mRNA_Ecto-sp13_S_contig14894.3723.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14894.3723.1 vs. uniprot
Match: A0A6H5L299_9PHAE (Beta-galactosidase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L299_9PHAE) HSP 1 Score: 504 bits (1298), Expect = 4.490e-159 Identity = 250/264 (94.70%), Postives = 256/264 (96.97%), Query Frame = 3
Query: 3 SHLERWRASGLCASDPPVFRTQRVRVEKSTAQECIIRVKTRCASRCGHVSLFDIATEIRVSPGGSLEMTAEVEPLKGVTTRDCLSLARVGVLLQLPSGFGRVEWFGKGPFECYQDRKHGATTGVFSGTVEDQHVPYMVPSENGGKADVRWMALRKGEGGAGLLMQAERGAVFQAASVSLHSAAELHKAKRTVDLAPRTSSEDPVYVHLDHRSMGVGGDNSWYPDVVHREYTVPADKAYSFRVRLRALVPGAAASLAALVPGASS 794
SHLERWRASGLCAS+PPVFRTQ VRV+KST QEC+IRVKTRCASRCG VSLFDIATEIRVSPGG+LEMTAEVEPLKGVTTRDCLSLARVG+LLQLP GFGRVEWFGKGPFECYQDRKHGATTGVFSGTVEDQHVPYMVPSENGGKADVRWMALRKGEGGAGLLMQAE GAVFQAASVSLHSAAELHKAKRTVDLAPRTSSEDPV+VHLDHRSMGVGGDNSWYPDVVHREYTVPADKAYSFRVRLRALVPGAAA LAAL PGA S
Sbjct: 1293 SHLERWRASGLCASNPPVFRTQGVRVDKSTPQECLIRVKTRCASRCGQVSLFDIATEIRVSPGGTLEMTAEVEPLKGVTTRDCLSLARVGILLQLPPGFGRVEWFGKGPFECYQDRKHGATTGVFSGTVEDQHVPYMVPSENGGKADVRWMALRKGEGGAGLLMQAETGAVFQAASVSLHSAAELHKAKRTVDLAPRTSSEDPVFVHLDHRSMGVGGDNSWYPDVVHREYTVPADKAYSFRVRLRALVPGAAAPLAALAPGARS 1556
BLAST of mRNA_Ecto-sp13_S_contig14894.3723.1 vs. uniprot
Match: A0A4D9D5D8_9STRA (Beta-galactosidase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5D8_9STRA) HSP 1 Score: 162 bits (410), Expect = 3.520e-38 Identity = 103/269 (38.29%), Postives = 132/269 (49.07%), Query Frame = 3
Query: 3 SHLERWRASGLCASDPPVFRTQRVRVEKSTAQECIIRVKTRCASRCGHVSLFDIATEIRVSPGGSLEMTAEVEPLKGVTTRDCLSLARVGVLLQLPSGFGRVEWFGKGPFECYQDRKHGATTGVFSGTVEDQHVPYMVPSENGGKADVRWMALRKGEGGAGLLMQAERGAVFQAA--------------------SVSLHSAAELHKAKRTVDLAPRTSSEDPVYVHLDHRSMGVGGDNSWYPDVVHREYTVPADKAYSFRVRLRALVP 749
S+ RWR GLC + V +T + I+ T ++ G L D+ T V ++M +V L T+ L L RVGV LQLP F V W G GP E Y DRK V V D H PY+VPSENGG+ADVRW ALR E GLL++ G V + + S+HS EL +A RT +L P +YVH+DHR MGVGGDN+W PD++H E+ VP + + V L LVP
Sbjct: 1054 SYYARWRRLGLCLDGLETSVQEVTPVVHTTKRVEILVRATVSTAQAG--PLLDVQTRYIVYGSMDVKMGIKVVSLYENQTKAPLHLPRVGVALQLPREFTDVSWLGLGPHESYSDRKRSGLLDVHHAHVRDLHTPYVVPSENGGRADVRWAALRDPESKMGLLLRCTNGPVHEVEDEGTPEKRNKSVHTPGTFQFNASMHSVRELEQATRTCEL-PTWEEAQRLYVHVDHRHMGVGGDNTWEPDLIHSEFLVPCVGTWEYDVYLSPLVP 1319
BLAST of mRNA_Ecto-sp13_S_contig14894.3723.1 vs. uniprot
Match: A0A453GP05_AEGTS (Beta-galactosidase n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453GP05_AEGTS) HSP 1 Score: 150 bits (379), Expect = 1.040e-36 Identity = 87/199 (43.72%), Postives = 108/199 (54.27%), Query Frame = 3
Query: 153 LFDIATEIRVSPGGSLEMTAEVEPLKGVTTRDCLSLARVGVLLQLPSGFGRVEWFGKGPFECYQDRKHGATTGVFSGTVEDQHVPYMVPSENGGKADVRWMALRKGEGGAGLLMQAERGAVFQAASVSLHSAAELHKAKRTVDLAPRTSSEDPVYVHLDHRSMGVGGDNSWYPDVVHREYTVPADKAYSFRVRLRALVP 749
LF + R+ G + + EV P D L RVGV+ V W+GKGPFECY DRK A GV+ +VED HVPY+VP E GG+ADVRW+AL+ +G GL + S S + AAEL +A L D + VHLDHR MGVGGD+SW P VH EY +P +Y F +RLR L P
Sbjct: 157 LFRVHMRCRIYESGDVILDYEVNPKS-----DLPPLPRVGVVFNAEKSLNHVTWYGKGPFECYPDRKAAAHVGVYESSVEDLHVPYIVPGECGGRADVRWVALKNADG-FGLFASTHGESPPMQVSASYYGAAELDRATHQHKLV----KGDDIEVHLDHRHMGVGGDDSWTP-CVHEEYLLPPAASYRFSLRLRPLSP 344
BLAST of mRNA_Ecto-sp13_S_contig14894.3723.1 vs. uniprot
Match: I1HVA3_BRADI (Beta-galactosidase n=2 Tax=Brachypodium distachyon TaxID=15368 RepID=I1HVA3_BRADI) HSP 1 Score: 157 bits (397), Expect = 1.390e-36 Identity = 99/263 (37.64%), Postives = 134/263 (50.95%), Query Frame = 3
Query: 3 SHLERWRASGLCASDPPVFRTQRVRVEKSTAQECIIRVKTRCASRCGHV--------------SLFDIATEIRVSPGGSLEMTAEVEPLKGVTTRDCLSLARVGVLLQLPSGFGRVEWFGKGPFECYQDRKHGATTGVFSGTVEDQHVPYMVPSENGGKADVRWMALRKGEGGAGLLMQAERGAVFQAASVSLHSAAELHKAKRTVDLAPRTSSEDPVYVHLDHRSMGVGGDNSWYPDVVHREYTVPADKAYSFRVRLRALVP 749
S+ RWR + L D VFR+ + V++ + + + T GH+ +LF + R+ G + + EV P D L R+G++ V W+G+GPFECY DRK A GV+ +VED HVPY+VP E GG+ADVRW ALR EG GL + S S + AAEL +A L D + VHLDHR MG+GGD+SW P VH +Y +P D+ Y+F VRLR L+P
Sbjct: 859 SYATRWREAFL---DNIVFRSSQFSVKE--LPDHAVEISTTYYGLPGHLVKPDDAALSEAPESTLFQVPMRCRMYESGDVILEYEVNPKS-----DLPPLPRIGIVFNTEKSLSHVTWYGRGPFECYPDRKAAAHVGVYESSVEDLHVPYIVPGECGGRADVRWTALRNAEG-FGLFASVHGESPPMQMSASYYGAAELDRATHKHKLV----KGDDIEVHLDHRHMGLGGDDSWTP-CVHEQYLLPPDRRYAFSVRLRPLLP 1105
BLAST of mRNA_Ecto-sp13_S_contig14894.3723.1 vs. uniprot
Match: A0A0A9PK18_ARUDO (Beta-galactosidase n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9PK18_ARUDO) HSP 1 Score: 139 bits (351), Expect = 1.320e-34 Identity = 81/191 (42.41%), Postives = 104/191 (54.45%), Query Frame = 3
Query: 177 RVSPGGSLEMTAEVEPLKGVTTRDCLSLARVGVLLQLPSGFGRVEWFGKGPFECYQDRKHGATTGVFSGTVEDQHVPYMVPSENGGKADVRWMALRKGEGGAGLLMQAERGAVFQAASVSLHSAAELHKAKRTVDLAPRTSSEDPVYVHLDHRSMGVGGDNSWYPDVVHREYTVPADKAYSFRVRLRALVP 749
R+ G + + EV P D L RVGV+ V W+G+GPFECY DRK A GV+ +VED HVPY+ P E GG+ADVRWMALR +G GL + S S + AEL +A L D + VHLDHR MG+GGD+SW P VH +Y +P + Y+F +RL L+P
Sbjct: 4 RIYESGDVILEYEVNP-----KADLPPLPRVGVVFNAEKSLSHVTWYGRGPFECYPDRKAAAHVGVYESSVEDLHVPYIAPGECGGRADVRWMALRNADG-VGLYASVHGDSPAMQMSASYYGTAELDRATHNHMLV----KGDDIEVHLDHRHMGLGGDDSWSP-CVHEQYLLPPTR-YAFSMRLCPLLP 182
BLAST of mRNA_Ecto-sp13_S_contig14894.3723.1 vs. uniprot
Match: A0A453GP09_AEGTS (Beta-galactosidase n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453GP09_AEGTS) HSP 1 Score: 150 bits (379), Expect = 2.030e-34 Identity = 87/199 (43.72%), Postives = 108/199 (54.27%), Query Frame = 3
Query: 153 LFDIATEIRVSPGGSLEMTAEVEPLKGVTTRDCLSLARVGVLLQLPSGFGRVEWFGKGPFECYQDRKHGATTGVFSGTVEDQHVPYMVPSENGGKADVRWMALRKGEGGAGLLMQAERGAVFQAASVSLHSAAELHKAKRTVDLAPRTSSEDPVYVHLDHRSMGVGGDNSWYPDVVHREYTVPADKAYSFRVRLRALVP 749
LF + R+ G + + EV P D L RVGV+ V W+GKGPFECY DRK A GV+ +VED HVPY+VP E GG+ADVRW+AL+ +G GL + S S + AAEL +A L D + VHLDHR MGVGGD+SW P VH EY +P +Y F +RLR L P
Sbjct: 684 LFRVHMRCRIYESGDVILDYEVNPKS-----DLPPLPRVGVVFNAEKSLNHVTWYGKGPFECYPDRKAAAHVGVYESSVEDLHVPYIVPGECGGRADVRWVALKNADG-FGLFASTHGESPPMQVSASYYGAAELDRATHQHKLV----KGDDIEVHLDHRHMGVGGDDSWTP-CVHEEYLLPPAASYRFSLRLRPLSP 871
BLAST of mRNA_Ecto-sp13_S_contig14894.3723.1 vs. uniprot
Match: UPI00098E7475 (uncharacterized protein LOC109840411 isoform X1 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E7475) HSP 1 Score: 149 bits (377), Expect = 4.560e-34 Identity = 99/254 (38.98%), Postives = 127/254 (50.00%), Query Frame = 3
Query: 3 SHLERWRASGLCASDPPVFRTQRVRVEKSTAQECIIRVKTRCASRCGHVSL-----FDIATEIRVSPGGSLEMTAEVEPLKGVTTRDCLSLARVGVLLQLPSGFGRVEWFGKGPFECYQDRKHGATTGVFSGTVEDQHVPYMVPSENGGKADVRWMALRKGEGGAGLLMQAERGAVFQAASVSLHSAAELHKAKRTVDLAPRTSSEDPVYVHLDHRSMGVGGDNSWYPDVVHREYTVPADKAYSFRVRLRALVP 749
S+ +W+AS L D FRT+ +++ T C H++ ++ + G + + + P RD L RVGV L L V W+GKGPFECY DRK A GV+ VED HVPY+VPSE GG+ADVRW+A R G GG GL + S S + AEL +A +L D + VHLDH+ MGVGGD+SW P VH +Y VP YSF VRL L P
Sbjct: 850 SYASKWKASFL---DTLTFRTENCSIKQVT-------------DNCVHITTVYTGHLNVNVGYWIYGSGDVIIEYNINP-----KRDLPPLPRVGVELHLDKSLNNVTWYGKGPFECYPDRKEAAHVGVYESNVEDMHVPYIVPSECGGRADVRWVAFRNG-GGHGLFASIYGTSPPMQMSASYYGTAELDRATHNHELC----KGDDIEVHLDHKHMGVGGDDSWSP-CVHDQYLVPP-VPYSFSVRLCPLYP 1075
BLAST of mRNA_Ecto-sp13_S_contig14894.3723.1 vs. uniprot
Match: B8A0J1_MAIZE (Beta-galactosidase n=1 Tax=Zea mays TaxID=4577 RepID=B8A0J1_MAIZE) HSP 1 Score: 144 bits (363), Expect = 6.730e-34 Identity = 85/199 (42.71%), Postives = 110/199 (55.28%), Query Frame = 3
Query: 153 LFDIATEIRVSPGGSLEMTAEVEPLKGVTTRDCLSLARVGVLLQLPSGFGRVEWFGKGPFECYQDRKHGATTGVFSGTVEDQHVPYMVPSENGGKADVRWMALRKGEGGAGLLMQAERGAVFQAASVSLHSAAELHKAKRTVDLAPRTSSEDPVYVHLDHRSMGVGGDNSWYPDVVHREYTVPADKAYSFRVRLRALVP 749
LF + R+ G + + EV P D L RVGV+ V W+G+GPFECY DRK A GV+ +VE+ HVPY+ P E GG+ADVRW+ALR GG GL A G+ S S + AAEL +A R D + VHLDHR MG+GGD+SW P VH +Y +P + Y+F +RL L+P
Sbjct: 230 LFRVKMVCRIHGSGDVVLDYEVNPRS-----DLPPLPRVGVVFSAGRSLSHVTWYGRGPFECYPDRKAAAHVGVYESSVEELHVPYIAPVECGGRADVRWVALRDA-GGLGLYASAHGGSPPMQMSASYYGAAELDRATHV----HRLVKGDDIEVHLDHRHMGLGGDDSWSP-CVHEQYLLPPTR-YAFSLRLCPLLP 416
BLAST of mRNA_Ecto-sp13_S_contig14894.3723.1 vs. uniprot
Match: A0A446QFS3_TRITD (Beta-galactosidase n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446QFS3_TRITD) HSP 1 Score: 143 bits (361), Expect = 2.190e-33 Identity = 84/199 (42.21%), Postives = 106/199 (53.27%), Query Frame = 3
