mRNA_Ecto-sp13_S_contig14894.3723.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14894.3723.1
Unique NamemRNA_Ecto-sp13_S_contig14894.3723.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14894.3723.1 vs. uniprot
Match: A0A6H5L299_9PHAE (Beta-galactosidase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L299_9PHAE)

HSP 1 Score: 504 bits (1298), Expect = 4.490e-159
Identity = 250/264 (94.70%), Postives = 256/264 (96.97%), Query Frame = 3
Query:    3 SHLERWRASGLCASDPPVFRTQRVRVEKSTAQECIIRVKTRCASRCGHVSLFDIATEIRVSPGGSLEMTAEVEPLKGVTTRDCLSLARVGVLLQLPSGFGRVEWFGKGPFECYQDRKHGATTGVFSGTVEDQHVPYMVPSENGGKADVRWMALRKGEGGAGLLMQAERGAVFQAASVSLHSAAELHKAKRTVDLAPRTSSEDPVYVHLDHRSMGVGGDNSWYPDVVHREYTVPADKAYSFRVRLRALVPGAAASLAALVPGASS 794
            SHLERWRASGLCAS+PPVFRTQ VRV+KST QEC+IRVKTRCASRCG VSLFDIATEIRVSPGG+LEMTAEVEPLKGVTTRDCLSLARVG+LLQLP GFGRVEWFGKGPFECYQDRKHGATTGVFSGTVEDQHVPYMVPSENGGKADVRWMALRKGEGGAGLLMQAE GAVFQAASVSLHSAAELHKAKRTVDLAPRTSSEDPV+VHLDHRSMGVGGDNSWYPDVVHREYTVPADKAYSFRVRLRALVPGAAA LAAL PGA S
Sbjct: 1293 SHLERWRASGLCASNPPVFRTQGVRVDKSTPQECLIRVKTRCASRCGQVSLFDIATEIRVSPGGTLEMTAEVEPLKGVTTRDCLSLARVGILLQLPPGFGRVEWFGKGPFECYQDRKHGATTGVFSGTVEDQHVPYMVPSENGGKADVRWMALRKGEGGAGLLMQAETGAVFQAASVSLHSAAELHKAKRTVDLAPRTSSEDPVFVHLDHRSMGVGGDNSWYPDVVHREYTVPADKAYSFRVRLRALVPGAAAPLAALAPGARS 1556          
BLAST of mRNA_Ecto-sp13_S_contig14894.3723.1 vs. uniprot
Match: A0A4D9D5D8_9STRA (Beta-galactosidase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5D8_9STRA)

HSP 1 Score: 162 bits (410), Expect = 3.520e-38
Identity = 103/269 (38.29%), Postives = 132/269 (49.07%), Query Frame = 3
Query:    3 SHLERWRASGLCASDPPVFRTQRVRVEKSTAQECIIRVKTRCASRCGHVSLFDIATEIRVSPGGSLEMTAEVEPLKGVTTRDCLSLARVGVLLQLPSGFGRVEWFGKGPFECYQDRKHGATTGVFSGTVEDQHVPYMVPSENGGKADVRWMALRKGEGGAGLLMQAERGAVFQAA--------------------SVSLHSAAELHKAKRTVDLAPRTSSEDPVYVHLDHRSMGVGGDNSWYPDVVHREYTVPADKAYSFRVRLRALVP 749
            S+  RWR  GLC         +   V  +T +  I+   T   ++ G   L D+ T   V     ++M  +V  L    T+  L L RVGV LQLP  F  V W G GP E Y DRK      V    V D H PY+VPSENGG+ADVRW ALR  E   GLL++   G V +                      + S+HS  EL +A RT +L P       +YVH+DHR MGVGGDN+W PD++H E+ VP    + + V L  LVP
Sbjct: 1054 SYYARWRRLGLCLDGLETSVQEVTPVVHTTKRVEILVRATVSTAQAG--PLLDVQTRYIVYGSMDVKMGIKVVSLYENQTKAPLHLPRVGVALQLPREFTDVSWLGLGPHESYSDRKRSGLLDVHHAHVRDLHTPYVVPSENGGRADVRWAALRDPESKMGLLLRCTNGPVHEVEDEGTPEKRNKSVHTPGTFQFNASMHSVRELEQATRTCEL-PTWEEAQRLYVHVDHRHMGVGGDNTWEPDLIHSEFLVPCVGTWEYDVYLSPLVP 1319          
BLAST of mRNA_Ecto-sp13_S_contig14894.3723.1 vs. uniprot
Match: A0A453GP05_AEGTS (Beta-galactosidase n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453GP05_AEGTS)

