mRNA_Ecto-sp13_S_contig14906.3732.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14906.3732.1
Unique NamemRNA_Ecto-sp13_S_contig14906.3732.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14906.3732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14906contigEcto-sp13_S_contig14906:1461..3846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size264
Hectar predicted targeting categoryother localisation
Exons2
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462795.1267707-CDS-Ecto-sp13_S_contig14906:1460..16561681462795.1267707-CDS-Ecto-sp13_S_contig14906:1460..1656Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14906 1461..1656 +
1681462795.1369739-CDS-Ecto-sp13_S_contig14906:3778..38011681462795.1369739-CDS-Ecto-sp13_S_contig14906:3778..3801Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14906 3779..3801 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462795.1467383-UTR-Ecto-sp13_S_contig14906:3801..38461681462795.1467383-UTR-Ecto-sp13_S_contig14906:3801..3846Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14906 3802..3846 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14906.3732.1prot_Ecto-sp13_S_contig14906.3732.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14906 1461..3801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14906.3732.1

>prot_Ecto-sp13_S_contig14906.3732.1 ID=prot_Ecto-sp13_S_contig14906.3732.1|Name=mRNA_Ecto-sp13_S_contig14906.3732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp
HPHNPHAVAVFRNQDNRSDARIVIRDWYPTRIGIFSCPDLKSTWRGSSGT
CSHRREEEALSPDLTALNGGAY*
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mRNA from alignment at Ecto-sp13_S_contig14906:1461..3846+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14906.3732.1 ID=mRNA_Ecto-sp13_S_contig14906.3732.1|Name=mRNA_Ecto-sp13_S_contig14906.3732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2386bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14906:1461..3846+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACCCACACAACCCACATGCAGTTGCTGTATTCAGGAACCAGGACAACCG
CTCCGACGCACGTATCGTCATACGGGATTGGTACCCAACACGTATCGGCA
TCTTCAGCTGTCCGGACTTAAAATCCACGTGGAGAGGCAGCAGCGGTACA
TGCTCGCACAGAAGAGAAGAAGAGGCGTTGTCGCCTGATCTCACAGGTGG
GCGTACCACCACTTGGGGGCGTCGTTGCATATATATCTGATCCACAATGC
AGGCGTACCGGTTGTAATCTCCCGTAGACTGCTTTGTTTGGTACACTGGT
CACGACGAACTCACAAGCCCGCATCAACCACACCACAATATGGTTGTATC
ATGTCCGAGAGTCGGTGATGCGCAAGCCGCTTGTACAACGTGAGGATCTC
CAAGAGGAGTGCCATCATCTGTTGATGACATAATACGTAGCTGCTGCTTC
GTTGAAACTTGACCGTTGAAAACTTGGATGAAATGTACCGCACGTGTCGC
CATCCCGAGCTGTTGGTTCTTGCCGAGAGGTGCGAACGCACCCAATCTAA
ACTGTCTATAGAGGTACAATGCGCACAGTCCACGCAAGCAAGCGTCCAGT
GCAAGTAGCAACTCGAGAGGTTACCAATAAACGAAATCCTCATCCTATCG
GTGTTTAGGGGCAAAGTTCCTGCCGGTGATGGTGATCTGGATGCCGGCCA
ATTGTGCTGGCTATAAAACCTGACGCAATAAACAGGTCAATTGTGTATTA
CCCTTTGTATTTAGATAAAATTCTATGCGGTAACAAATAATTGGCCAATC
ACCTCTTGTCGTATGCAAGCGATTCAAAAAGTAACAGTCCGTGAAGAGCT
GTACTGGTAATACGGTAGGTGTACCGTCACGTGGAAGCTGTCGATGCACG
TCGCTAGGTCACATGCCTATTGTGGCGTGTTCCTTCGTTAGGTGGTAAAA
TTTTTGTCCCGCCGGAGGACAGGTGGATATCGAGGATCGGTAGGACCACA
AGGTATGCAACGCTACATACACATGAACTCAAGAGTTTTGTTGACACTCG
TGAAATAAATATGGATAGAGATGAGATCGGTATGTTTTGTGTGCGCAAGA
AAGAAGCAGAGGCAGAAAGATACAAGCTGGTTTACGGAAATGAGCCCAAA
TTATTTGTTCAACCACAGCCGCCAGACGATGTACACAATATTGACACATA
TTGTATCGTAGTGACCCCCATTAGCAAGGGAACAAATCGTCGTGCCCGGA
ATTTCAATCAGAGCCGTGGCCACGATGCAATGGGCATAAATGTGTCTCAG
CCAATCAGAAGCCTTCAAAATGATGTAAAACTAGTAATGCGTGCAAACCA
ACTTGTGCAAACCCGCACCTCCCACCTCTTTCCACCGCAGTTTGCAACAA
AGCAATCAATGACCATGCTCTAAACAAAAGAAAAATTGAAAGCGGTTCCT
GTGGAAGCGAGTTAGAACGACCCTCATGCCCAAAATGAATGGTGGTTCGA
CTGCCGCCATTTGGCGTCGTCCATTTTCCATGGATTGTACATGTGGGAAG
TAACACACACGGAGGGTCTCGTGTTGGATTGCGTTGTATATATCGAAGGA
AATATTGAACAGTCCTCAGATTTTGATAGCTAGCATGGTGCAACAAAGTT
CCACAAACCGTAAAAAAAAATAAGGCCATGTTTGCACTCCTTACCGGCGT
ATAGGGGTCCCCATGTATGGAACCCCCGAAAGCCGGATACAAATACACGA
ATTCCACTGGCTTTTGTCGTTCGCTCCGGGATAGTCCAATGACCCTTTCC
AAGAAGTTTTGTAGTAACACTTGTAAAACTGACGCGGCACGGGGCTTACC
AGCGAAAAAGGGGCCACGCGGATCGGATTCTTTGCTCATGTCAAGTAGTT
TGGGGAAAATCACGCTTAGTAAAACTTCATGGCACAAAAGCTGAAAAATT
CACGTCGTTTTTAGGAGTTTGACTTTGAAACTTCGCACACATTTTCGTTG
GGTTTGTACGAAAAGCTGTGCGGCGAGGCCTTTTTCATGTTCTTCGATGG
TCGCCGGTTATTCGAGGTCCCATGATCCCCGAACATTCTTTAGGCATTGC
CTTTTGCAAGCGAATTATGAAAGCGCATACATACAGTATGAACTGACTGT
CGGTGTCACCCCTTTTCTAAGCACGAGTTGCCAAGAGAGCGCCAACGCAC
CTAGGAGGAGACAAGCAATATTCGGGAATATGCCGTCGCTGTGGATAACA
AGCTAACACGACATTTTTTTGCGTTCGTCTTCTCCTCTTCTGGTTGGACC
GCATGGACATGACACAAGCACTCAACGGGGGTGCATATTGATGGGTGGAT
GGTCAACGGCAACGTGGTGGAATGAAGAAAGCGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14906:1461..3846+

>mRNA_Ecto-sp13_S_contig14906.3732.1 ID=mRNA_Ecto-sp13_S_contig14906.3732.1|Name=mRNA_Ecto-sp13_S_contig14906.3732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14906:1461..3846+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACCCACACAACCCACATGCAGTTGCTGTATTCAGGAACCAGGACAACCG
CTCCGACGCACGTATCGTCATACGGGATTGGTACCCAACACGTATCGGCA
TCTTCAGCTGTCCGGACTTAAAATCCACGTGGAGAGGCAGCAGCGGTACA
TGCTCGCACAGAAGAGAAGAAGAGGCGTTGTCGCCTGATCTCACAGCACT
CAACGGGGGTGCATATTGA
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