mRNA_Ecto-sp13_S_contig14896.3724.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14896.3724.1
Unique NamemRNA_Ecto-sp13_S_contig14896.3724.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14896.3724.1 vs. uniprot
Match: D8LTN0_ECTSI (GPA5, alpha subunit of a heterotrimeric G protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTN0_ECTSI)

HSP 1 Score: 342 bits (878), Expect = 1.700e-115
Identity = 183/201 (91.04%), Postives = 185/201 (92.04%), Query Frame = 1 
Query:    1 LLGAGESGKSTVVKQASKGSILNVKMIYKGGVSKKEKDDYARAIRRNVIESMQTLIETLGTLGLALKGDDQEGLKAAMENIAALTPEDTLTPEIAEDVSKLWADEGMQASEIKRARRSEFWALDATPYYLQEARRLADPELEVTDEDMIMTRTRTTGIIVTEFSDNPYTYSLVDVGGQRSERRKWMHCFDDVKAIVFLVGL 603
            LLGAGESGKSTVVKQ        VKMIYKGGVSKKEKDDYARAIRRNVIESMQTLI+TLGTLGLALKGDDQEGLKAA ENIA LTPEDTLTPEIAEDVSKLWADEGMQ      +RRSEFWALDATPYYLQEARRLADPELEVTDEDMIMTRTRTTGIIVTEFSDNPYTYSLVDVGGQRSERRKWMHCFDDVKAIVFLVGL
Sbjct:   38 LLGAGESGKSTVVKQ--------VKMIYKGGVSKKEKDDYARAIRRNVIESMQTLIDTLGTLGLALKGDDQEGLKAAKENIALLTPEDTLTPEIAEDVSKLWADEGMQEL---WSRRSEFWALDATPYYLQEARRLADPELEVTDEDMIMTRTRTTGIIVTEFSDNPYTYSLVDVGGQRSERRKWMHCFDDVKAIVFLVGL 227
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14896.3724.1 vs. uniprot
Match: A0A835Z6Q6_9STRA (GPA5, alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Q6_9STRA)

HSP 1 Score: 220 bits (560), Expect = 9.960e-68
Identity = 119/201 (59.20%), Postives = 146/201 (72.64%), Query Frame = 1 
Query:    1 LLGAGESGKSTVVKQASKGSILNVKMIYKGGVSKKEKDDYARAIRRNVIESMQTLIETLGTLGLALKGDDQEGLKAAMENIAALTPEDTLTPEIAEDVSKLWADEGMQASEIKRARRSEFWALDATPYYLQEARRLADPELEVTDEDMIMTRTRTTGIIVTEFSDNPYTYSLVDVGGQRSERRKWMHCFDDVKAIVFLVGL 603
            LLGAGESGKSTVVKQ        VK+IYKG V+ KEK++Y  AIRRNVI+SMQT+++ + + G+ L    + G   A   +     E  L+  +A DV+ LWADEG++A      RR EFW LDA+ YY +EA RLA+P+ E TDEDMIMTR RTTGI+VTEF D PY++SLVDVGGQRSERRKW+HCFDDVKAI+FL GL
Sbjct:   38 LLGAGESGKSTVVKQ--------VKLIYKGVVTAKEKEEYTSAIRRNVIDSMQTMLDAMESFGIELA---RPGSGDAAARVRGADAEAALSEALAADVTALWADEGLRAC---YERRDEFWLLDASHYYFEEAMRLAEPDYEPTDEDMIMTRIRTTGIVVTEFEDKPYSFSLVDVGGQRSERRKWIHCFDDVKAIIFLEGL 224
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14896.3724.1 vs. uniprot
Match: A0A6S9GGW2_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GGW2_HETAK)

HSP 1 Score: 215 bits (548), Expect = 6.380e-66
Identity = 118/206 (57.28%), Postives = 147/206 (71.36%), Query Frame = 1 
Query:    1 LLGAGESGKSTVVKQASKGSILNVKMIYKGGVSKKEKDDYARAIRRNVIESMQTLIETLGTLGLALKGDDQEGLKAAMENIAALTPEDTLTPEIAEDVSKLWADEGMQASEIKRARRSEFWALDATPYYLQEARRL-----ADPELEVTDEDMIMTRTRTTGIIVTEFSDNPYTYSLVDVGGQRSERRKWMHCFDDVKAIVFLVGL 603