HSP 1 Score: 150 bits (379), Expect = 1.040e-36
Identity = 87/199 (43.72%), Postives = 108/199 (54.27%), Query Frame = 3
Query:  153 LFDIATEIRVSPGGSLEMTAEVEPLKGVTTRDCLSLARVGVLLQLPSGFGRVEWFGKGPFECYQDRKHGATTGVFSGTVEDQHVPYMVPSENGGKADVRWMALRKGEGGAGLLMQAERGAVFQAASVSLHSAAELHKAKRTVDLAPRTSSEDPVYVHLDHRSMGVGGDNSWYPDVVHREYTVPADKAYSFRVRLRALVP 749
            LF +    R+   G + +  EV P       D   L RVGV+         V W+GKGPFECY DRK  A  GV+  +VED HVPY+VP E GG+ADVRW+AL+  +G  GL       +     S S + AAEL +A     L       D + VHLDHR MGVGGD+SW P  VH EY +P   +Y F +RLR L P
Sbjct:  157 LFRVHMRCRIYESGDVILDYEVNPKS-----DLPPLPRVGVVFNAEKSLNHVTWYGKGPFECYPDRKAAAHVGVYESSVEDLHVPYIVPGECGGRADVRWVALKNADG-FGLFASTHGESPPMQVSASYYGAAELDRATHQHKLV----KGDDIEVHLDHRHMGVGGDDSWTP-CVHEEYLLPPAASYRFSLRLRPLSP 344          
BLAST of mRNA_Ecto-sp13_S_contig14894.3723.1 vs. uniprot
Match: I1HVA3_BRADI (Beta-galactosidase n=2 Tax=Brachypodium distachyon TaxID=15368 RepID=I1HVA3_BRADI)

HSP 1 Score: 157 bits (397), Expect = 1.390e-36
Identity = 99/263 (37.64%), Postives = 134/263 (50.95%), Query Frame = 3
Query:    3 SHLERWRASGLCASDPPVFRTQRVRVEKSTAQECIIRVKTRCASRCGHV--------------SLFDIATEIRVSPGGSLEMTAEVEPLKGVTTRDCLSLARVGVLLQLPSGFGRVEWFGKGPFECYQDRKHGATTGVFSGTVEDQHVPYMVPSENGGKADVRWMALRKGEGGAGLLMQAERGAVFQAASVSLHSAAELHKAKRTVDLAPRTSSEDPVYVHLDHRSMGVGGDNSWYPDVVHREYTVPADKAYSFRVRLRALVP 749
            S+  RWR + L   D  VFR+ +  V++    +  + + T      GH+              +LF +    R+   G + +  EV P       D   L R+G++         V W+G+GPFECY DRK  A  GV+  +VED HVPY+VP E GG+ADVRW ALR  EG  GL       +     S S + AAEL +A     L       D + VHLDHR MG+GGD+SW P  VH +Y +P D+ Y+F VRLR L+P
Sbjct:  859 SYATRWREAFL---DNIVFRSSQFSVKE--LPDHAVEISTTYYGLPGHLVKPDDAALSEAPESTLFQVPMRCRMYESGDVILEYEVNPKS-----DLPPLPRIGIVFNTEKSLSHVTWYGRGPFECYPDRKAAAHVGVYESSVEDLHVPYIVPGECGGRADVRWTALRNAEG-FGLFASVHGESPPMQMSASYYGAAELDRATHKHKLV----KGDDIEVHLDHRHMGLGGDDSWTP-CVHEQYLLPPDRRYAFSVRLRPLLP 1105          
BLAST of mRNA_Ecto-sp13_S_contig14894.3723.1 vs. uniprot
Match: A0A0A9PK18_ARUDO (Beta-galactosidase n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9PK18_ARUDO)

HSP 1 Score: 139 bits (351), Expect = 1.320e-34
Identity = 81/191 (42.41%), Postives = 104/191 (54.45%), Query Frame = 3
Query:  177 RVSPGGSLEMTAEVEPLKGVTTRDCLSLARVGVLLQLPSGFGRVEWFGKGPFECYQDRKHGATTGVFSGTVEDQHVPYMVPSENGGKADVRWMALRKGEGGAGLLMQAERGAVFQAASVSLHSAAELHKAKRTVDLAPRTSSEDPVYVHLDHRSMGVGGDNSWYPDVVHREYTVPADKAYSFRVRLRALVP 749
            R+   G + +  EV P       D   L RVGV+         V W+G+GPFECY DRK  A  GV+  +VED HVPY+ P E GG+ADVRWMALR  +G  GL       +     S S +  AEL +A     L       D + VHLDHR MG+GGD+SW P  VH +Y +P  + Y+F +RL  L+P
Sbjct:    4 RIYESGDVILEYEVNP-----KADLPPLPRVGVVFNAEKSLSHVTWYGRGPFECYPDRKAAAHVGVYESSVEDLHVPYIAPGECGGRADVRWMALRNADG-VGLYASVHGDSPAMQMSASYYGTAELDRATHNHMLV----KGDDIEVHLDHRHMGLGGDDSWSP-CVHEQYLLPPTR-YAFSMRLCPLLP 182          
BLAST of mRNA_Ecto-sp13_S_contig14894.3723.1 vs. uniprot
Match: A0A453GP09_AEGTS (Beta-galactosidase n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453GP09_AEGTS)

HSP 1 Score: 150 bits (379), Expect = 2.030e-34
Identity = 87/199 (43.72%), Postives = 108/199 (54.27%), Query Frame = 3
Query:  153 LFDIATEIRVSPGGSLEMTAEVEPLKGVTTRDCLSLARVGVLLQLPSGFGRVEWFGKGPFECYQDRKHGATTGVFSGTVEDQHVPYMVPSENGGKADVRWMALRKGEGGAGLLMQAERGAVFQAASVSLHSAAELHKAKRTVDLAPRTSSEDPVYVHLDHRSMGVGGDNSWYPDVVHREYTVPADKAYSFRVRLRALVP 749
            LF +    R+   G + +  EV P       D   L RVGV+         V W+GKGPFECY DRK  A  GV+  +VED HVPY+VP E GG+ADVRW+AL+  +G  GL       +     S S + AAEL +A     L       D + VHLDHR MGVGGD+SW P  VH EY +P   +Y F +RLR L P
Sbjct:  684 LFRVHMRCRIYESGDVILDYEVNPKS-----DLPPLPRVGVVFNAEKSLNHVTWYGKGPFECYPDRKAAAHVGVYESSVEDLHVPYIVPGECGGRADVRWVALKNADG-FGLFASTHGESPPMQVSASYYGAAELDRATHQHKLV----KGDDIEVHLDHRHMGVGGDDSWTP-CVHEEYLLPPAASYRFSLRLRPLSP 871          
BLAST of mRNA_Ecto-sp13_S_contig14894.3723.1 vs. uniprot
Match: UPI00098E7475 (uncharacterized protein LOC109840411 isoform X1 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E7475)

HSP 1 Score: 149 bits (377), Expect = 4.560e-34
Identity = 99/254 (38.98%), Postives = 127/254 (50.00%), Query Frame = 3
Query:    3 SHLERWRASGLCASDPPVFRTQRVRVEKSTAQECIIRVKTRCASRCGHVSL-----FDIATEIRVSPGGSLEMTAEVEPLKGVTTRDCLSLARVGVLLQLPSGFGRVEWFGKGPFECYQDRKHGATTGVFSGTVEDQHVPYMVPSENGGKADVRWMALRKGEGGAGLLMQAERGAVFQAASVSLHSAAELHKAKRTVDLAPRTSSEDPVYVHLDHRSMGVGGDNSWYPDVVHREYTVPADKAYSFRVRLRALVP 749
            S+  +W+AS L   D   FRT+   +++ T               C H++       ++     +   G + +   + P      RD   L RVGV L L      V W+GKGPFECY DRK  A  GV+   VED HVPY+VPSE GG+ADVRW+A R G GG GL       +     S S +  AEL +A    +L       D + VHLDH+ MGVGGD+SW P  VH +Y VP    YSF VRL  L P
Sbjct:  850 SYASKWKASFL---DTLTFRTENCSIKQVT-------------DNCVHITTVYTGHLNVNVGYWIYGSGDVIIEYNINP-----KRDLPPLPRVGVELHLDKSLNNVTWYGKGPFECYPDRKEAAHVGVYESNVEDMHVPYIVPSECGGRADVRWVAFRNG-GGHGLFASIYGTSPPMQMSASYYGTAELDRATHNHELC----KGDDIEVHLDHKHMGVGGDDSWSP-CVHDQYLVPP-VPYSFSVRLCPLYP 1075          
BLAST of mRNA_Ecto-sp13_S_contig14894.3723.1 vs. uniprot
Match: B8A0J1_MAIZE (Beta-galactosidase n=1 Tax=Zea mays TaxID=4577 RepID=B8A0J1_MAIZE)

HSP 1 Score: 144 bits (363), Expect = 6.730e-34
Identity = 85/199 (42.71%), Postives = 110/199 (55.28%), Query Frame = 3
Query:  153 LFDIATEIRVSPGGSLEMTAEVEPLKGVTTRDCLSLARVGVLLQLPSGFGRVEWFGKGPFECYQDRKHGATTGVFSGTVEDQHVPYMVPSENGGKADVRWMALRKGEGGAGLLMQAERGAVFQAASVSLHSAAELHKAKRTVDLAPRTSSEDPVYVHLDHRSMGVGGDNSWYPDVVHREYTVPADKAYSFRVRLRALVP 749
            LF +    R+   G + +  EV P       D   L RVGV+         V W+G+GPFECY DRK  A  GV+  +VE+ HVPY+ P E GG+ADVRW+ALR   GG GL   A  G+     S S + AAEL +A        R    D + VHLDHR MG+GGD+SW P  VH +Y +P  + Y+F +RL  L+P
Sbjct:  230 LFRVKMVCRIHGSGDVVLDYEVNPRS-----DLPPLPRVGVVFSAGRSLSHVTWYGRGPFECYPDRKAAAHVGVYESSVEELHVPYIAPVECGGRADVRWVALRDA-GGLGLYASAHGGSPPMQMSASYYGAAELDRATHV----HRLVKGDDIEVHLDHRHMGLGGDDSWSP-CVHEQYLLPPTR-YAFSLRLCPLLP 416          
BLAST of mRNA_Ecto-sp13_S_contig14894.3723.1 vs. uniprot
Match: A0A446QFS3_TRITD (Beta-galactosidase n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446QFS3_TRITD)

HSP 1 Score: 143 bits (361), Expect = 2.190e-33
Identity = 84/199 (42.21%), Postives = 106/199 (53.27%), Query Frame = 3
Query:  153 LFDIATEIRVSPGGSLEMTAEVEPLKGVTTRDCLSLARVGVLLQLPSGFGRVEWFGKGPFECYQDRKHGATTGVFSGTVEDQHVPYMVPSENGGKADVRWMALRKGEGGAGLLMQAERGAVFQAASVSLHSAAELHKAKRTVDLAPRTSSEDPVYVHLDHRSMGVGGDNSWYPDVVHREYTVPADKAYSFRVRLRALVP 749
            LF +     +   G + +  EV P       D   L RVGV+         V W+G+GPFECY DRK  A  GV+   VED HVPY+VP E GG+ADVRW+AL+  +G  GL       +     S S + AAEL +A     L       D + VHLDHR MGVGGD+SW P  VH EY +    +Y F +RLR L+P
Sbjct:  262 LFRVHMRCLIYESGDVILEYEVNPKS-----DLPPLPRVGVVFNAEKSLNHVTWYGRGPFECYPDRKAAAHVGVYESGVEDLHVPYIVPGECGGRADVRWVALKNADG-FGLFASTHGESPPMQVSASYYGAAELDRATHQHKLV----KGDDIEVHLDHRHMGVGGDDSWTP-CVHEEYLLSPAASYRFSLRLRPLLP 449          
BLAST of mRNA_Ecto-sp13_S_contig14894.3723.1 vs. uniprot
Match: UPI001F5D8F99 (beta-galactosidase n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D8F99)

HSP 1 Score: 147 bits (371), Expect = 2.660e-33
Identity = 84/201 (41.79%), Postives = 115/201 (57.21%), Query Frame = 3
Query:  150 SLFDIATEIRVSPGGSLEMTAEVEPLKGVTTRDCLSLARVGVLLQLPSGFGRVEWFGKGPFECYQDRKHGATTGVFSGTVEDQHVPYMVPSENGGKADVRWMALRKGEG-GAGLLMQAERGAVFQAASVSLHSAAELHKAKRTVDLAPRTSSEDPVYVHLDHRSMGVGGDNSWYPDVVHREYTVPADKAYSFRVRLRALVP 749
            +LF +    R+   G + +  EV P       D   + RVG++         V W+G+GPFECY DRK  A  GV+  +V+D HVPY+VP E GG+ADVRW+ALR  +G G    M +E  ++ Q  S S + A EL++A     L       D + VHLDHR MGVGGD+SW P  VH +Y +P   +Y+F VRLR ++P
Sbjct:  919 ALFRVHMRCRIYESGDVVLEYEVNPKS-----DLPPIPRVGIVFNAEKSLDHVTWYGRGPFECYPDRKAAAHVGVYESSVDDLHVPYIVPGECGGRADVRWVALRNADGYGIFASMHSEESSLMQM-SASYYGATELNRATHNHKLV----KGDDIEVHLDHRHMGVGGDDSWTP-CVHEQYLLPP-VSYAFSVRLRPVLP 1107          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14894.3723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L299_9PHAE4.490e-15994.70Beta-galactosidase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A4D9D5D8_9STRA3.520e-3838.29Beta-galactosidase n=2 Tax=Monodopsidaceae TaxID=4... [more]
A0A453GP05_AEGTS1.040e-3643.72Beta-galactosidase n=1 Tax=Aegilops tauschii subsp... [more]
I1HVA3_BRADI1.390e-3637.64Beta-galactosidase n=2 Tax=Brachypodium distachyon... [more]
A0A0A9PK18_ARUDO1.320e-3442.41Beta-galactosidase n=1 Tax=Arundo donax TaxID=3570... [more]
A0A453GP09_AEGTS2.030e-3443.72Beta-galactosidase n=1 Tax=Aegilops tauschii subsp... [more]
UPI00098E74754.560e-3438.98uncharacterized protein LOC109840411 isoform X1 n=... [more]
B8A0J1_MAIZE6.730e-3442.71Beta-galactosidase n=1 Tax=Zea mays TaxID=4577 Rep... [more]
A0A446QFS3_TRITD2.190e-3342.21Beta-galactosidase n=1 Tax=Triticum turgidum subsp... [more]
UPI001F5D8F992.660e-3341.79beta-galactosidase n=1 Tax=Lolium rigidum TaxID=89... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14894contigEcto-sp13_S_contig14894:408..4123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score382.1
Seed ortholog evalue1.6e-103
Seed eggNOG ortholog2880.D7FWP3
Model size1846
KEGG rclassRC00049,RC00452
KEGG koko:K01190
KEGG ReactionR01105,R01678,R03355,R04783,R06114
KEGG Pathwayko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.beta-glucuronidase activity
EggNOG OGsCOG3250@1,KOG2024@2759
EC3.2.1.23
Cds size594
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14894.3723.1prot_Ecto-sp13_S_contig14894.3723.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14894 1457..3550 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462794.3537164-UTR-Ecto-sp13_S_contig14894:407..14561681462794.3537164-UTR-Ecto-sp13_S_contig14894:407..1456Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14894 408..1456 -
1681462794.3894575-UTR-Ecto-sp13_S_contig14894:3550..36291681462794.3894575-UTR-Ecto-sp13_S_contig14894:3550..3629Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14894 3551..3629 -
1681462794.3980696-UTR-Ecto-sp13_S_contig14894:3999..41231681462794.3980696-UTR-Ecto-sp13_S_contig14894:3999..4123Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14894 4000..4123 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462794.3642983-CDS-Ecto-sp13_S_contig14894:1456..17321681462794.3642983-CDS-Ecto-sp13_S_contig14894:1456..1732Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14894 1457..1732 -
1681462794.3726938-CDS-Ecto-sp13_S_contig14894:2620..27881681462794.3726938-CDS-Ecto-sp13_S_contig14894:2620..2788Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14894 2621..2788 -
1681462794.381081-CDS-Ecto-sp13_S_contig14894:3400..35501681462794.381081-CDS-Ecto-sp13_S_contig14894:3400..3550Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14894 3401..3550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14894.3723.1

