mRNA_Ecto-sp13_S_contig14898.3726.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14898.3726.1 vs. uniprot
Match: D8LDX5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDX5_ECTSI) HSP 1 Score: 238 bits (607), Expect = 3.150e-73 Identity = 138/208 (66.35%), Postives = 158/208 (75.96%), Query Frame = 3
Query: 189 LDQKRESIMGGTAIPMDLAAFHGHSDVVRELAQWRGCGVASAGNQA---LLFAASKQHFDTMAILNGTGV-DRMVLSLLGAAGSDLVAYVKFRLRQRYNKSARSTKHLYVNARDTDGCTPLAHASCISRCCSHAPRIVRLLVRAGADVVLAVRVTNSDGEQE*SGTLLAVVTPCLREKGLANDTSTTEEHLHRLEAIHRLLV-QIEAV 797
L +K S G TAIPMD+A +GHSDVVR+L QWRGCGVA+AG+QA L FAAS+QH MAIL G GV D + LSLLGAA S L A VKF LRQRY++S RS ++ YVNA DTDG TPLAH+ I RCCSHA RI+RLL AGADV AVRVTNS+G+QE SGT LAVVT C+REK LAN T TEEHL+ LEAI RLL+ +IE V
Sbjct: 76 LTKKGNSSSGDTAIPMDVAVQNGHSDVVRKLVQWRGCGVANAGSQACQALFFAASEQHLVIMAILTGAGVVDWVGLSLLGAAESALEASVKFLLRQRYHESTRSVEYSYVNASDTDGWTPLAHS--IQRCCSHAARIIRLLFDAGADVASAVRVTNSNGQQEYSGTPLAVVTSCIREKVLANGTPATEEHLYMLEAIGRLLLLEIEGV 281
BLAST of mRNA_Ecto-sp13_S_contig14898.3726.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI) HSP 1 Score: 177 bits (450), Expect = 4.990e-48 Identity = 117/249 (46.99%), Postives = 143/249 (57.43%), Query Frame = 3
Query: 222 TAIPMDLAAFHGHSDVVRELAQW---RGCGVASAGNQALLFAASKQHFDTMAILNGTGVDRMVLSLLGAAGSDLVAYVKFRLRQRYNKSARSTKHLYVNARDTDGCTPLAHASCISRCCSHAPRIVRLLVRAGADVVLAVRVTNSDGEQE*SGTLLAVVTPCLREKGLANDTSTTEEHLHRLEAIHRLLVQIEAVHAVS*MSASDPPLVGHAG--------PLLILMLPTLRRRKQPRDVLAIAILRWG 935
T +P+DLAA HGH+DVVREL Q GC SAG AL FAAS QH D MAIL GV +L AAG A VKF LR R+ + + Y+NARD +G TPL C C S APRIVR+LV AGAD V+V N G + T LA LR+K +A+ T+EHL RLEAI RLL++++AVHAVS + S P +G A P L LMLP L+RR + R L +LR+
Sbjct: 278 TTVPLDLAAKHGHTDVVRELIQELGIEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVDTGKALYLAAGMGHEASVKFLLRHRHKEGGCGVEGAYLNARDVNGYTPLV--VCTQGCFSQAPRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGRATETDPEPPLPALKLMLPILKRRTKRRCGLVATLLRYS 524
BLAST of mRNA_Ecto-sp13_S_contig14898.3726.1 vs. uniprot
Match: A0A6H5JGA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGA9_9PHAE) HSP 1 Score: 163 bits (413), Expect = 2.860e-45 Identity = 100/192 (52.08%), Postives = 116/192 (60.42%), Query Frame = 1
Query: 34 MKSQGFTPLHKAAKEGRFEVVGVLIGALASPNSWMVC-------------KRSGTVALRGKANPFLTKKGNPSWG--VLPSQWT*RPSMGTQTWCAS*PSGGVVVSQVPAIKRSFLLHRNNTSTPWRF*MGQV----WTGWSYLSWVPREVTLWHTSSFAYGNGTTRVHGALNTCTSTPATLTAARPWLMLL 552
M SQG TPLHKAA E + EVVGVLI ALA+PNS MVC + + LRGK NPFLTK GN S G +P P+MGT WCA+ SG VVVS A ++ L + + + G +YLSW P +VTLWH SSF+ GNGTTRVHGALN TSTPATLTAARPWL+LL
