mRNA_Ecto-sp13_S_contig1492.3744.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1492.3744.1
Unique NamemRNA_Ecto-sp13_S_contig1492.3744.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1492.3744.1 vs. uniprot
Match: D7FKK2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKK2_ECTSI)

HSP 1 Score: 511 bits (1316), Expect = 2.790e-181
Identity = 268/279 (96.06%), Postives = 272/279 (97.49%), Query Frame = 3 
Query:  132 MKRKLTKRKPIPLVPPAIRSRKKARQIVTTFHKLEKEADEVSSSTAPDKQARRERLERELDKMGGREAYQSASLLSVSFHNTSKWVTKQLAGKLDLRPANGEPPLRVLEVGAINTRLLDVPWLDVRAIDLKSQHPRIEERDFFSLEPAGEYDVVSSSMVINCVPTAKGRHEMLVGYRNHLRNGGHLFLVLPLLCLTKSTRTTRESFLETLSRIGFTVVAKKETPKVAFFCLRNTPLEARDV--GGSSLATKEGGTRGAGAAKGTSRKRNRGANDFAVSP 962
            MKRK TKRKPIPLVPPAIRSRKKARQIVTTFHKLEKEADEVSSSTAPDKQAR ERLERELD+MGGR+AYQSASLLSVSFHNTSKWVTKQLAGK+ LRPANGEPPLRVLEVGAINTRLLDVPWLDVRAIDLKSQHPRIEERDFFSLEPAGEYDVVSSSMVINCVPTAKGRHEMLVGYR+HLRNGGHLFLVLPLLCLTKSTRTTRESFLETLSRIGF VVAKKETPKVAFFCLRNT LEARDV  GGSSLATKEGGTRGAGAAKGTSRKRNRGANDFAVSP
Sbjct:    1 MKRKATKRKPIPLVPPAIRSRKKARQIVTTFHKLEKEADEVSSSTAPDKQARLERLERELDEMGGRQAYQSASLLSVSFHNTSKWVTKQLAGKMGLRPANGEPPLRVLEVGAINTRLLDVPWLDVRAIDLKSQHPRIEERDFFSLEPAGEYDVVSSSMVINCVPTAKGRHEMLVGYRSHLRNGGHLFLVLPLLCLTKSTRTTRESFLETLSRIGFMVVAKKETPKVAFFCLRNTRLEARDVQVGGSSLATKEGGTRGAGAAKGTSRKRNRGANDFAVSP 279
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BLAST of mRNA_Ecto-sp13_S_contig1492.3744.1 vs. uniprot
Match: A0A2P4Y049_9STRA (Uncharacterized protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y049_9STRA)

HSP 1 Score: 246 bits (628), Expect = 6.750e-77
Identity = 134/244 (54.92%), Postives = 168/244 (68.85%), Query Frame = 3 
Query:  111 AVGWPTRMKRKLTKRKPIPLVPPAIRSRKKARQIVTTFHKLEKEADEVSSSTAPDKQARRERLER------ELDKMGGREAYQSASLLSVSFHNTSKWVTKQLAGKLDLRPANGEPPLRVLEVGAINTRLLDVPWLDVRAIDLKSQHPRIEERDFFSLEPAGEYDVVSSSMVINCVPTAKGRHEMLVGYRNHLRNGGHLFLVLPLLCLTKSTRTTRESFLETLSRIGFTVVAKKETPKVAFFCL 824
            A G   +MK+    RK + + PP ++SR+KARQ+ T FH+L  E D +      D QA+ +R ER      +L+++GGR+AYQ AS+LS SFH TSKWV  QL  + +LRP   +PPLRVLEVGAINT+LL  PWLDVRAIDL S+H RIE+RDFFSL+P GE+ V+ SSMV+NCVP A  R EML  YR HL+ GG LFL+LPLLCL  S   T   F + L  +GF V   K++PKVAFFCL
Sbjct:    3 ADGGKPKMKKAKKSRKALHIAPPRMKSRRKARQVTTNFHRLTHELDRLKQQKPADAQAQAQRNERMAQVNKQLEELGGRQAYQDASILSTSFHRTSKWVF-QLLTRFELRPKAKQPPLRVLEVGAINTQLLSCPWLDVRAIDLNSRHERIEQRDFFSLKPTGEFQVLVSSMVLNCVPGADKRGEMLKLYREHLKEGGLLFLMLPLLCLRHSQFMTYARFTKILEAVGFRVRETKDSPKVAFFCL 245
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BLAST of mRNA_Ecto-sp13_S_contig1492.3744.1 vs. uniprot
Match: A0A835YKU5_9STRA (Putative methyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKU5_9STRA)

HSP 1 Score: 244 bits (623), Expect = 2.690e-76
Identity = 130/228 (57.02%), Postives = 161/228 (70.61%), Query Frame = 3 
Query:  153 RKPIPLVPPAIRSRKKARQIVTTFHKLEKEADEVSSS---TAPDKQARRERLERELDKMGGREAYQSASLLSVSFHNTSKWVTKQLAGKLDLRPANGEPPLRVLEVGAINTRLLDVPWLDVRAIDLKSQHPRIEERDFFSLEPAGEYDVVSSSMVINCVPTAKGRHEMLVGYRNHLRNGGHLFLVLPLLCLTKSTRTTRESFLETLSRIGFTVVAKKETPKVAFFCLR 827
            RKPIP++PP ++SRK+ARQI T FHKL K+  +V S    +  +KQ R  +L+RELD +GGREAYQSASLLSV +HNTSKWVT+QL   + +RPA G PPL +LEVGAIN RLL VPWL VRAIDL++ HPR+E  DFF L P G +D  + +MV+NCVP    R  ML   R HLR GG L L LPLLCLT S   +   F   L+  GF VVA++ +P+VAF+ LR
Sbjct:    5 RKPIPVLPPPLKSRKRARQITTAFHKLTKQQAQVKSDDGLSEREKQQRLTQLQRELDGIGGREAYQSASLLSVQYHNTSKWVTQQLE-HMGMRPAKGAPPLNLLEVGAINDRLLSVPWLRVRAIDLRAAHPRVERADFFDLAPRGAFDAAALAMVLNCVPEPARRGAMLARLRRHLRPGGALLLALPLLCLTNSRCMSAPRFAAILAHAGFDVVAERRSPRVAFYVLR 231
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BLAST of mRNA_Ecto-sp13_S_contig1492.3744.1 vs. uniprot
Match: A0A6A3HQH5_9STRA (Probable methyltransferase BMT2 homolog n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3HQH5_9STRA)

HSP 1 Score: 244 bits (622), Expect = 8.180e-76
Identity = 129/229 (56.33%), Postives = 162/229 (70.74%), Query Frame = 3 
Query:  156 KPIPLVPPAIRSRKKARQIVTTFHKLEKEADEVSSSTAPDKQARRER---LERELDKMGGREAYQSASLLSVSFHNTSKWVTKQLAGKLDLRPANGEPPLRVLEVGAINTRLLDVPWLDVRAIDLKSQHPRIEERDFFSLEPAGEYDVVSSSMVINCVPTAKGRHEMLVGYRNHLRNGGHLFLVLPLLCLTKSTRTTRESFLETLSRIGFTVVAKKETPKVAFFCLRNT 833
            K + + PP ++SR+KARQ+ TTFH+L  E D +    +   Q ++ER   + ++LD +GGR+AYQ AS+LS SFH TSKWV  QL  + +LRP   +PPLRVLEVGAINT+LL  PWLDVRAIDL S+H RIE+RDFFSL+P GE+ V+ SSMV+NCVP A  R EML  YR HL+ GG LFL+LPLLCL  S   T   F + L  +GF V   K++PKVAFFCL  T
Sbjct:   34 KALHIAPPRMKSRRKARQVTTTFHRLTHELDRLKQKPSGQAQQQQERVAEINKQLDALGGRQAYQDASILSTSFHRTSKWVF-QLLTRFELRPKAKQPPLRVLEVGAINTQLLSCPWLDVRAIDLNSRHERIEQRDFFSLQPVGEFQVLVSSMVLNCVPGADKRGEMLRLYREHLKEGGLLFLMLPLLCLRHSQFMTYARFTKILEAVGFRVRETKDSPKVAFFCLERT 261
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BLAST of mRNA_Ecto-sp13_S_contig1492.3744.1 vs. uniprot
Match: A0A662XLB4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XLB4_9STRA)

HSP 1 Score: 242 bits (618), Expect = 4.620e-75
Identity = 136/234 (58.12%), Postives = 165/234 (70.51%), Query Frame = 3 
Query:  153 RKPIPLVPPAIRSRKKARQIVTTFHKLEKEADEVS---SSTAPDK-QARRER---LERELDKMGGREAYQSASLLSVSFHNTSKWVTKQLAGKLDLRPANGEPPLRVLEVGAINTRLLDVPWLDVRAIDLKSQHPRIEERDFFSLEPAGEYDVVSSSMVINCVPTAKGRHEMLVGYRNHLRNGGHLFLVLPLLCLTKSTRTTRESFLETLSRIGFTVVAKKETPKVAFFCLRNT 833
            RKP+ + PP ++SR+KARQ+ T FH+L  E D +    +STA D  Q R E+   L   LD +GGR+AYQ AS+LS SFH TSKWV  QL  + +LRP   +PPLRVLEVGAINT+LL  PWLDVRAIDL S+H RIE+RDFFSL+P+GE+ V+ SSMV+NCVP A  R EML  YR HLR GG LFL+LPLLCL  S   T   F + L  +GF V   K++PKVAFFCL  T
Sbjct:   40 RKPLHIAPPRMKSRRKARQVTTEFHRLTHELDRLKQQKASTAADAPQQRTEKITELNARLDALGGRQAYQDASILSTSFHKTSKWVF-QLLTRFELRPKAKQPPLRVLEVGAINTQLLTCPWLDVRAIDLNSRHERIEQRDFFSLKPSGEFQVLVSSMVLNCVPGAAQRGEMLRLYRAHLREGGLLFLMLPLLCLRHSQFMTYLRFTQILEAVGFRVREAKDSPKVAFFCLERT 272
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BLAST of mRNA_Ecto-sp13_S_contig1492.3744.1 vs. uniprot
Match: H3GRM7_PHYRM (Probable methyltransferase BMT2 homolog n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GRM7_PHYRM)

HSP 1 Score: 238 bits (607), Expect = 1.740e-73
Identity = 131/241 (54.36%), Postives = 169/241 (70.12%), Query Frame = 3 
Query:  129 RMKRKLTKRKPIPLVPPAIRSRKKARQIVTTFHKLEKEADEVSSS--TAPDKQARR-ERLE---RELDKMGGREAYQSASLLSVSFHNTSKWVTKQLAGKLDLRPANGEPPLRVLEVGAINTRLLDVPWLDVRAIDLKSQHPRIEERDFFSLEPAGEYDVVSSSMVINCVPTAKGRHEMLVGYRNHLRNGGHLFLVLPLLCLTKSTRTTRESFLETLSRIGFTVVAKKETPKVAFFCLRNT 833
            +MK+    RK + + PP ++SR+KARQ+ T FH+L  E D +      AP++Q ++ ERL    ++L+++GGR+AYQ AS+L+ SFH TSKWV  QL  + + RP   +PPLRVLEVGAINT+LL  PWLDVRAIDL S+H RIE+RDFFSL+P GE+ V+ SSMV+NCVP A  R EML  YR HL+ GG LFL+LPLLCL  S   T   F + L  +GF V   K++PKVAFFCL  T
Sbjct:   27 QMKKSKKARKALHIAPPRMKSRRKARQVTTNFHRLTHELDRLKQQKPAAPEQQQQQNERLSEINKQLEQLGGRQAYQDASILNTSFHRTSKWVF-QLLTRFERRPKAKQPPLRVLEVGAINTQLLSCPWLDVRAIDLNSRHERIEQRDFFSLKPTGEFHVLVSSMVLNCVPGADKRGEMLRLYREHLKEGGLLFLMLPLLCLRHSQFMTYARFTKILEAVGFRVRETKDSPKVAFFCLERT 266
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BLAST of mRNA_Ecto-sp13_S_contig1492.3744.1 vs. uniprot
Match: W2PYR3_PHYPN (Probable methyltransferase BMT2 homolog n=14 Tax=Phytophthora TaxID=4783 RepID=W2PYR3_PHYPN)

HSP 1 Score: 238 bits (606), Expect = 1.740e-73
Identity = 127/234 (54.27%), Postives = 164/234 (70.09%), Query Frame = 3 
Query:  129 RMKRKLTKRKPIPLVPPAIRSRKKARQIVTTFHKLEKEADEVSSSTAPDKQARRE--RLERELDKMGGREAYQSASLLSVSFHNTSKWVTKQLAGKLDLRPANGEPPLRVLEVGAINTRLLDVPWLDVRAIDLKSQHPRIEERDFFSLEPAGEYDVVSSSMVINCVPTAKGRHEMLVGYRNHLRNGGHLFLVLPLLCLTKSTRTTRESFLETLSRIGFTVVAKKETPKVAFFCL 824
            ++K+    RK + + PP ++SR+KARQ+ T FH+L  E D +    + D+  ++    + R+L+++GGR+AYQ AS+LS SFH TSKWV  QL  + +LRP   +PPLRVLEVGAINT+LL  PWLDVRAIDL S+H RIE+RDFFSL+P GE+ VV SSMV+NCVP A  R EML  YR HL+ GG LFL+LPLLCL  S   T   F + L  +GF V   K++PKVAF CL
Sbjct:   20 QVKKAKKSRKALHIAPPRMKSRRKARQVTTNFHRLTHELDRLKQHKSLDESQKQRIAEINRQLEELGGRQAYQDASILSTSFHRTSKWVF-QLLTRFELRPKAKQPPLRVLEVGAINTQLLSCPWLDVRAIDLNSRHERIEQRDFFSLKPEGEFQVVVSSMVLNCVPGADKRGEMLRLYREHLKEGGLLFLMLPLLCLRHSQFMTYARFAKILEAVGFRVRETKDSPKVAFLCL 252
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BLAST of mRNA_Ecto-sp13_S_contig1492.3744.1 vs. uniprot
Match: W4HD04_9STRA (Probable methyltransferase BMT2 homolog n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HD04_9STRA)

HSP 1 Score: 234 bits (598), Expect = 3.570e-72
Identity = 130/251 (51.79%), Postives = 169/251 (67.33%), Query Frame = 3 
Query:   84 WTSPRRAPTAVGWPTRMKRKLTKRKPIPLVPPAIRSRKKARQIVTTFHKLEKEADEVSSSTAP---DKQARRERLERELDKMGGREAYQSASLLSVSFHNTSKWVTKQLAGKLDLRPANGEPPLRVLEVGAINTRLLDVPWLDVRAIDLKSQHPRIEERDFFSLEPAGEYDVVSSSMVINCVPTAKGRHEMLVGYRNHLRNGGHLFLVLPLLCLTKSTRTTRESFLETLSRIGFTVVAKKETPKVAFFCLR 827
            WT P+R  T    P+  K+  +K + +P+ PP ++SR++AR++ T FH++  E   + SS A    D   R + LE  L +MGGREAYQ AS+LS S H TS+WV  QL  K +LRP     PLRVLEVGAINT+L+  PWLDV AIDL +++P+I++ DFF L+    +DVV SSMVINCVPT + R EML     HL + GHLFL+LPLLCLT ST  T + F   L RIGFT+  KKETPK+AF+CL+
Sbjct:   13 WTCPKRHTTNKSMPSASKK--SKLRKVPIGPPPVKSRRRARELTTEFHRVTHELQRLKSSKAKKDDDASQRVQELEHRLKEMGGREAYQDASILSTSLHKTSRWVF-QLLTKFELRPGKKMSPLRVLEVGAINTQLVVCPWLDVLAIDLIARNPKIQQIDFFDLDLTKRFDVVVSSMVINCVPTPEKRGEMLQRTWTHLNDDGHLFLMLPLLCLTNSTYMTVDHFETILKRIGFTIRDKKETPKIAFYCLQ 260
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BLAST of mRNA_Ecto-sp13_S_contig1492.3744.1 vs. uniprot