            LLGAGESGKSTVVKQ        +KMIYK GVSKKEK++Y  AIRRN I+ MQT++E + TL + +    +E L  A   +  +  + TLTP++A++++ LWAD G+QA      RR+E+W LDA PYYL E  RL     ADP    T+EDMIMTR RTTGI++TEF D P  Y++VDVGGQRSERRKW+HCFDDVKAI+FLVGL
Sbjct:   39 LLGAGESGKSTVVKQ--------IKMIYKNGVSKKEKEEYIGAIRRNAIDVMQTILEAMDTLSIDVS---KEELSEAATRVKEIAADATLTPDLAQNIADLWADAGVQAC---YERRAEYWLLDAAPYYLDEVLRLGAADYADP----TEEDMIMTRVRTTGIVITEFDDGPSRYNIVDVGGQRSERRKWIHCFDDVKAIIFLVGL 226
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14896.3724.1 vs. uniprot
Match: A0A812S7L1_SYMMI (GpaH protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812S7L1_SYMMI)

HSP 1 Score: 192 bits (489), Expect = 3.770e-57
Identity = 111/203 (54.68%), Postives = 139/203 (68.47%), Query Frame = 1 
Query:    1 LLGAGESGKSTVVKQASKGSILNVKMIYK--GGVSKKEKDDYARAIRRNVIESMQTLIETLGTLGLALKGDDQEGLKAAMENIAALTPEDTLTPEIAEDVSKLWADEGMQASEIKRARRSEFWALDATPYYLQEARRLADPELEVTDEDMIMTRTRTTGIIVTEFSDNPYTYSLVDVGGQRSERRKWMHCFDDVKAIVFLVGL 603
            LLGAGESGKSTVVKQ        VK+I+K  GG+S +EK DY  A+RRN IES+Q LIE   TL +AL+        A  + IA L  +  +   +A+ +S +W D+G+QA+     RRSEFW LDATPYYL E  R A  E +VT+ED++M R RTTGI+VT+  D PY Y +VDVGGQRSERRKW+HCFD+V AI+FL GL
Sbjct:   34 LLGAGESGKSTVVKQ--------VKLIWKVGGGMSNREKSDYRNALRRNTIESIQVLIEASKTLKIALEDS------ALAKEIANLQTDADMDETLAKKISGMWGDKGIQAT---FERRSEFWCLDATPYYLTEVFRFAS-EFDVTEEDILMARIRTTGIVVTQVPDPPYVYHVVDVGGQRSERRKWIHCFDNVNAIIFLEGL 218
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14896.3724.1 vs. uniprot
Match: A0A835ZKP0_9STRA (GPA4, alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKP0_9STRA)

HSP 1 Score: 187 bits (476), Expect = 5.480e-55
Identity = 101/201 (50.25%), Postives = 138/201 (68.66%), Query Frame = 1 
Query:    1 LLGAGESGKSTVVKQASKGSILNVKMIYKGGVSKKEKDDYARAIRRNVIESMQTLIETLGTLGLALKGDDQEGLKAAMENIAALTPEDTLTPEIAEDVSKLWADEGMQASEIKRARRSEFWALDATPYYLQEARRLADPELEVTDEDMIMTRTRTTGIIVTEFSDNPYTYSLVDVGGQRSERRKWMHCFDDVKAIVFLVGL 603
            LLGAGESGKSTV+KQ        V+MIYKG +S ++      AIRRN IESMQ +++ +   G+ L   + E   AA   I  L+ +  LT ++A+D++ LW D G++A   KR     +W LDA  YY  E +R++DP+ E T+ED+IMTR RTTGI  TEF ++PY +S+VDVGGQR+ERRKW+HCF++VKA+V+LVGL
Sbjct:   20 LLGAGESGKSTVLKQ--------VRMIYKGRMSAQDVRQCVEAIRRNAIESMQAVLQAMKVYGIPL---EDEAKAAARTRIIGLSEDSALTKDVADDITALWNDGGVKACYEKR---DLYWLLDAAAYYFNEVQRISDPKYEPTEEDVIMTRVRTTGIDHTEFIEHPYNWSVVDVGGQRNERRKWIHCFENVKAVVYLVGL 206
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14896.3724.1 vs. uniprot
Match: A0A482SN96_9ARCH (Guanine nucleotide-binding protein subunit alpha n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SN96_9ARCH)

HSP 1 Score: 179 bits (454), Expect = 7.790e-53
Identity = 100/201 (49.75%), Postives = 128/201 (63.68%), Query Frame = 1 
Query:    1 LLGAGESGKSTVVKQASKGSILNVKMIYKGGVSKKEKDDYARAIRRNVIESMQTLIETLGTLGLALKGDDQEGLKAAMENIAALTPEDTLTPEIAEDVSKLWADEGMQASEIKRARRSEFWALDATPYYLQEARRLADPELEVTDEDMIMTRTRTTGIIVTEFSDNPYTYSLVDVGGQRSERRKWMHCFDDVKAIVFLVGL 603
            LLGAGESGKSTVVKQ        +K+IY       EK  Y +A++RNVIE+MQTL+     L + L   D   L+ A E I AL  +  +T + A  + +LW D G+Q      ARR E+W +D TPYYL E  R+AD      +EDMIM R RTTGI+++E  + PY + +VDVGGQRSERRKW+HCFDDVKAI++L  L
Sbjct:   44 LLGAGESGKSTVVKQ--------IKIIYDVNEPTYEKQKYKQALQRNVIEAMQTLLSAAKQLNIPLANPD---LEEASEKIIALDSDSRITLQQAPMIDQLWKDVGIQKV---YARRDEYWNMDGTPYYLNEVYRIADNSFAPNEEDMIMARIRTTGIVISEVVETPYKFQVVDVGGQRSERRKWIHCFDDVKAIIYLASL 230
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14896.3724.1 vs. uniprot
Match: D8LBA2_ECTSI (GPA4, alpha subunit of a heterotrimeric G protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBA2_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 2.360e-49
Identity = 95/201 (47.26%), Postives = 127/201 (63.18%), Query Frame = 1 
Query:    1 LLGAGESGKSTVVKQASKGSILNVKMIYKGGVSKKEKDDYARAIRRNVIESMQTLIETLGTLGLALKGDDQEGLKAAMENIAALTPEDTLTPEIAEDVSKLWADEGMQASEIKRARRSEFWALDATPYYLQEARRLADPELEVTDEDMIMTRTRTTGIIVTEFSDNPYTYSLVDVGGQRSERRKWMHCFDDVKAIVFLVGL 603
            LLGAGESGKSTV+KQ        VKMIY+G ++  +      AIR+N IE MQ ++  + T  + L   +    K  +   A    E   TP +A+D++ LWAD G++ +     R+SE+W LD   YY   A RL   +   TDED+IMTR RTTGI  T+F++ PY YS+VDVGGQR+ERRKW+HCFD+V+ +VFLVGL
Sbjct:   40 LLGAGESGKSTVLKQ--------VKMIYRGRIADDDLQQCVMAIRKNSIECMQGVLRAMDTFEITLGLAENAPRKKRVREFAE---EGVFTPAVADDIASLWADPGVREA---YGRQSEYWLLDGASYYFDNALRLGQADFVPTDEDVIMTRIRTTGIDTTDFTEPPYMYSVVDVGGQRNERRKWIHCFDNVRCVVFLVGL 226
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14896.3724.1 vs. uniprot
Match: A0A835YY90_9STRA (GPA4, alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY90_9STRA)

HSP 1 Score: 170 bits (431), Expect = 3.970e-48
Identity = 91/201 (45.27%), Postives = 134/201 (66.67%), Query Frame = 1 
Query:    1 LLGAGESGKSTVVKQASKGSILNVKMIYKGGVSKKEKDDYARAIRRNVIESMQTLIETLGTLGLALKGDDQEGLKAAMENIAALTPEDTLTPEIAEDVSKLWADEGMQASEIKRARRSEFWALDATPYYLQEARRLADPELEVTDEDMIMTRTRTTGIIVTEFSDNPYTYSLVDVGGQRSERRKWMHCFDDVKAIVFLVGL 603
            LLGAGESGKSTV+KQ        V++I+KG ++ K+      AIR+N +E MQ +++ +    + L     E    A   I  +  + T + ++A+D+++LW+D G++A   KR     +W LDA  YY  E +R+ADP  E T++D+IMTR RTTGI  T+F + P++YS+VDVGGQR+ERRKW+HCF++VKA+V+LVGL
Sbjct:   33 LLGAGESGKSTVLKQ--------VRLIHKGKMTAKDIRQCTDAIRKNSVECMQAVLQAMTVHSIPLAN---EANAEARTRILTIQEDTTFSQQVADDITQLWSDTGVKACYEKR---DLYWLLDAAAYYFDEVQRIADPGFEPTEDDVIMTRVRTTGIDSTDFVEPPFSYSVVDVGGQRNERRKWVHCFENVKAVVYLVGL 219
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14896.3724.1 vs. uniprot
Match: D8LID3_ECTSI (GPA3, alpha subunit of a heterotrimeric G protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LID3_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 5.900e-47
Identity = 91/201 (45.27%), Postives = 132/201 (65.67%), Query Frame = 1 
Query:    1 LLGAGESGKSTVVKQASKGSILNVKMIYKGGVSKKEKDDYARAIRRNVIESMQTLIETLGTLGLALKGDDQEGLKAAMENIAALTPEDTLTPEIAEDVSKLWADEGMQASEIKRARRSEFWALDATPYYLQEARRLADPELEVTDEDMIMTRTRTTGIIVTEFSDNPYTYSLVDVGGQRSERRKWMHCFDDVKAIVFLVGL 603
            LLGAGESGKST  KQ        +KM+ KG +S  E   Y RAIR N++ESM+TL++   ++G+ L   + E     + +    T +   T  +  D+ KLW D+G+Q +    AR+ +FW LD+TPYY++EA RLA   +++T+ED++MTR  T+G+   E  D P  +++VDVGGQR+ER+KW+HCFDDVKA+VF+V L
Sbjct:   36 LLGAGESGKSTFGKQ--------LKMLAKGQLSVSEMALYRRAIRENLVESMKTLLDAAESMGIPLANAELEEEAERVRSTELATADMPST--LGYDILKLWQDQGVQET---WARKDKFWILDSTPYYMREAVRLAQDSVDITEEDVVMTRVMTSGVGSIEILDPPIKFTVVDVGGQRNERKKWLHCFDDVKAVVFIVSL 223
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14896.3724.1 vs. uniprot
Match: UPI0006449EC0 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006449EC0)

HSP 1 Score: 166 bits (419), Expect = 1.920e-46
Identity = 100/204 (49.02%), Postives = 124/204 (60.78%), Query Frame = 1 
Query:    1 LLGAGESGKSTVVKQASKGSILNVKMIYKGGVSKKEKDDYARAIRRNVIESMQTLIETLGTLGLALKGDDQEGLKAAMENIAALTPEDTLTP---EIAEDVSKLWADEGMQASEIKRARRSEFWALDATPYYLQEARRLADPELEVTDEDMIMTRTRTTGIIVTEFSDNPYTYSLVDVGGQRSERRKWMHCFDDVKAIVFLVGL 603
            LLGAGESGKSTVVKQ        +K IYK  V   E   YA  I +N +  MQ L+E   TLG+ L   DQE  K A  NI +   E  +      I  D+ +LW D+ +Q       RRSE+W LDATPYY     R  D +   T+ED+IMTR RTTGI VTEF + P  + +VDVGGQR+ER+KW+HCFDDVKA++F+V L
Sbjct:   38 LLGAGESGKSTVVKQ--------LKSIYKIQVDDAELQSYAANIHKNTVLCMQVLLEACETLGVELS--DQESKKRA-NNIRSFQFEQEVKQMPVSIGLDIEELWKDQDIQKI---WERRSEYWFLDATPYYFDNINRFLDDDFRPTEEDIIMTRVRTTGISVTEFDEGPVHFRVVDVGGQRNERKKWIHCFDDVKALLFVVNL 227
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14896.3724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTN0_ECTSI1.700e-11591.04GPA5, alpha subunit of a heterotrimeric G protein ... [more]
A0A835Z6Q6_9STRA9.960e-6859.20GPA5, alpha subunit of a heterotrimeric G protein ... [more]
A0A6S9GGW2_HETAK6.380e-6657.28Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A812S7L1_SYMMI3.770e-5754.68GpaH protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A835ZKP0_9STRA5.480e-5550.25GPA4, alpha subunit of a heterotrimeric G protein ... [more]
A0A482SN96_9ARCH7.790e-5349.75Guanine nucleotide-binding protein subunit alpha n... [more]
D8LBA2_ECTSI2.360e-4947.26GPA4, alpha subunit of a heterotrimeric G protein ... [more]
A0A835YY90_9STRA3.970e-4845.27GPA4, alpha subunit of a heterotrimeric G protein ... [more]
D8LID3_ECTSI5.900e-4745.27GPA3, alpha subunit of a heterotrimeric G protein ... [more]
UPI0006449EC01.920e-4649.02hypothetical protein n=1 Tax=Acytostelium subglobo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14896contigEcto-sp13_S_contig14896:1..4304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score344.0
Seed ortholog evalue4.8e-92
Seed eggNOG ortholog2880.D8LTN0
Preferred namegpaH
Model size603
KEGG koko:K04630
KEGG Pathwayko04015,ko04022,ko04024,ko04062,ko04071,ko04261,ko04360,ko04371,ko04540,ko04611,ko04670,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04730,ko04914,ko04915,ko04916,ko04921,ko04923,ko04924,ko04926,ko04934,ko04971,ko05012,ko05030,ko05032,ko05034,ko05133,ko05142,ko05145,ko05200,map04015,map04022,map04024,map04062,map04071,map04261,map04360,map04371,map04540,map04611,map04670,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04730,map04914,map04915,map04916,map04921,map04923,map04924,map04926,map04934,map04971,map05012,map05030,map05032,map05034,map05133,map05142,map05145,map05200
KEGG ModuleM00695
Hectar predicted targeting categoryother localisation
GOsGO:0001664,GO:0003674,GO:0003824,GO:0003924,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005834,GO:0005886,GO:0007154,GO:0007165,GO:0007186,GO:0007187,GO:0007188,GO:0008150,GO:0009898,GO:0009966,GO:0009987,GO:0010469,GO:0010646,GO:0010810,GO:0010811,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019897,GO:0019898,GO:0022407,GO:0022409,GO:0023051,GO:0023052,GO:0030155,GO:0031234,GO:0031683,GO:0032092,GO:0032101,GO:0032103,GO:0032991,GO:0040012,GO:0040017,GO:0043393,GO:0043937,GO:0043938,GO:0044093,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044877,GO:0045595,GO:0045785,GO:0048518,GO:0048519,GO:0048583,GO:0048584,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050920,GO:0050921,GO:0050923,GO:0050924,GO:0051094,GO:0051098,GO:0051099,GO:0051716,GO:0065007,GO:0065009,GO:0071944,GO:0098552,GO:0098562,GO:0098796,GO:0098797,GO:1900120,GO:1900122,GO:1902494,GO:1903664,GO:1903665,GO:1903667,GO:1903669,GO:1905360
Exons6
EggNOG free text desc.G-protein beta/gamma-subunit complex binding
EggNOG OGsKOG0082@1,KOG0082@2759
Ec32 ortholog descriptionGPA5, alpha subunit of a heterotrimeric G protein
Ec32 orthologEc-28_003480.1
Cds size603
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04031,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14896.3724.1prot_Ecto-sp13_S_contig14896.3724.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14896 1..4304 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462794.4231293-CDS-Ecto-sp13_S_contig14896:0..691681462794.4231293-CDS-Ecto-sp13_S_contig14896:0..69Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14896 1..69 +
1681462794.4349895-CDS-Ecto-sp13_S_contig14896:1231..13211681462794.4349895-CDS-Ecto-sp13_S_contig14896:1231..1321Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14896 1232..1321 +
1681462794.4430966-CDS-Ecto-sp13_S_contig14896:1713..18981681462794.4430966-CDS-Ecto-sp13_S_contig14896:1713..1898Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14896 1714..1898 +
1681462794.4510946-CDS-Ecto-sp13_S_contig14896:2763..28151681462794.4510946-CDS-Ecto-sp13_S_contig14896:2763..2815Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14896 2764..2815 +
1681462794.4590573-CDS-Ecto-sp13_S_contig14896:3021..31311681462794.4590573-CDS-Ecto-sp13_S_contig14896:3021..3131Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14896 3022..3131 +
1681462794.4670022-CDS-Ecto-sp13_S_contig14896:4207..43041681462794.4670022-CDS-Ecto-sp13_S_contig14896:4207..4304Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14896 4208..4304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14896.3724.1

>prot_Ecto-sp13_S_contig14896.3724.1 ID=prot_Ecto-sp13_S_contig14896.3724.1|Name=mRNA_Ecto-sp13_S_contig14896.3724.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=201bp
LLGAGESGKSTVVKQASKGSILNVKMIYKGGVSKKEKDDYARAIRRNVIE
SMQTLIETLGTLGLALKGDDQEGLKAAMENIAALTPEDTLTPEIAEDVSK
LWADEGMQASEIKRARRSEFWALDATPYYLQEARRLADPELEVTDEDMIM
TRTRTTGIIVTEFSDNPYTYSLVDVGGQRSERRKWMHCFDDVKAIVFLVG
L
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mRNA from alignment at Ecto-sp13_S_contig14896:1..4304+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14896.3724.1 ID=mRNA_Ecto-sp13_S_contig14896.3724.1|Name=mRNA_Ecto-sp13_S_contig14896.3724.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4304bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14896:1..4304+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCTGGGTGCAGGAGAGTCGGGGAAGAGCACCGTCGTCAAGCAGGCAAG
CAAAGGCAGCATATTGAACGTGCTGTGCACCCCTGAAAACGGCCTGTGCA
GCTATTGTAGCTGTCGGAACTACAGGCGTAGATCGAGGTTTGATTTTAGT
AATGACAAATGGCAAAGCTAAAGTTAGAATCTTTGCGTGCAACGTGCGAT
GTACGCATGTGCCGCAAGCCCCGAAGCGGGCTGAAATCACAGCAAATGAA
ACACCGGCCGCCGTATGCCAGCTTCAAAGTCAGCTTGAACATGATATGGG
CACACGAAAAGTTTGTAAGGAAGCGAACTCAATTTGATGGACGTCACCGG
GGTGTAGGTAGTGCATGGTGGCGCCTGGAACAAAGATACTCTGTTGGCTG
CACCATATTTCTAGGTTGCCTCAGCGAAGTGCTAGGCAACGTGTTAGCTA
CTACTGTGCACAGTCATATTTTTCATCAGGGAGAGAAGCAACGTAGCTCT
GCTAGTATTTTCAGCGGAAACAAGGTAGTTGGGAATGTTGATGGTGGTGC
AACAAGGGCCAGGTATGCTTTGAACCTACCGTCTGACCACAAGAGCCGGA
GAGTGCACCATATGCAGTCTGCGGCCAGAAGCTTCCCTAAGTTAACAAAA
CTGTCAACACACCAGTGCTGTGTTGATCGAGGCTAGTGTCCAATGGTCCG
GATCTTGGTATGTTCCCTCCTTTCCCCGCCGTTCCTGCCTCATTCGGGTG
AACCTTCGAAGAGCCATGAATTCGGCCCGACTTGAAGCTACACAGTAGTG
CGAGGGTCTCTGGCAGAAGGCGAAGGGGAGGTTTGGCGAAGGAGGACCCA
AAAAACACACCTTATCGAAAAATCGTCGGAGTGACATGGCGGTTGTGGGG
TATGGCAAAAGCATCATTTTAAGTACCGGGCCTCTGGACGAGAGAAGAAT
AGAAGTCGTTCGAACCCTCTGTCGATGCTATGTCTTGACGTAATGATACT
CTCACGAGTGCTGGAGAGAGTAGCGCAGAGACAAGGAGAGCGGTGGACAC
ACATCTACATGTTTGTCAGCTTGAGGAGGAGCCGCAAGTAAGCTGCATGC
CTGGTTCCCCTCGAGGCCCTCATAGGCGTCAATGAATGTCATTGTACCAG
ACGAGCGAGAGGTCTCTACTGTAGATCAAGAACAGCGACAGAAGCCTGAC
ATTTCCTTCGCCTTTGTGTGTTGGCCGACAGGTGAAGATGATATACAAGG
GCGGGGTATCGAAGAAGGAGAAAGATGACTACGCCAGAGCGATCAGACGA
AACGTCATCGAGAGCATGCAGGTGAAGCGGTCAAACCGCGAGCAAGCGCG
TTGAGTGTGCCAAGTGTGTTTATTGGACCGATTACGGGTCGTGCTATTAA
CTTCTCAGAAGAAAGGTTGTTTCGTTTAGTTGCTCCTTTCTCCGCCTCCG
TGACGCATAGCTTCACATAGGACCTCATCTGTTGTACTTCGAACTACTTT
GTACAAGGCGACCGTTTGTTAACGCTTTCATCAAGAGCTGCAACACATCG
TCGCTCGATGTAGAACCAAACACAGTTGGCAAGTCAGCAAACAATCGGCA
CGGTTGAGATGGAAACATCTTGGAACCAAACACAGTTGGACCGAAGGTAT
CATGTGATGTACGAAGAATCACACGTCCATCTTCCATTCTGCCCCCGTCC
AACCCCACCCTAGACTCTGATTGAAACGCTCGGGACGCTCGGATTAGCGC
TGAAAGGCGACGATCAGGAAGGGCTGAAGGCTGCTATGGAAAATATTGCC
GCGTTGACTCCCGAAGACACCCTGACCCCGGAGATAGCGGAGGATGTGTC
CAAGCTATGGGCAGACGAGGGAATGCAGGCGAGCGAAATCAAGCGTGCGT
CGTCACAGGCAATGCAGCTGTGCGAAAACTGAAGTCTTACACCCACATGA
CAACGACAGATAGATGCAAGTTCGCTACGTTACGCGCCGAGGCAATGGAC
GCCAGTAAGGCACGGGTTTTCACGTTCAGGGGCAGTCAAGGAGATGGTCA
CGGCGTTGTTGCTTGCCACTTCGATCCATTTAAATTTGGACGGATACGTA
AGCATGAGACGAACCGCGCCGGCCGAAGGCGAGACTTCGAGGGATACCCT
CTTACCCTTGCAATCGTCGCAGTCGTCATGCGAGCCTCGGTACAATAGGA
ACTGTCGACAGCCCGAACCATCTGCTCAGCCGGCGATTCGTTCGTGGCAT
TCAAGACATGAGGTGGACGGGAGGCCGCCTTCGTGGCATCCTGTGTGTTC
CTGTCGTTGGCAAATTCTGCACCAACCCTACCGCTGCCTTTGTTGATGAA
ATCCCCGATCGGGTCACATCTGCGATGGGCGCCATCGGGAGTATGAGCGA
AAAGAGTTCAATGGTGCACTACTGTACATCAAGTGGTATCACGAACAAGC
GCCTTCCGCGATACTAAATAGGCTCAACTTGCGGTAGAAACAAACACACC
GACGGTCCAATATCCCGGTAGTCTACTATTGACCGACGCAGCGACCTACG
CACGTGCTCGATCACCTGGTACAGCCGAAAAATGCACAAGTCTGTCCGTA
TCATCTCTCCGCTAAGTCGTGGGGGTTTCCTAGGCGGGAAGCCTTTAGGA
GACCGTGTTTGAGCTCGATTTCGAAGAGGAGAAGAATGTCAGTCAACGCA
AGACACGCGCCATGTCCTTGATGTTGCTTTTCCTGACCACTCGACACTTC
AGGAGCTCTGGAGTAGAAGGTCGGAGTTCTGGGCTCTTGACGCGACGCCC
TACTACCTGCAGGAGGTGAGTGCAGCTGCGTGGTATGACCGGGTGGGGTG
TCGAAATTTGCGTTTAGCGTGAGCAACGTGCATTGGTGTGCTTTAAAGTT
TGTACCTTGGTGTCCGGTGCCATTTTCCTCTCGGACCAGGTGTCTTCTGA
TCACAGCAATTACTGTAATCTCTTTCCGATGCCTCTGATATCTCGTGAAC
AACACGCTTCTTATTCGACAGGCGCGTCGATTGGCAGATCCGGAGCTAGA
GGTTACCGACGAGGACATGATAATGACTAGGACCAGGACTACGGGAATTA
TCGTTACCGAGTTTTCGGACAATCCTTACACGTGAGTGCCTAGGCCTGGG
GCACGAAAACAGAAGAAATATATCAAAACCCCAAACGCCGCTACTCATGA
TCCACGCGCGAGCACATCAGCAACAACACGGTTAGAAACAAGCAAGAATT
TCACCACCGCCATCACCAGCAATAACGCGAGCAAAATGTTGTCCTCATGT
CGGGGGTGACGATCACGCAGGCACGCACGTCGTCTGTGGTCACTGACCCT
TGCAGGCCATTCCAGCGTCTGCGAAGGGAATCATTTCTTGTCACGTGTCA
GGCGCACAGAACGGTCTCGTTCGTGCCCTCAGGCTCTTTCCTAGAAGCGG
TAGGAAGGGATTCGATGACATTTACAAATCCTCGGACACAGGGAACGGCT
CTCACGAGATATTGGATGCGAGAGATTATTCTTGCGTGTAACTATGCCCT
TAGTTGTTCTGGTTTTCGTTGGGCCGACGACAACAATCAATCACTATCCT
GGTACACAGGTGGAGATCGACCCCCCTTCCCCAGTGTATTGGATGCCCGC
GACGCCTTGTGGAGACCTTGTCAAGGTCGGACACCTTGGGGAACACATCC
AAGTCCTCAAAAATACCTCAATTTCCTTGCTTCGAGGCCTTGGTTGGGTT
TACAAAGGTATCCGACCTCGACGAGGTCTTTACAAGGGGGCACGGGGATC
CAACATCTTGGCGAGCGGGGTCGACCTCGACCTGTGTACCGTTTGTAAGG
ATCTTTACATATTGATGCCACCGAACGATATTAGTATGAATGGTTGGGAG
GATACAAGTTGGTGTCTTCGTACTGTTCTGTTCCGGTTTCAAGAGTTTCA
CGAACTGATAGACCTTGGGGGCCCAGCCACTGATGAGTTGTGATCTGATC
AAAGAGCTCTGCTCTTACTCTGTACAGCATCAGCATGTGAACTTGTTTCG
TCCACATGCTGGACCGTATGTGTCTTGCGGCGTCAATAGGCATATGGACT
CCGTCAATCTTTCGATGGTGGAATCGCTGCGTAAAATAATCATCATGCAG
CTGCCGAATCGCTCGTCATTCACCTCATGCACCGTGATGGTCGCAACGCC
GCATCAGGTACTCGCTGGTAGACGTTGGTGGACAACGGAGCGAGCGGCGA
AAATGGATGCACTGCTTCGACGACGTGAAGGCGATTGTCTTTCTCGTGGG
GCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14896:1..4304+

>mRNA_Ecto-sp13_S_contig14896.3724.1 ID=mRNA_Ecto-sp13_S_contig14896.3724.1|Name=mRNA_Ecto-sp13_S_contig14896.3724.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=603bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14896:1..4304+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCTGGGTGCAGGAGAGTCGGGGAAGAGCACCGTCGTCAAGCAGGCAAG
CAAAGGCAGCATATTGAACGTGAAGATGATATACAAGGGCGGGGTATCGA
AGAAGGAGAAAGATGACTACGCCAGAGCGATCAGACGAAACGTCATCGAG
AGCATGCAGACTCTGATTGAAACGCTCGGGACGCTCGGATTAGCGCTGAA
AGGCGACGATCAGGAAGGGCTGAAGGCTGCTATGGAAAATATTGCCGCGT
TGACTCCCGAAGACACCCTGACCCCGGAGATAGCGGAGGATGTGTCCAAG
CTATGGGCAGACGAGGGAATGCAGGCGAGCGAAATCAAGCGTGCTAGAAG
GTCGGAGTTCTGGGCTCTTGACGCGACGCCCTACTACCTGCAGGAGGCGC
GTCGATTGGCAGATCCGGAGCTAGAGGTTACCGACGAGGACATGATAATG
ACTAGGACCAGGACTACGGGAATTATCGTTACCGAGTTTTCGGACAATCC
TTACACGTACTCGCTGGTAGACGTTGGTGGACAACGGAGCGAGCGGCGAA
AATGGATGCACTGCTTCGACGACGTGAAGGCGATTGTCTTTCTCGTGGGG
CTG
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