Sbjct: 1 MTSQGSTPLHKAANETKSEVVGVLIRALANPNSRMVCGAIPLHIVAQFGHENATRELLRGKMNPFLTKTGNSSSGGTAIPMD---PPTMGTWAWCATYSSGEVVVSIANAGNQALLFAASEQHLDIVAILTEADVVDRVGLNYLSWAPSKVTLWHASSFSCGNGTTRVHGALNARTSTPATLTAARPWLILL 189
BLAST of mRNA_Ecto-sp13_S_contig14898.3726.1 vs. uniprot
Match: D7FVU0_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU0_ECTSI) HSP 1 Score: 163 bits (413), Expect = 7.910e-44 Identity = 106/226 (46.90%), Postives = 133/226 (58.85%), Query Frame = 3
Query: 183 PVLDQKRESIMGGTAIPMDLAAFHGHSDVVRELAQW---RGCGVASAGNQALLFAASKQHFDTMAILNGTG-VDRMVLSLLGAAGSDLVAYVKFRLRQRYNKSARSTKHLYVNARDTDGCTPLAHASCISRCCSHAPRIVRLLVRAGADVVLAVRVTNSDGEQE*SGTLLAVVTPCLREKGLANDTSTTEEHLHRLEAIHRLLVQIEAVHAVS*MSASDPPLVGHA 848
P + + S G +P+D+AA GHS VVR L Q +GC +AG QALL AASK+ DT+AIL G G VD +L+ AA + K LRQR + ++ +N R + G T L + I RC S PRIVRLL+ AGAD +R TNS+GE + +GT LA+ T L EK L N TEEHL RLEAI RLL++ EAVHAVS + SD VGHA
Sbjct: 156 PCICIQPPSSSGFPGVPLDVAASSGHSGVVRHLVQELGIKGCNPENAGKQALLLAASKRDLDTLAILTGAGAVDTSGSALMCAAEASF----KHFLRQRLKEEKGGVEYASINDRISSGLTALVFS--IQRCLSQTPRIVRLLINAGADTTSVIRGTNSEGEVQCNGTPLALTTSYLWEKILDNGEPATEEHLQRLEAIRRLLLRAEAVHAVSWLWPSDASFVGHA 375
BLAST of mRNA_Ecto-sp13_S_contig14898.3726.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI) HSP 1 Score: 140 bits (354), Expect = 1.050e-36 Identity = 99/205 (48.29%), Postives = 118/205 (57.56%), Query Frame = 3
Query: 348 QHFDTMAILNGTGV-DRMVLSLLGAAGSDLVAYVKFRLRQRYNKSARSTKHLYVNARDTDGCTPLAHASCISRCCSHAPRIVRLLVRAGADVVLAVRVTNSDGEQE*SGTLLAVVTPCLREKGLANDTSTTEEHLHRLEAIHRLLVQIEAVHAVS*MSASDPPLVGHA----------GPLLILMLPTLRRRKQPRDVLAIAILR 929
QH D MAIL G GV D M LLG AG A V+F LRQR +S S H Y N+ D G TPL+ + I C S PRIVRLLV AGAD VRVTN +G E + T LAV T LREK + + TEE LHRL+AI RLL++++AVHAVS + SD P + HA P L L LP L+RR + V +LR
Sbjct: 3 QHMDIMAILTGAGVRDAMGYVLLGTAGLGREASVQFLLRQRRKESEMSV-HAYANSSDGSGMTPLSCS--IEWCSSGNPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSLLREK-VVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSCGPEPRRPPLSLTLPILKRRAKTCHVFVATLLR 203
BLAST of mRNA_Ecto-sp13_S_contig14898.3726.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE) HSP 1 Score: 114 bits (285), Expect = 4.070e-25 Identity = 99/261 (37.93%), Postives = 132/261 (50.57%), Query Frame = 3
Query: 216 GGTAIPMDLAAFHGHSDVVRELAQW---RGCGVASAGNQALLFAASKQHFDTMAILNGTGVDRMVLSLLGAAGSDLVAYVKFRLRQRYNKSARSTKHL----YVNARDTDGCTPLAHASCISRCCSHAPRIVRLLVRAGADVVLAVRVTNSDGEQE*SGTLLAVVTPCLREK-GLANDTSTTEEHLHRLEAIHRLLVQIEAVHAVS*MSASDPPLVGHAGPL---------LILMLPTL--RRRKQPRDVLAIAILRWGER 941
G T +P+D AA +GH +VV EL + GCG +S G +AL AA ++ + M IL GV L+L+ AAG +KF L Q AR+ K + YVN RD G TPL R PR+VRLLV AGAD V V N G + S T L + +R+K + + E LH+LEAI RLL+++EAVHAVS + SD + A + LP L RRR + R V A+LR+ +
Sbjct: 184 GRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVDTGLALVVAAGYGGETPLKFLLEQ-----ARARKTMDEAAYVNTRDRGGVTPLLWGIQHYR-----PRVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAARGTDRTTAISTAVTLPMLVTRRRARGRKVPLAALLRYSSK 434
BLAST of mRNA_Ecto-sp13_S_contig14898.3726.1 vs. uniprot
Match: D8LL76_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL76_ECTSI) HSP 1 Score: 114 bits (284), Expect = 5.180e-25 Identity = 94/227 (41.41%), Postives = 117/227 (51.54%), Query Frame = 3
Query: 183 PVLDQKRESIMGGTAIPMDLAAFHGHSDVVRELAQW---RGCGVASAGNQALLFAASKQHFDTMAILNGTGVDRMVLSLLGAAGSDLVAYVKFRLRQRYNKSARSTKHLYVNA-RDTDGCTPLAHASCISRCCSHAPRIVRLLVRAGADVVLAVRVTNSDGEQE*SGTLLAVVTPCLREKGLANDTSTTEEHLHRLEAIHRLLVQIEAVHAVS*MSASDPPLVGHAG 851
P+L + S G T +P+D AA +GH V REL Q RGC ASAG AL AA QH D MA+L GV +L+ +KF L Q+ +AR+T Y + RD G TPL A C +PR+VRLLV AGAD LAVRV + G T L T CL EK + D +T ++ L L A RLL+Q+E VHA S + GHAG
Sbjct: 170 PLLPTRMSS--GNTFVPLDGAALNGHLAVARELVQRFGIRGCAGASAGVDALGQAAVDQHLDVMALLCDAGVVDTGNALVATVFLGRERALKFLLEQKGEGTARTT---YASTPRDGRGHTPLLSAVTTGPC---SPRVVRLLVDAGADATLAVRVPDGFGRST-KYTPLDCATRCLAEKVVDEDFATAQQ-LRNLRASRRLLLQVEVVHATSWLWG------GHAG 380
BLAST of mRNA_Ecto-sp13_S_contig14898.3726.1 vs. uniprot
Match: A0A6H5JL33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL33_9PHAE) HSP 1 Score: 111 bits (277), Expect = 4.250e-24 Identity = 84/214 (39.25%), Postives = 116/214 (54.21%), Query Frame = 3
Query: 174 EGEPVLDQKRESIMGGTAIPMDLAAFHGHSDVVRELAQW---RGCGVASAGNQALLFAASKQHFDTMAILNGTGVDRMVLSLLGAAGSDLVAYVKFRLRQRYNKSARSTKHLYVN-ARDTDGCTPLA---HASCISRCCSHAPRIVRLLVRAGADVVLAVRVTNSDGEQE*SGTLLAVVTPCLREKGLANDTSTTEEHLHRLEAIHRLLVQIEA 794
+ P+L + S G T +P+D AA +G ++VVREL + +GCG AS G AL AA Q+ D M++L GV +L+ AAG + A VK L+QR+ SA ++YVN D G TPL CS PR+VRLLV AGAD V AV + + G+ S T + T C + + + E+H+H+L AIHRL Q+EA
Sbjct: 173 KANPLLTKPTPS--GVTFVPLDTAAEYGQTEVVRELIKQVSIKGCGGASGGVYALRLAALSQNVDVMSVLADAGVMDTGEALITAAGRNDEAGVKLLLQQRHGTSAGGELYMYVNDTHDLVGRTPLLCSIDGGMAGFRCS--PRVVRLLVDAGADTVSAVPLKGTAGQIGRSVTPIDFAT-CSLHENMDGGKTAMEKHVHKLRAIHRLFSQVEA 381
BLAST of mRNA_Ecto-sp13_S_contig14898.3726.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI) HSP 1 Score: 110 bits (276), Expect = 7.250e-24 Identity = 103/266 (38.72%), Postives = 136/266 (51.13%), Query Frame = 3
Query: 213 MGGTAIPMDLAAFHGHSDVVRELAQW---RGCGVASAGNQALLFAASKQHFDTMAILNGTG--VDRMVLSLLGAAGSDLVAYVKFRLRQRYNKSARSTKHLYVNA-RDTDGCTPLAHASCIS--RCCSHAPRIVRLLVRAGADVVLAVRVTNSDGEQE*-SGTLLAVVTPCLREKGLANDTSTTEEHLHRLEAIHRLLVQIEAVHAVS*MSAS-DPPLVGHAG-------------PLLILMLPTLRRRKQPRDVLAIAILRWGER 941
MG + +P+++AA HG+ DV RE+ + RGCG S G +AL AA ++H + MA+L G VD +L A VA VKF LR+R ++ YVN RD G TP+ A + R CS P+IVRLLV AGA+ AV VT E S T LA T LRE G + + T+E L RL+ LL + EAVHAVS + AS +PP + A L M P LRR+ R VL + R+ +
Sbjct: 179 MGVSYVPLEMAALHGNPDVAREMIRQVGIRGCGGPSGGVEALRQAADEEHLEFMAVLLDAGGVVDTGPALILAAENGRAVA-VKFLLRRR-----QADADAYVNGTRDPYGRTPVMCAVDVGAGRLCS--PKIVRLLVDAGANTTRAVGVTRITPRWEKTSETPLAFTTRLLRE-GRVDGEAATKEQLQRLKDTRCLLSRAEAVHAVSWLWASGEPPRIAQAAGDTKTETASTAVATPLRAMSPMLRRKPGTRGVLLKTLFRYSRK 435
BLAST of mRNA_Ecto-sp13_S_contig14898.3726.1 vs. uniprot
Match: D7G1U9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U9_ECTSI) HSP 1 Score: 110 bits (275), Expect = 1.030e-23 Identity = 98/249 (39.36%), Postives = 118/249 (47.39%), Query Frame = 3
Query: 252 HGHSDVVRELAQW---RGCGVASAGNQALLFAASKQHFDTMAILNGTGVDRMVLSLLGAAGSDLVAYVKFRLRQRYNKSARSTKHLYVN-ARDTDGCTPLAHASCISRCCSHAPRIVRLLVRAGADVVLAVRVTNSDGEQE*SGTLLAVVTPCLREKGLANDTSTTEEHLHRLEAIHRLLVQIEAVHAVS*MSASDPPLVGHA-------------GPLLILMLPTLRRRKQPRDVLAIAILRWGERQV 947
HGHS+VVREL Q RGCG SAG ++L AA++Q+ D M IL GV +L+ AA VKF L+ + YVN D G TPL I C S +PRI R L+ GAD V VT S T L T LR+ + +T EE L L+AIHRLL QIEAVHAVS + S +GHA GP L M LR R V+ A+ R E V
Sbjct: 190 HGHSEVVRELIQQLGVRGCGGVSAGVESLRLAATEQYVDIMGILTVGGVVDTGRALVVAAEYSREESVKFLLQHQAGGGT-----WYVNNTLDPFGRTPLVCT--IEACGSSSPRIARFLIDDGADTKSTVLVTRSGEWTTSRDTPLGFATRSLRQNKVGGKNAT-EEQLRSLKAIHRLLSQIEAVHAVSWLWRSSDTPIGHAVGAASSRMKPTTAGPTLKRMSTVLRTTVGKRGVVLRAVYRAAEELV 430 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14898.3726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14898.3726.1 >prot_Ecto-sp13_S_contig14898.3726.1 ID=prot_Ecto-sp13_S_contig14898.3726.1|Name=mRNA_Ecto-sp13_S_contig14898.3726.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=151bp MGGTAIPMDLAAFHGHSDVVRELAQWRGCGVASAGNQALLFAASKQHFDTback to top mRNA from alignment at Ecto-sp13_S_contig14898:1836..2784- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14898.3726.1 ID=mRNA_Ecto-sp13_S_contig14898.3726.1|Name=mRNA_Ecto-sp13_S_contig14898.3726.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=949bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14898:1836..2784- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14898:1836..2784- >mRNA_Ecto-sp13_S_contig14898.3726.1 ID=mRNA_Ecto-sp13_S_contig14898.3726.1|Name=mRNA_Ecto-sp13_S_contig14898.3726.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=453bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14898:1836..2784- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |