mRNA_Ecto-sp13_S_contig14907.3733.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14907.3733.1
Unique NamemRNA_Ecto-sp13_S_contig14907.3733.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14907.3733.1 vs. uniprot
Match: D7G9C2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9C2_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 3.190e-41
Identity = 93/132 (70.45%), Postives = 95/132 (71.97%), Query Frame = 1 
Query:  181 GADEGQLAMTSDGEAAFQYLERNTSPEGRRLEESETVEDTAAIEERFALIEAALEDRQKLAKGLQTYTFGQRVAAREHDREEIEVLKKQGILIGAHIPMGPSGLTLDRSTIGTFGGFAISLLDAAELARANR 576
            GADEGQLAMTSDGEAAFQ LERNTSPEGR+LE +ETVEDTAAIEE                                  REEIEVLKKQGILIGAHIPMGPSGL LDRSTIGTFGGFAISLLDAAELARANR
Sbjct:  148 GADEGQLAMTSDGEAAFQDLERNTSPEGRKLEVAETVEDTAAIEE----------------------------------REEIEVLKKQGILIGAHIPMGPSGLILDRSTIGTFGGFAISLLDAAELARANR 245
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14907.3733.1 vs. uniprot
Match: A0A6H5J8U3_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8U3_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 7.170e-38
Identity = 87/134 (64.93%), Postives = 91/134 (67.91%), Query Frame = 1 
Query:  181 GADEGQLAMTSDGEAAFQYLERNTSPEGRRLEESETVEDTAAIEERFALIEAALEDRQKLAKGLQTYTFGQRVAAREHDREEIEVLKKQGILIGAHIPMGPSGLTLDRSTIGTFGGFAISLLDAAELARANRVA 582
            GADEG+LAMTSDGE AFQ  +RNTSP GR+LEE  T EDTAAIEE                                  REEIEVLK+QGILIG HIPMGPSGL LDRSTIGTFGGFAISLLDAAELARANRVA
Sbjct:  148 GADEGELAMTSDGEMAFQNFQRNTSPGGRKLEEGGTAEDTAAIEE----------------------------------REEIEVLKRQGILIGVHIPMGPSGLVLDRSTIGTFGGFAISLLDAAELARANRVA 247
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14907.3733.1 vs. uniprot
Match: A0A482S2K8_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S2K8_9ARCH)

HSP 1 Score: 54.7 bits (130), Expect = 1.630e-5
Identity = 33/91 (36.26%), Postives = 52/91 (57.14%), Query Frame = 1 
Query:  304 AIEERFALIEAALEDRQKLAKGLQTYTFGQRVAAREHDREEIEVLKKQGILIGAHIPMGPSGLTLDRSTIGTFGGFAISLLDAAELARANR 576
            A+E++   + A +E + + A+ L  Y   Q+  A+  +  E E LK+QGI++G HIP  PS L LD S I  +  F+ ++L A +L   NR
Sbjct:    4 AVEDKIKAVYAEIERKTREAEELGKYLNTQQQLAKLAEETEEEDLKRQGIIVGQHIPSLPSRLDLDASRIAEYDSFSSTVLVAKDLMVQNR 94
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14907.3733.1 vs. uniprot
Match: A0A1V9Z2V2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z2V2_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 7.510e-5
Identity = 38/105 (36.19%), Postives = 53/105 (50.48%), Query Frame = 1 
Query:  289 VEDTAAIE--------ERFALIEAALEDRQKLAKGLQTYTFGQRVAAREHDREEIEVLKKQGILIGAHIPMGPSGLTLDRSTIGTFGGFAISLLDAAELARANRV 579
            VE+T A E        +R A +EA L  + K A  L      +R  A E D  +   L KQG+++ A IP+GPS   LD + +  FG FA SL+ A  L + N +
Sbjct:   80 VEETKATEHPYLVFGRQRVAEVEADLRAKVKQATELMALLEARRREALEKDETQARELIKQGLVVKAQIPIGPSNFRLDPTELEPFGEFAESLIQARTLLQENHL 184
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14907.3733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G9C2_ECTSI3.190e-4170.45EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5J8U3_9PHAE7.170e-3864.93EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A482S2K8_9ARCH1.630e-536.26Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A1V9Z2V2_9STRA7.510e-536.19Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14907contigEcto-sp13_S_contig14907:474..2259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score159.5
Seed ortholog evalue1.6e-36
Seed eggNOG ortholog2880.D7G9C2
Preferred nameDLEC1
Model size582
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008285,GO:0042127,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0065007
Exons4
EggNOG free text desc.negative regulation of cell proliferation
EggNOG OGs28IDE@1,2QQQ5@2759
Cds size582
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462795.1873503-CDS-Ecto-sp13_S_contig14907:473..6541681462795.1873503-CDS-Ecto-sp13_S_contig14907:473..654Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14907 474..654 +
1681462795.200411-CDS-Ecto-sp13_S_contig14907:921..10571681462795.200411-CDS-Ecto-sp13_S_contig14907:921..1057Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14907 922..1057 +
1681462795.2101355-CDS-Ecto-sp13_S_contig14907:1374..14761681462795.2101355-CDS-Ecto-sp13_S_contig14907:1374..1476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14907 1375..1476 +
1681462795.2258558-CDS-Ecto-sp13_S_contig14907:2096..22591681462795.2258558-CDS-Ecto-sp13_S_contig14907:2096..2259Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14907 2097..2259 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14907.3733.1prot_Ecto-sp13_S_contig14907.3733.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14907 474..2259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14907.3733.1

>prot_Ecto-sp13_S_contig14907.3733.1 ID=prot_Ecto-sp13_S_contig14907.3733.1|Name=mRNA_Ecto-sp13_S_contig14907.3733.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=194bp
MSTPDPTTSHDGGEAQDPNIKPKPRQSSNNVEGAGAAKGNSTDAAGIDAS
EGVEVTETDEGADEGQLAMTSDGEAAFQYLERNTSPEGRRLEESETVEDT
AAIEERFALIEAALEDRQKLAKGLQTYTFGQRVAAREHDREEIEVLKKQG
ILIGAHIPMGPSGLTLDRSTIGTFGGFAISLLDAAELARANRVA
back to top

mRNA from alignment at Ecto-sp13_S_contig14907:474..2259+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14907.3733.1 ID=mRNA_Ecto-sp13_S_contig14907.3733.1|Name=mRNA_Ecto-sp13_S_contig14907.3733.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1786bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14907:474..2259+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCACACCAGACCCGACAACTTCCCATGATGGCGGAGAAGCGCAAGA
TCCAAACATCAAGCCGAAACCCCGTCAATCATCGAACAACGTTGAGGGTG
CCGGGGCGGCTAAAGGGAACTCCACCGACGCGGCGGGGATTGATGCCTCA
GAGGGGGTAGAGGTTACAGAAACCGACGAGGGTGAGCCGATAGACTCTGA
CGCAACGAACTCGGTGTTGGTTTAGGTAGCGGTTGTCTCTATTGGTTGAT
ACAACACTTCCATACCTGTATGGCAGTGTTTGAAACACGAGGATTAATCA
ACGAGTAACGCTGAGGGCGTGCCTCAAAAAGAATTAAATGTATTCGAGTT
CTCCTTCTGATCAGGATTAACGAGAGCATGTTCCTATGACAGGGGCATAC
TGTGGCAATGAATCGTTGTTGCTGAAGTCTGGTCCTTGCCACCACCAGGT
GCTGATGAGGGGCAACTGGCCATGACAAGCGATGGGGAGGCGGCGTTTCA
ATATCTTGAACGAAACACGTCTCCAGAGGGGAGAAGACTGGAAGAGAGCG
AAACAGTCGAGGACACGGCAGCAATCGAAGAGAGGTTGGTGTTCTTCTTT
CGGAACGCACGAGGAGAAGGGGGGATTTGTACCAAAGCGTTTGGGGTGAC
AATTTTGCTGGGGATACCTCAAGGATAACTTAGCGATGAGTAGTGCCGCA
ATTTTATTGTTTTTACCTCGCCGCCGACAAGTTGATGGTAGTGTTTTGAG
CGTTATCACTATGAAAATTAGCAACACCTACCTAACGTAGTATAATAGTA
TGGTCGCTTCGGCCTCCAATTGGAAGCCAATGTCCATGTCCTATGAACGC
GAATGTCCGTATGCCCCGCCATACCGATCTCAATTTCAAATCTGTAACAA
GGTTTGCGCTGATTGAAGCTGCCTTGGAAGATCGCCAAAAGCTGGCCAAG
GGGCTTCAGACATACACGTTTGGGCAGAGGGTAGCAGCGAGGGAACACGA
CAGGTATTGGACATTATTGGCACCGCAAATACAGCACCTCTTGCTGGTGT
TGTTGGAGGTGTTAGAATGGTGGTCTTCACGGTGTGCAGGCTTTGTCAGT
ACCCTTGGAGACAGCTGACAACCACCTTGTTGTCACGCGTCAACCCTGAG
GTATTCGTCATCGTGCTTAGTGAGAGAATAAGAATCGTAAACAACGCTGG
AAAGCTCCCTGCCACCGGTGGACATTACCGCAACAAAATCCGGACAAAGC
CCTTTTTTTCTTGCGTCCGTTCTTGAATCTGTGCTTGGTCATAGAATTCG
TTGGCGTTCTTGTTGTGATTACTGTTTTCGGCTGAATATTTTCGCTGCCC
CTCCTGAGCAAACAGAATAGTGAGACATTTTTGGCGGGTATGTAAAGATG
ACCAATCGTCGATCGCTCGCCGACGACAACCTGAAGCAATAGTTTCTCGC
GATTCCGACCTTTTCACACATGCCGCACGGCAACATCCTCAACCTTGTTT
CTCCCCCACATGAGTGCGCATGGAAAGCACCAGTCGCCCGTTTTGTGCTT
TTGATTGCTTTGAATCGACGAACTTTCTGCTCAGCATACGCAACCACCTC
CCTGTCCAACTATGTACCACCAGGGAGGAGATAGAAGTTCTAAAGAAGCA
AGGGATTCTTATTGGGGCACACATCCCGATGGGTCCCAGCGGATTGACTC
TGGACCGTTCCACGATCGGCACGTTCGGAGGGTTCGCCATTTCTCTACTG
GATGCGGCGGAACTTGCTCGGGCAAACCGAGTGGCT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14907:474..2259+

>mRNA_Ecto-sp13_S_contig14907.3733.1 ID=mRNA_Ecto-sp13_S_contig14907.3733.1|Name=mRNA_Ecto-sp13_S_contig14907.3733.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=582bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14907:474..2259+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCACACCAGACCCGACAACTTCCCATGATGGCGGAGAAGCGCAAGA
TCCAAACATCAAGCCGAAACCCCGTCAATCATCGAACAACGTTGAGGGTG
CCGGGGCGGCTAAAGGGAACTCCACCGACGCGGCGGGGATTGATGCCTCA
GAGGGGGTAGAGGTTACAGAAACCGACGAGGGTGCTGATGAGGGGCAACT
GGCCATGACAAGCGATGGGGAGGCGGCGTTTCAATATCTTGAACGAAACA
CGTCTCCAGAGGGGAGAAGACTGGAAGAGAGCGAAACAGTCGAGGACACG
GCAGCAATCGAAGAGAGGTTTGCGCTGATTGAAGCTGCCTTGGAAGATCG
CCAAAAGCTGGCCAAGGGGCTTCAGACATACACGTTTGGGCAGAGGGTAG
CAGCGAGGGAACACGACAGGGAGGAGATAGAAGTTCTAAAGAAGCAAGGG
ATTCTTATTGGGGCACACATCCCGATGGGTCCCAGCGGATTGACTCTGGA
CCGTTCCACGATCGGCACGTTCGGAGGGTTCGCCATTTCTCTACTGGATG
CGGCGGAACTTGCTCGGGCAAACCGAGTGGCT
back to top