Match: A0A0P1AR11_PLAHL (25S rRNA (Adenine(2142)-N(1))-methyltransferase, Bmt2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AR11_PLAHL)

HSP 1 Score: 234 bits (597), Expect = 4.060e-72
Identity = 125/237 (52.74%), Postives = 164/237 (69.20%), Query Frame = 3 
Query:  153 RKPIPLVPPAIRSRKKARQIVTTFHKLEKEADEVSSSTAPDKQARRERL---ERELDKMGGREAYQSASLLSVSFHNTSKWVTKQLAGKLDLRPANGEPPLRVLEVGAINTRLLDVPWLDVRAIDLKSQHPRIEERDFFSLEPAGEYDVVSSSMVINCVPTAKGRHEMLVGYRNHLRNGGHLFLVLPLLCLTKSTRTTRESFLETLSRIGFTVVAKKETPKVAFFCLRNTPLEARDV 854
            RK + + PP ++SR+KAR ++T FH+L  E D +      + + R+ R+    +EL ++GGR+AYQ AS+LS SFH TSKWV + L  + +LRP   +PPL VLEVGAINT+LL  PWL+VRAIDLKS+H RIE+ DFFSL+PAGE+ +V SSMV+NCVP A  R +ML  YR HL +GG LFL+LPLLCL  S   T   F + L  +GF V   K++PKVAFFCL  T +  +D 
Sbjct:   28 RKALHIAPPRMKSRRKARNVITKFHRLTHELDRLEQQKLDEVETRKLRIAEINQELIELGGRQAYQDASILSTSFHRTSKWVFRLLT-RFELRPKAKQPPLPVLEVGAINTQLLSCPWLNVRAIDLKSRHERIEQCDFFSLKPAGEFQIVVSSMVLNCVPGAVKRGQMLRLYREHLMDGGLLFLMLPLLCLRHSKFMTYSRFTKILEAVGFRVRETKDSPKVAFFCLERTEIFNKDA 263
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BLAST of mRNA_Ecto-sp13_S_contig1492.3744.1 vs. uniprot
Match: K3X5P0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X5P0_GLOUD)

HSP 1 Score: 234 bits (596), Expect = 8.350e-72
Identity = 127/247 (51.42%), Postives = 164/247 (66.40%), Query Frame = 3 
Query:  153 RKPIPLVPPAIRSRKKARQIVTTFHKLEKEADEVSSSTA---PDKQARRERLERELDKMGGREAYQSASLLSVSFHNTSKWVTKQLAGKLDLRPANGEPPLRVLEVGAINTRLLDVPWLDVRAIDLKSQHPRIEERDFFSLEPAGEYDVVSSSMVINCVPTAKGRHEMLVGYRNHLRNGGHLFLVLPLLCLTKSTRTTRESFLETLSRIGFTVVAKKETPKVAFFCLRNTP--LEARDVGGSSLATK 878
            RK + +  P ++SR+KARQ+ T FH+L  E D++    A    +KQ +   L  ++D +GGR AYQ AS+LS SFH TSKWV  QL  K  LRP + EPPLRVLEVGAINT+LL  PWL+VRAIDL S+H RIE+RDFF L+  GE+ V+ SSMV+NCVP A  R +ML  Y  HL+  GHLFL++PLLCL  S   T   F+E L  +GF V   K++PKV+FFCL   P  +EA  +  +S   +
Sbjct:   31 RKALHIAAPKMKSRRKARQVTTDFHRLTHEVDKIKKDKALSGAEKQTKLAELNAQIDAIGGRTAYQDASILSTSFHKTSKWVF-QLLTKFGLRPKSKEPPLRVLEVGAINTQLLTCPWLNVRAIDLNSRHERIEQRDFFDLKAEGEFQVLVSSMVLNCVPDAVSRGKMLKLYYEHLQPSGHLFLMIPLLCLRNSKFMTYARFVEILKAVGFFVKETKDSPKVSFFCLEKKPEAIEAATLANASTTVR 276
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1492.3744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKK2_ECTSI2.790e-18196.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2P4Y049_9STRA6.750e-7754.92Uncharacterized protein n=2 Tax=Phytophthora palmi... [more]
A0A835YKU5_9STRA2.690e-7657.02Putative methyltransferase-domain-containing prote... [more]
A0A6A3HQH5_9STRA8.180e-7656.33Probable methyltransferase BMT2 homolog n=3 Tax=Ph... [more]
A0A662XLB4_9STRA4.620e-7558.12Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
H3GRM7_PHYRM1.740e-7354.36Probable methyltransferase BMT2 homolog n=1 Tax=Ph... [more]
W2PYR3_PHYPN1.740e-7354.27Probable methyltransferase BMT2 homolog n=14 Tax=P... [more]
W4HD04_9STRA3.570e-7251.79Probable methyltransferase BMT2 homolog n=7 Tax=Ap... [more]
A0A0P1AR11_PLAHL4.060e-7252.7425S rRNA (Adenine(2142)-N(1))-methyltransferase, B... [more]
K3X5P0_GLOUD8.350e-7251.42Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1492contigEcto-sp13_S_contig1492:6684..8648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score512.7
Seed ortholog evalue1.1e-142
Seed eggNOG ortholog2880.D7FKK2
Model size1028
KEGG koko:K18849
Hectar predicted targeting categorymitochondrion
Exons4
EggNOG free text desc.25S rRNA (adenine(2142)-N(1))-methyltransferase, Bmt2
EggNOG OGs297K0@1,2REJX@2759
Ec32 ortholog description25S rRNA (adenine(2142)-N(1))-methyltransferase, Bmt2
Ec32 orthologEc-12_001780.1
EC2.1.1.286
Cds size834
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1492.3744.1prot_Ecto-sp13_S_contig1492.3744.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1492 6815..8585 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462796.092732-UTR-Ecto-sp13_S_contig1492:6683..68141681462796.092732-UTR-Ecto-sp13_S_contig1492:6683..6814Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1492 6684..6814 +
1681462796.1605864-UTR-Ecto-sp13_S_contig1492:8585..86481681462796.1605864-UTR-Ecto-sp13_S_contig1492:8585..8648Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1492 8586..8648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462796.1034439-CDS-Ecto-sp13_S_contig1492:6814..68531681462796.1034439-CDS-Ecto-sp13_S_contig1492:6814..6853Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1492 6815..6853 +
1681462796.118082-CDS-Ecto-sp13_S_contig1492:7130..74181681462796.118082-CDS-Ecto-sp13_S_contig1492:7130..7418Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1492 7131..7418 +
1681462796.1392107-CDS-Ecto-sp13_S_contig1492:7787..79301681462796.1392107-CDS-Ecto-sp13_S_contig1492:7787..7930Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1492 7788..7930 +
1681462796.1499224-CDS-Ecto-sp13_S_contig1492:8221..85851681462796.1499224-CDS-Ecto-sp13_S_contig1492:8221..8585Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1492 8222..8585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1492.3744.1

>prot_Ecto-sp13_S_contig1492.3744.1 ID=prot_Ecto-sp13_S_contig1492.3744.1|Name=mRNA_Ecto-sp13_S_contig1492.3744.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=278bp
MKRKLTKRKPIPLVPPAIRSRKKARQIVTTFHKLEKEADEVSSSTAPDKQ
ARRERLERELDKMGGREAYQSASLLSVSFHNTSKWVTKQLAGKLDLRPAN
GEPPLRVLEVGAINTRLLDVPWLDVRAIDLKSQHPRIEERDFFSLEPAGE
YDVVSSSMVINCVPTAKGRHEMLVGYRNHLRNGGHLFLVLPLLCLTKSTR
TTRESFLETLSRIGFTVVAKKETPKVAFFCLRNTPLEARDVGGSSLATKE
GGTRGAGAAKGTSRKRNRGANDFAVSP*
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mRNA from alignment at Ecto-sp13_S_contig1492:6684..8648+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1492.3744.1 ID=mRNA_Ecto-sp13_S_contig1492.3744.1|Name=mRNA_Ecto-sp13_S_contig1492.3744.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1965bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1492:6684..8648+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCGCTTGCGTGTGTCACGTCATCCGCAGCCCCCTTCTCTCTCCTGCTTT
GCAGAAGACGAGAGCACTGACTCTTTTTTTGGTTGGACTTCCCCTCGGCG
TGCTCCAACGGCAGTGGGCTGGCCAACAAGGATGAAGCGCAAGCTCACCA
AGAGAAAACCAATCCCCTTGGTAAGATAATATTTGCTGAATTTGTTGTGG
TGGCGGTGGACTGAACCTCACTGGTGATGCTTTTGTTCACGCACTCGCCT
GTTTACTGCGCCTTTGCATTCATACATAAAGTTACGTAGGTTCCGCCCGT
ACAACGTAGTGAAGGGGTCGACCATCCACCTACCTTGCCTACTGCTGTAG
GTCAATGTGTAGTTGAACCCCGACACACCCATCCCTGGCCACGCCAAACG
TTCCCGATCTCCCATGTATGTAACTTCCTTCCCAAACACCGCACCAGGTC
CCGCCGGCCATCCGATCGAGGAAAAAAGCGAGGCAGATCGTCACCACCTT
CCACAAACTAGAGAAGGAGGCCGACGAGGTGTCGTCGAGTACTGCCCCCG
ACAAACAGGCACGGCGTGAGCGATTAGAGCGCGAGCTGGACAAAATGGGA
GGGAGGGAGGCTTACCAGAGCGCAAGCTTGTTAAGCGTCAGCTTTCACAA
CACTTCAAAGTGGGTTACGAAGCAGCTCGCGGGCAAGTTGGACTTGCGGC
CGGCAAACGGAGAACCGCCACTGCGGGTGCTTGAGGTGACGAGGCGGATG
TACAACAGCAGAAATGGATGCTCTGGTGTTGTTGGGACAGGAAGTTCAGG
TCATTGTGAGACTACCTCTACAAGAATACTTCCGGACGAAGAGCCGGCTG
TATTCAGGTCATTGTGGGTTTAGAATAATGCTTAAAAGCTTTCAAATAGG
TTGTTCCGACCAATCTTCCCGGGCCCCTGCCCCGTCGTCGAGAACCGCCC