Query: 153 LFDIATEIRVSPGGSLEMTAEVEPLKGVTTRDCLSLARVGVLLQLPSGFGRVEWFGKGPFECYQDRKHGATTGVFSGTVEDQHVPYMVPSENGGKADVRWMALRKGEGGAGLLMQAERGAVFQAASVSLHSAAELHKAKRTVDLAPRTSSEDPVYVHLDHRSMGVGGDNSWYPDVVHREYTVPADKAYSFRVRLRALVP 749
LF + + G + + EV P D L RVGV+ V W+G+GPFECY DRK A GV+ VED HVPY+VP E GG+ADVRW+AL+ +G GL + S S + AAEL +A L D + VHLDHR MGVGGD+SW P VH EY + +Y F +RLR L+P
Sbjct: 262 LFRVHMRCLIYESGDVILEYEVNPKS-----DLPPLPRVGVVFNAEKSLNHVTWYGRGPFECYPDRKAAAHVGVYESGVEDLHVPYIVPGECGGRADVRWVALKNADG-FGLFASTHGESPPMQVSASYYGAAELDRATHQHKLV----KGDDIEVHLDHRHMGVGGDDSWTP-CVHEEYLLSPAASYRFSLRLRPLLP 449
BLAST of mRNA_Ecto-sp13_S_contig14894.3723.1 vs. uniprot
Match: UPI001F5D8F99 (beta-galactosidase n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D8F99) HSP 1 Score: 147 bits (371), Expect = 2.660e-33 Identity = 84/201 (41.79%), Postives = 115/201 (57.21%), Query Frame = 3
Query: 150 SLFDIATEIRVSPGGSLEMTAEVEPLKGVTTRDCLSLARVGVLLQLPSGFGRVEWFGKGPFECYQDRKHGATTGVFSGTVEDQHVPYMVPSENGGKADVRWMALRKGEG-GAGLLMQAERGAVFQAASVSLHSAAELHKAKRTVDLAPRTSSEDPVYVHLDHRSMGVGGDNSWYPDVVHREYTVPADKAYSFRVRLRALVP 749
+LF + R+ G + + EV P D + RVG++ V W+G+GPFECY DRK A GV+ +V+D HVPY+VP E GG+ADVRW+ALR +G G M +E ++ Q S S + A EL++A L D + VHLDHR MGVGGD+SW P VH +Y +P +Y+F VRLR ++P
Sbjct: 919 ALFRVHMRCRIYESGDVVLEYEVNPKS-----DLPPIPRVGIVFNAEKSLDHVTWYGRGPFECYPDRKAAAHVGVYESSVDDLHVPYIVPGECGGRADVRWVALRNADGYGIFASMHSEESSLMQM-SASYYGATELNRATHNHKLV----KGDDIEVHLDHRHMGVGGDDSWTP-CVHEQYLLPP-VSYAFSVRLRPVLP 1107 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14894.3723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14894.3723.1 >prot_Ecto-sp13_S_contig14894.3723.1 ID=prot_Ecto-sp13_S_contig14894.3723.1|Name=mRNA_Ecto-sp13_S_contig14894.3723.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=198bp MTAEVEPLKGVTTRDCLSLARVGVLLQLPSGFGRVEWFGKGPFECYQDRKback to top mRNA from alignment at Ecto-sp13_S_contig14894:408..4123- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14894.3723.1 ID=mRNA_Ecto-sp13_S_contig14894.3723.1|Name=mRNA_Ecto-sp13_S_contig14894.3723.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3716bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14894:408..4123- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14894:408..4123- >mRNA_Ecto-sp13_S_contig14894.3723.1 ID=mRNA_Ecto-sp13_S_contig14894.3723.1|Name=mRNA_Ecto-sp13_S_contig14894.3723.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=594bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14894:408..4123- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |