mRNA_Ecto-sp13_S_contig14902.3730.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14902.3730.1
Unique NamemRNA_Ecto-sp13_S_contig14902.3730.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14902.3730.1 vs. uniprot
Match: A0A6H5LKY2_9PHAE (AAA_lid_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKY2_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 2.360e-36
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 EVDLEDYVNRPEKVSAADISAIAQEAGLQAVRKNRYVVLGKDLDKAYKKHVNKHDTEHAFYSM 189
            EVDLEDYVNRPEKVSAADISAIAQEAGLQAVRKNRYVVLGKDLDKAYKKHVNKHDTEHAFYSM
Sbjct:   19 EVDLEDYVNRPEKVSAADISAIAQEAGLQAVRKNRYVVLGKDLDKAYKKHVNKHDTEHAFYSM 81
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14902.3730.1 vs. uniprot
Match: D7G6R8_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R8_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 6.670e-33
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 EVDLEDYVNRPEKVSAADISAIAQEAGLQAVRKNRYVVLGKDLDKAYKKHVNKHDTEHAFYSM 189
            EVDLEDYVNRPEKVSAADISAIAQEAGLQAVRKNRYVVLGKDLDKAYKKHVNKHDTEHAFYSM
Sbjct:  353 EVDLEDYVNRPEKVSAADISAIAQEAGLQAVRKNRYVVLGKDLDKAYKKHVNKHDTEHAFYSM 415
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14902.3730.1 vs. uniprot
Match: A0A6V1PIA9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PIA9_HETAK)

HSP 1 Score: 107 bits (267), Expect = 3.800e-26
Identity = 50/63 (79.37%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:    1 EVDLEDYVNRPEKVSAADISAIAQEAGLQAVRKNRYVVLGKDLDKAYKKHVNKHDTEHAFYSM 189
            ++DLEDYVNRPEK+S+AD++AI QEAGLQAVR+NRYV+LGKD D+AYKKHVNK D EHAFYSM
Sbjct:  346 DLDLEDYVNRPEKISSADVAAICQEAGLQAVRQNRYVILGKDFDEAYKKHVNKADKEHAFYSM 408
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14902.3730.1 vs. uniprot
Match: A0A835ZCH4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCH4_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.410e-25
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 EVDLEDYVNRPEKVSAADISAIAQEAGLQAVRKNRYVVLGKDLDKAYKKHVNKHDTEHAFYS 186
            EVDLEDYVNRPEK+SAADISAI QEAGLQAVR+NRYVVLGKDLDKAYK +VNK D E AFYS
Sbjct:  335 EVDLEDYVNRPEKISAADISAICQEAGLQAVRQNRYVVLGKDLDKAYKNNVNKADKELAFYS 396
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14902.3730.1 vs. uniprot
Match: K8Z3K8_NANGC (26S proteasome regulatory subunit T3 n=5 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z3K8_NANGC)

HSP 1 Score: 104 bits (259), Expect = 5.470e-25
Identity = 50/63 (79.37%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    1 EVDLEDYVNRPEKVSAADISAIAQEAGLQAVRKNRYVVLGKDLDKAYKKHVNKHDTEHAFYSM 189
            +VDLEDYVNRPEK+SAAD++AIAQEAGLQAVRKNRYV+L +D D+AYKKHV K D EH FYSM
Sbjct:  349 DVDLEDYVNRPEKISAADVAAIAQEAGLQAVRKNRYVILARDFDEAYKKHVTKADKEHWFYSM 411
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14902.3730.1 vs. uniprot
Match: A0A7S2RC03_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RC03_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.640e-23
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:    1 EVDLEDYVNRPEKVSAADISAIAQEAGLQAVRKNRYVVLGKDLDKAYKKHVNKHDTEHAFYS 186
            E+DLEDYVNRPEK+SAAD+SAI QEAGLQAVR+NRYVVL KD D AYKKHVNK D + AFYS
Sbjct:  364 EMDLEDYVNRPEKISAADLSAICQEAGLQAVRENRYVVLTKDFDNAYKKHVNKADKDFAFYS 425
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14902.3730.1 vs. uniprot
Match: U6L0J0_EIMTE (CBN-RPT-3 protein, related n=1 Tax=Eimeria tenella TaxID=5802 RepID=U6L0J0_EIMTE)

HSP 1 Score: 92.8 bits (229), Expect = 6.790e-23
Identity = 44/63 (69.84%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    1 EVDLEDYVNRPEKVSAADISAIAQEAGLQAVRKNRYVVLGKDLDKAYKKHVNKHDTEHAFYSM 189
            EVDLED+++RPEKVSAADI+AI QEAG+QAVRKNRYVVL KD +K +K HV KH+ +  FYS+
Sbjct:   60 EVDLEDFISRPEKVSAADIAAICQEAGMQAVRKNRYVVLAKDFEKGWKAHVRKHERDFEFYSV 122
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14902.3730.1 vs. uniprot
Match: A0A7S1GAQ3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GAQ3_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.460e-22
Identity = 48/61 (78.69%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 EVDLEDYVNRPEKVSAADISAIAQEAGLQAVRKNRYVVLGKDLDKAYKKHVNKHDTEHAFY 183
            EVDLEDYVNRPEK+SAADI+AI  EAG+QAVR NRYVVL KD DK YKKHV + DTEH FY
Sbjct:  352 EVDLEDYVNRPEKISAADIAAICAEAGMQAVRHNRYVVLPKDFDKGYKKHVKRADTEHEFY 412
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14902.3730.1 vs. uniprot
Match: A0A1D3D6C4_9EIME (Cbn-rpt-3 related protein n=1 Tax=Cyclospora cayetanensis TaxID=88456 RepID=A0A1D3D6C4_9EIME)

HSP 1 Score: 92.0 bits (227), Expect = 3.440e-22
Identity = 45/63 (71.43%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    1 EVDLEDYVNRPEKVSAADISAIAQEAGLQAVRKNRYVVLGKDLDKAYKKHVNKHDTEHAFYSM 189
            EVDLED+V+RPEKVSAADI+AI QEAG+QAVRKNRYVVL KD +K +K HV KH+ +  FYS+
Sbjct:   95 EVDLEDFVSRPEKVSAADIAAICQEAGMQAVRKNRYVVLTKDFEKGWKVHVRKHERDFEFYSV 157
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14902.3730.1 vs. uniprot
Match: A0A7S2XX15_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX15_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 6.960e-22
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    1 EVDLEDYVNRPEKVSAADISAIAQEAGLQAVRKNRYVVLGKDLDKAYKKHVNKHDTEHAFYSM 189
            ++DLEDYVNR EK+SAADISAI QEAGL AVR+NRYVVL KD DKAYK + NK D EHAFYS+
Sbjct:  342 DLDLEDYVNRAEKISAADISAICQEAGLCAVRENRYVVLPKDFDKAYKNNTNKQDKEHAFYSI 404
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14902.3730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LKY2_9PHAE2.360e-36100.00AAA_lid_3 domain-containing protein n=1 Tax=Ectoca... [more]
D7G6R8_ECTSI6.670e-33100.00AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6V1PIA9_HETAK3.800e-2679.37Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835ZCH4_9STRA3.410e-2587.10P-loop containing nucleoside triphosphate hydrolas... [more]
K8Z3K8_NANGC5.470e-2579.3726S proteasome regulatory subunit T3 n=5 Tax=Monod... [more]
A0A7S2RC03_9STRA1.640e-2380.65Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
U6L0J0_EIMTE6.790e-2369.84CBN-RPT-3 protein, related n=1 Tax=Eimeria tenella... [more]
A0A7S1GAQ3_9STRA1.460e-2278.69Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A1D3D6C4_9EIME3.440e-2271.43Cbn-rpt-3 related protein n=1 Tax=Cyclospora cayet... [more]
A0A7S2XX15_9STRA6.960e-2276.19Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14902contigEcto-sp13_S_contig14902:2805..2996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score127.1
Seed ortholog evalue2.9e-27
Seed eggNOG ortholog2880.D7G6R8
Preferred namePSMC4
Model size192
KEGG koko:K03063
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000228,GO:0000502,GO:0000731,GO:0000785,GO:0000790,GO:0001673,GO:0001701,GO:0001824,GO:0002020,GO:0002082,GO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005783,GO:0005789,GO:0005811,GO:0005829,GO:0005838,GO:0005911,GO:0006139,GO:0006140,GO:0006163,GO:0006259,GO:0006281,GO:0006301,GO:0006302,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006511,GO:0006515,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006914,GO:0006919,GO:0006950,GO:0006970,GO:0006972,GO:0006974,GO:0006996,GO:0007034,GO:0007041,GO:0007088,GO:0007275,GO:0007346,GO:0008047,GO:0008104,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008333,GO:0008540,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009109,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009166,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009506,GO:0009628,GO:0009790,GO:0009792,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010918,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0010965,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016192,GO:0016197,GO:0016234,GO:0016236,GO:0016462,GO:0016504,GO:0016567,GO:0016579,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017025,GO:0017076,GO:0017111,GO:0017144,GO:0018130,GO:0018193,GO:0018196,GO:0018279,GO:0019058,GO:0019079,GO:0019219,GO:0019220,GO:0019222,GO:0019362,GO:0019438,GO:0019439,GO:0019538,GO:0019637,GO:0019674,GO:0019693,GO:0019899,GO:0019902,GO:0019903,GO:0019904,GO:0019941,GO:0019985,GO:0022411,GO:0022607,GO:0022624,GO:0023051,GO:0023056,GO:0030054,GO:0030071,GO:0030111,GO:0030162,GO:0030163,GO:0030177,GO:0030234,GO:0030312,GO:0030433,GO:0030554,GO:0030808,GO:0030810,GO:0030970,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031399,GO:0031401,GO:0031593,GO:0031595,GO:0031597,GO:0031625,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032509,GO:0032510,GO:0032527,GO:0032553,GO:0032555,GO:0032559,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033554,GO:0034098,GO:0034214,GO:0034399,GO:0034404,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034976,GO:0035639,GO:0035800,GO:0035861,GO:0035966,GO:0035967,GO:0036094,GO:0036211,GO:0036402,GO:0036435,GO:0036503,GO:0036513,GO:0042175,GO:0042176,GO:0042221,GO:0042287,GO:0042288,GO:0042325,GO:0042327,GO:0042391,GO:0042623,GO:0042726,GO:0042728,GO:0042802,GO:0042886,GO:0042981,GO:0043009,GO:0043065,GO:0043067,GO:0043068,GO:0043073,GO:0043085,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043248,GO:0043254,GO:0043280,GO:0043281,GO:0043412,GO:0043413,GO:0043457,GO:0043467,GO:0043531,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044389,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045184,GO:0045202,GO:0045732,GO:0045787,GO:0045838,GO:0045840,GO:0045842,GO:0045862,GO:0045893,GO:0045898,GO:0045899,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0045981,GO:0046034,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046907,GO:0048193,GO:0048471,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051276,GO:0051336,GO:0051345,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051788,GO:0051881,GO:0051983,GO:0051984,GO:0052547,GO:0052548,GO:0055044,GO:0055086,GO:0060255,GO:0060260,GO:0060261,GO:0060828,GO:0061134,GO:0061136,GO:0061641,GO:0061857,GO:0061919,GO:0062012,GO:0062013,GO:0062033,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070085,GO:0070646,GO:0070647,GO:0070682,GO:0070727,GO:0070841,GO:0070842,GO:0070887,GO:0071218,GO:0071310,GO:0071702,GO:0071704,GO:0071705,GO:0071712,GO:0071840,GO:0071897,GO:0071944,GO:0071985,GO:0072387,GO:0072389,GO:0072521,GO:0072524,GO:0080090,GO:0090068,GO:0090085,GO:0090263,GO:0090304,GO:0090734,GO:0097159,GO:0097352,GO:0097367,GO:0098772,GO:0098796,GO:0098827,GO:0140030,GO:1900371,GO:1900373,GO:1900542,GO:1900544,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1902680,GO:1903003,GO:1903004,GO:1903006,GO:1903007,GO:1903050,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903506,GO:1903508,GO:1903513,GO:1903578,GO:1903580,GO:1903715,GO:1903862,GO:1904288,GO:1904949,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990381,GO:1990730,GO:2000058,GO:2000060,GO:2000112,GO:2000116,GO:2000142,GO:2000144,GO:2000152,GO:2000158,GO:2001056,GO:2001141,GO:2001169,GO:2001171,GO:2001252
Exons1
EggNOG free text desc.proteasome-activating ATPase activity
EggNOG OGsCOG1222@1,KOG0727@2759
Cds size192
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03051
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462795.0489376-CDS-Ecto-sp13_S_contig14902:2804..29961681462795.0489376-CDS-Ecto-sp13_S_contig14902:2804..2996Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14902 2805..2996 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14902.3730.1prot_Ecto-sp13_S_contig14902.3730.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14902 2805..2996 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14902.3730.1