TTCCTTCTGGTCCGTCCCGGTTCTAGATGTGCCGCCACAGGGTTCAAATG
GGCAACAGACGTGCAAAAGTACCGAGAGTGTAGCCCCGTTCCCCCACCCG
CCGTCTGATGCTGCTGAACTTTTCTTCGAATCGGTTGCTCGCGTTTTGGG
TCAGGTGGGTGCCATCAACACTCGTCTGTTGGACGTGCCGTGGCTGGACG
TGAGGGCGATCGACCTCAAGTCGCAGCACCCACGGATCGAGGAGCGTGAC
TTCTTTTCTTTGGAGCCAGCGGGAGAATACGATGTGGTTTCTTCAAGGTG
AAAGAAAGCATGCATTGGAGTGACCAAGTGCAGGTGGCACGTCCGTGTCT
GATGACACGTGGATTTTTGGCGTGTACACCTGCCCTGCACATGTTCACTT
GCGATATACCATGCCCCTCCTGCTGCCGCTGGGTTGGGGTACTATGCTGC
GCATTGTTGTAAGTGTTTGCGGTAGCTTGATTTTGAGGGAGCGCATCCGG
TGATCGCATGTGGAAGAATTGGTTTCAATGCGTCTTTGCACGTGCGACGT
GTTGTGGACGTCTGACTGTTTCCTCTTGACCGACGCAGCATGGTGATCAA
CTGTGTCCCAACGGCCAAGGGCAGGCACGAGATGCTGGTGGGGTACCGAA
ATCACCTTCGCAACGGCGGGCACCTCTTCCTCGTTCTCCCCCTCCTCTGC
CTCACGAAGAGCACACGGACTACGCGAGAGTCTTTCTTGGAAACCCTCTC
GCGAATTGGGTTCACGGTCGTCGCGAAAAAGGAAACCCCAAAAGTGGCGT
TTTTTTGCTTGAGGAACACACCGCTGGAGGCCCGGGACGTTGGCGGGTCC
TCGCTAGCCACGAAAGAAGGCGGGACGAGGGGTGCGGGAGCGGCGAAGGG
GACCTCTAGAAAGAGAAATCGTGGAGCAAATGACTTTGCTGTATCACCGT
AGCTCTATTGCGTTGCCCGATGTGCAGTGGTGTTTACTCTCTGACTTTCG
TAAAATGGAATCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1492:6684..8648+

>mRNA_Ecto-sp13_S_contig1492.3744.1 ID=mRNA_Ecto-sp13_S_contig1492.3744.1|Name=mRNA_Ecto-sp13_S_contig1492.3744.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=834bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1492:6684..8648+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCGCAAGCTCACCAAGAGAAAACCAATCCCCTTGGTCCCGCCGGC
CATCCGATCGAGGAAAAAAGCGAGGCAGATCGTCACCACCTTCCACAAAC
TAGAGAAGGAGGCCGACGAGGTGTCGTCGAGTACTGCCCCCGACAAACAG
GCACGGCGTGAGCGATTAGAGCGCGAGCTGGACAAAATGGGAGGGAGGGA
GGCTTACCAGAGCGCAAGCTTGTTAAGCGTCAGCTTTCACAACACTTCAA
AGTGGGTTACGAAGCAGCTCGCGGGCAAGTTGGACTTGCGGCCGGCAAAC
GGAGAACCGCCACTGCGGGTGCTTGAGGTGGGTGCCATCAACACTCGTCT
GTTGGACGTGCCGTGGCTGGACGTGAGGGCGATCGACCTCAAGTCGCAGC
ACCCACGGATCGAGGAGCGTGACTTCTTTTCTTTGGAGCCAGCGGGAGAA
TACGATGTGGTTTCTTCAAGCATGGTGATCAACTGTGTCCCAACGGCCAA
GGGCAGGCACGAGATGCTGGTGGGGTACCGAAATCACCTTCGCAACGGCG
GGCACCTCTTCCTCGTTCTCCCCCTCCTCTGCCTCACGAAGAGCACACGG
ACTACGCGAGAGTCTTTCTTGGAAACCCTCTCGCGAATTGGGTTCACGGT
CGTCGCGAAAAAGGAAACCCCAAAAGTGGCGTTTTTTTGCTTGAGGAACA
CACCGCTGGAGGCCCGGGACGTTGGCGGGTCCTCGCTAGCCACGAAAGAA
GGCGGGACGAGGGGTGCGGGAGCGGCGAAGGGGACCTCTAGAAAGAGAAA
TCGTGGAGCAAATGACTTTGCTGTATCACCGTAG
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