLGGXXXXXXXXXXXKVSIKGGAAATEGDTGS 177          
BLAST of mRNA_Ecto-sp13_S_contig14959.3759.1 vs. uniprot
Match: A0A6H5JFM4_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM4_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 2.820e-69
Identity = 128/143 (89.51%), Postives = 134/143 (93.71%), Query Frame = 1
Query:    1 DFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERKSKREEKCDGEDGARKYHFVERSCGKTSRSVRLPEAADTANANADLTDGVLAITFPKKEAPASNRFRIPLGGXXXXXXXXXXG---KVSIKGGAAATDGDTGS 420
            DFHETKDGFELIADLPGMK+EDVSIDVDQESGVLTVSGERKS+REEK D +DG RKYHFVERS GKTSRSVRLPEAA+TANANADLTDGVL ITFPKKEAPAS+RFRIPLGGXXXXXXXXXX    KVSIKGGAAAT+GDTGS
Sbjct:   93 DFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSEREEKRDDKDGDRKYHFVERSYGKTSRSVRLPEAANTANANADLTDGVLTITFPKKEAPASSRFRIPLGGXXXXXXXXXXXXXXKVSIKGGAAATEGDTGS 235          
BLAST of mRNA_Ecto-sp13_S_contig14959.3759.1 vs. uniprot
Match: B3VMZ8_FUCSE (Heat shock protein 20 n=2 Tax=Fucus serratus TaxID=87148 RepID=B3VMZ8_FUCSE)

HSP 1 Score: 148 bits (374), Expect = 9.250e-43
Identity = 70/111 (63.06%), Postives = 91/111 (81.98%), Query Frame = 1
Query:    1 DFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERKSKREEKCDGEDGARKYHFVERSCGKTSRSVRLPEAADTANANADLTDGVLAITFPKKEAPASNRFRIPLG 333
            DFHET  G+EL ADLPGMKKED+ +D+D ESGVLTV+GERK +REEK +G++  RKYHF+ERS GKT+RSVRLP+ A T+ A+A+  +GVL I FPK+E P++ R +IP+G
Sbjct:   67 DFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERKQEREEKSEGDNEQRKYHFLERSYGKTTRSVRLPDTAATSKASAEYVNGVLKINFPKREPPSARRLQIPIG 177          
BLAST of mRNA_Ecto-sp13_S_contig14959.3759.1 vs. uniprot
Match: A0A0D2UFN1_CAPO3 (Small HspC2 heat shock protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UFN1_CAPO3)

HSP 1 Score: 96.7 bits (239), Expect = 1.620e-22
Identity = 51/108 (47.22%), Postives = 73/108 (67.59%), Query Frame = 1
Query:    1 DFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERKSKREEKCDGEDGARKYHFVERSCGKTSRSVRLPEAADTANANADLTDGVLAITFPKKEAPASNRFRI 324
            D HE+ DG+ + ADLPGMKK+++S++   E+G+LT+SGE+K ++E K D       YH  ERS G+ SR++RLP  AD++ ANA  TDGVL +   K+  PA +R  I
Sbjct:   77 DVHESSDGYHISADLPGMKKDEISVNC--ENGILTISGEKKQEQE-KSD-----HTYHVFERSVGRVSRTLRLPRDADSSKANAKYTDGVLTLDIAKRALPAGSRIAI 176          
BLAST of mRNA_Ecto-sp13_S_contig14959.3759.1 vs. uniprot
Match: A0A6H5JPQ3_9PHAE (HSP20 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ3_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 8.570e-22
Identity = 53/73 (72.60%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    1 DFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERKSKREEKCDGEDGARKYHFVERSCGKTSRSVRL 219
            DFHETKDGFELIADLPGMK+EDVSIDVDQESGVLTVSGERKSKRE K DG++G R     ER+ G     + L
Sbjct:   38 DFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSKRE-KLDGKNGDRS---TERNFGAVMGCLEL 106          
BLAST of mRNA_Ecto-sp13_S_contig14959.3759.1 vs. uniprot
Match: A0A660RGY2_9THEM (Hsp20/alpha crystallin family protein n=2 Tax=Thermotogales TaxID=2419 RepID=A0A660RGY2_9THEM)

HSP 1 Score: 87.0 bits (214), Expect = 5.110e-19
Identity = 48/99 (48.48%), Postives = 61/99 (61.62%), Query Frame = 1
Query:    1 DFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERKSKREEKCDGEDGARKYHFVERSCGKTSRSVRLPEAADTANANADLTDGVLAITFPKKE 297
            D +ETKD   +  +LPGM K+DV + +  E+ VLT+SGE+KS+REEK       R Y  VERS GK  RS  +P+  DT N  A    G+L IT PKKE
Sbjct:   50 DIYETKDAINIDVELPGMDKKDVKVKI--ENNVLTISGEKKSEREEK------GRNYRVVERSFGKFERSFIIPDTVDTKNVKAKFEKGILKITLPKKE 140          
BLAST of mRNA_Ecto-sp13_S_contig14959.3759.1 vs. uniprot
Match: UPI000C1D11E1 (17.8 kDa class I heat shock protein-like n=3 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D11E1)

HSP 1 Score: 85.9 bits (211), Expect = 1.630e-18
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 1
Query:    1 DFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERKSKREEKCDGEDGARKYHFVERSCGKTSRSVRLPEAADTANANADLTDGVLAITFPKKE 297
            D+ ET +G    ADLPG+KKE+V ++V +E GVL +SGER  ++EEK D      K+H VERS GK  R  RLPE A T    A + +GVL +T PK+E
Sbjct:   55 DWKETPEGHVFKADLPGLKKEEVKVEV-EEGGVLQISGERSKEQEEKND------KWHRVERSSGKFLRRFRLPENAKTDQVKASMENGVLTVTVPKEE 146          
BLAST of mRNA_Ecto-sp13_S_contig14959.3759.1 vs. uniprot
Match: A0A1R3HFU4_9ROSI (SHSP domain-containing protein n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3HFU4_9ROSI)

HSP 1 Score: 84.7 bits (208), Expect = 2.710e-18
Identity = 48/105 (45.71%), Postives = 65/105 (61.90%), Query Frame = 1
Query:    1 DFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERKSKREEKCDGEDGARKYHFVERSCGKTSRSVRLPEAADTANANADLTDGVLAITFPKKEAPASNR 315
            D+ ET +    I+DLPG+KKE+V ++VD E  VL ++GERK ++++K D      K+H VER  GK  RS RLPE A T    A + DGVL +T PK+E     R
Sbjct:   31 DWKETPEAHVFISDLPGLKKEEVKVEVDDER-VLKITGERKVEKDDKND------KWHRVERCRGKFQRSFRLPETAKTDEIKASMEDGVLVVTVPKQEVKKPER 128          
BLAST of mRNA_Ecto-sp13_S_contig14959.3759.1 vs. uniprot
Match: A0A2H6B979_9BACT (Spore protein SP21 n=1 Tax=bacterium HR41 TaxID=2035436 RepID=A0A2H6B979_9BACT)

HSP 1 Score: 84.7 bits (208), Expect = 3.950e-18
Identity = 51/112 (45.54%), Postives = 68/112 (60.71%), Query Frame = 1
Query:    1 DFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERKSKREEKCDGEDGARKYHFVERSCGKTSRSVRLPEAADTANANADLTDGVLAITFPKKEAPASNRFRIPLGG 336
            D +ET D + L ADLPG+ + DVSI+V  E+GVLT+SGER+S+REEK DG      +   ER+ G+ SRS+ LPE  D     A+   GVL +  PK E    +R +I   G
Sbjct:   35 DLYETDDAYVLKADLPGLSENDVSIEV--ENGVLTISGERRSEREEKRDG------WIRAERTFGRFSRSLTLPEGVDPNRITAEFDKGVLTVRVPKPEQHRPHRVQIRAAG 138          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14959.3759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUU6_ECTSI6.320e-7490.71Small heat shock protein heat shock protein 20 n=1... [more]
A0A6H5KKF0_9PHAE7.830e-7392.14HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5JFM4_9PHAE2.820e-6989.51HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
B3VMZ8_FUCSE9.250e-4363.06Heat shock protein 20 n=2 Tax=Fucus serratus TaxID... [more]
A0A0D2UFN1_CAPO31.620e-2247.22Small HspC2 heat shock protein n=1 Tax=Capsaspora ... [more]
A0A6H5JPQ3_9PHAE8.570e-2272.60HSP20 protein (Fragment) n=1 Tax=Ectocarpus sp. CC... [more]
A0A660RGY2_9THEM5.110e-1948.48Hsp20/alpha crystallin family protein n=2 Tax=Ther... [more]
UPI000C1D11E11.630e-1849.4917.8 kDa class I heat shock protein-like n=3 Tax=O... [more]
A0A1R3HFU4_9ROSI2.710e-1845.71SHSP domain-containing protein n=1 Tax=Corchorus o... [more]
A0A2H6B979_9BACT3.950e-1845.54Spore protein SP21 n=1 Tax=bacterium HR41 TaxID=20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14959contigEcto-sp13_S_contig14959:3356..4290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score230.3
Seed ortholog evalue5.4e-58
Seed eggNOG ortholog2880.D7FUU6
Model size423
KEGG koko:K07200,ko:K13993
KEGG Pathwayko04068,ko04141,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,map04068,map04141,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Exons2
EggNOG free text desc.response to heat
EggNOG OGsCOG0071@1,KOG0710@2759
Cds size423
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462797.4103384-CDS-Ecto-sp13_S_contig14959:3355..36111681462797.4103384-CDS-Ecto-sp13_S_contig14959:3355..3611Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14959 3356..3611 -
1681462797.4307609-CDS-Ecto-sp13_S_contig14959:4123..42901681462797.4307609-CDS-Ecto-sp13_S_contig14959:4123..4290Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14959 4124..4290 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14959.3759.1prot_Ecto-sp13_S_contig14959.3759.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14959 3356..4290 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14959.3759.1

>prot_Ecto-sp13_S_contig14959.3759.1 ID=prot_Ecto-sp13_S_contig14959.3759.1|Name=mRNA_Ecto-sp13_S_contig14959.3759.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
DFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERKSKREEKCDG
EDGARKYHFVERSCGKTSRSVRLPEAADTANANADLTDGVLAITFPKKEA
PASNRFRIPLGGGGGGGGGSGDGKVSIKGGAAATDGDTGS*
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mRNA from alignment at Ecto-sp13_S_contig14959:3356..4290-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14959.3759.1 ID=mRNA_Ecto-sp13_S_contig14959.3759.1|Name=mRNA_Ecto-sp13_S_contig14959.3759.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=935bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14959:3356..4290- (Ectocarpus species13 EcNAP12_S_4_19m)
GACTTCCACGAGACAAAGGATGGGTTTGAGCTGATTGCCGACCTTCCCGG GATGAAGAAAGAGGACGTCTCCATTGATGTTGACCAGGAATCCGGCGTGC TGACGGTGTCGGGCGAGCGTAAGAGCAAGAGGGAGGAGAAGTGCGACGGC GAGGACGGCGCCAGGAAGTGAGTGACCCGAACGCGCGGTTGTCGGACTCC CGTCCGCGTATGTAACTCTTTGTGGTCCAATCGTCTCAAGGCTTGCCCGG ATCACCTAGCTAGCTAGATGTTCCCCTAGGCGTTTGATGCAATTTTGTTG GAAGCTTTGCCAAGTTGGTGGTGCGATGGCCTGGAAGACATGTAAGCTCG TGGTCACGAATAACACAGAACAAAATTGCGGGGCAGTCATGGGCTGCTTC GAGCTTCTTTCCGGTCGGCATGAAAGTCGTCTACTGCTTACTGTAGCCAA GATCCTACTTCCTGATGACACTCCACGACACTTCCGAACGACCGAATACC CCGCGCTCAACAAACACATCGACCGGCCTCGATCATGTACCAGCCACAAC ACGCTTCCCAGGCGTTGTTTCTCTCTTTCCGCGAGATCTACAACTCTTCA CGCACCCACTCCCCCCTTCTGAATCGTCCGCTGCGTCTCTCTCGAATGAA AAAACTAACCCTTCTGTCCATCATCACAGGTACCACTTTGTGGAGCGTTC CTGTGGCAAGACCTCCCGGTCTGTCCGCCTCCCGGAGGCAGCGGACACCG CCAACGCCAACGCCGACCTCACCGACGGCGTCCTGGCCATCACCTTCCCC AAGAAGGAGGCCCCCGCCTCGAACCGCTTCCGGATCCCGTTGGGCGGCGG CGGTGGCGGCGGGGGCGGGTCTGGCGACGGCAAGGTTTCCATCAAAGGAG GCGCTGCTGCTACCGACGGCGACACTGGGTCCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14959:3356..4290-

>mRNA_Ecto-sp13_S_contig14959.3759.1 ID=mRNA_Ecto-sp13_S_contig14959.3759.1|Name=mRNA_Ecto-sp13_S_contig14959.3759.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14959:3356..4290- (Ectocarpus species13 EcNAP12_S_4_19m)
GACTTCCACGAGACAAAGGATGGGTTTGAGCTGATTGCCGACCTTCCCGG
GATGAAGAAAGAGGACGTCTCCATTGATGTTGACCAGGAATCCGGCGTGC
TGACGGTGTCGGGCGAGCGTAAGAGCAAGAGGGAGGAGAAGTGCGACGGC
GAGGACGGCGCCAGGAAGTACCACTTTGTGGAGCGTTCCTGTGGCAAGAC
CTCCCGGTCTGTCCGCCTCCCGGAGGCAGCGGACACCGCCAACGCCAACG
CCGACCTCACCGACGGCGTCCTGGCCATCACCTTCCCCAAGAAGGAGGCC
CCCGCCTCGAACCGCTTCCGGATCCCGTTGGGCGGCGGCGGTGGCGGCGG
GGGCGGGTCTGGCGACGGCAAGGTTTCCATCAAAGGAGGCGCTGCTGCTA
CCGACGGCGACACTGGGTCCTAG
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