>prot_Ecto-sp13_S_contig14902.3730.1 ID=prot_Ecto-sp13_S_contig14902.3730.1|Name=mRNA_Ecto-sp13_S_contig14902.3730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
EVDLEDYVNRPEKVSAADISAIAQEAGLQAVRKNRYVVLGKDLDKAYKKH
VNKHDTEHAFYSM*
back to top

mRNA from alignment at Ecto-sp13_S_contig14902:2805..2996-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14902.3730.1 ID=mRNA_Ecto-sp13_S_contig14902.3730.1|Name=mRNA_Ecto-sp13_S_contig14902.3730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14902:2805..2996- (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGTGGACCTAGAGGACTACGTCAACAGGCCCGAGAAGGTAAGCGCAGC
TGACATCTCCGCCATCGCGCAGGAGGCCGGGCTACAGGCGGTGCGCAAGA
ACCGATACGTGGTGCTGGGTAAGGATCTGGACAAGGCCTACAAGAAGCAC
GTCAACAAGCACGACACCGAGCACGCCTTCTACTCCATGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14902:2805..2996-

>mRNA_Ecto-sp13_S_contig14902.3730.1 ID=mRNA_Ecto-sp13_S_contig14902.3730.1|Name=mRNA_Ecto-sp13_S_contig14902.3730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14902:2805..2996- (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGTGGACCTAGAGGACTACGTCAACAGGCCCGAGAAGGTAAGCGCAGC
TGACATCTCCGCCATCGCGCAGGAGGCCGGGCTACAGGCGGTGCGCAAGA
ACCGATACGTGGTGCTGGGTAAGGATCTGGACAAGGCCTACAAGAAGCAC
GTCAACAAGCACGACACCGAGCACGCCTTCTACTCCATGTAG
back to top