>prot_Ecto-sp13_S_contig14894.3723.1 ID=prot_Ecto-sp13_S_contig14894.3723.1|Name=mRNA_Ecto-sp13_S_contig14894.3723.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=198bp
MTAEVEPLKGVTTRDCLSLARVGVLLQLPSGFGRVEWFGKGPFECYQDRK
HGATTGVFSGTVEDQHVPYMVPSENGGKADVRWMALRKGEGGAGLLMQAE
RGAVFQAASVSLHSAAELHKAKRTVDLAPRTSSEDPVYVHLDHRSMGVGG
DNSWYPDVVHREYTVPADKAYSFRVRLRALVPGAAASLAALVPGASS*
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mRNA from alignment at Ecto-sp13_S_contig14894:408..4123-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14894.3723.1 ID=mRNA_Ecto-sp13_S_contig14894.3723.1|Name=mRNA_Ecto-sp13_S_contig14894.3723.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3716bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14894:408..4123- (Ectocarpus species13 EcNAP12_S_4_19m)
TCAGCCACTTGGAGCGGTGGAGAGCCAGCGGACTCTGCGCGTCGGACCCT CCGGTGTTCCGCACCCAACGCGTGCGTGTGGAGAAGTCCACCGCACAAGA GTGCATCATCAGGGTCAAGACGAGGTCAGTGCCGGTGTCGTCCCCAGACA CCTCAGTCAGCACTCTTCTTGTGTCATTCGTAGAGCAGCACGTTCTTTGT AAGCAGCTTCAAGGCCACTCACTGCCCTTGGGTACGGATGTATGTCTCCT CGCATTGTTCGTTTGAGGAGAGAGTAGAGCTTGTCAGAAGTCGTCGTCTT GCGAGGCAGCAGCCGAAAGCGGGACCAGTTTCAGGTTTGAAGGAAATTCC AAAGGACATCGTCTATCTCTGCTTTTACGTGTCTTTTCGTTCGGCATCAC TGACGTAATCTCCCTGCCCGGTACACCTTGCGTCGCCCCGCCGGGTGCCC CCCCCCCCCCCCCCCACGTTGCACATCGTCGGCCGGCATTGCAGGTGCGC CTCTCGCTGTGGACATGTCTCGCTGTTCGATATCGCCACTGAGATACGAG TGTCCCCCGGAGGAAGCTTGGAGATGACCGCCGAGGTCGAGCCCCTCAAG GGGGTGACGACGCGAGACTGCTTGAGCCTGGCCAGAGTAGGTGTCCTGCT CCAGCTACCCTCTGGGTTTGGGCGGGTGGAGTGGTTCGGCAAGGGGCCCT TCGAGTGTTACCAGGACCGCAAGGTGATGGCTCTGTCTTTTGCTCTCGTG TGTGGTCGACGAAAAATTGCCCGGTTGGCTCGGGGAAACCTTTTTTTGTT GTGTGAGGAAATTGACTTCTCTTTTGGCGCGATGAAGTTGTGTCTTGGTG CGGGGCTTTGTTGTTTTTTCATCACTTTCATGTGGATGCGTTGGCGGCTT CGTACCATTTTCGGAATTCATGCTTTCAAAGTCCTCCGTATGTTGAATGT TTTCGGGAATGCGGGGCACGACGGGTTTCGCCCCCCTGCTCTATGGCGAA TGGTGTCCAACCACCTTCGCTTTTCGCACACACAAGGGTCGCAGGCAGCC CCCGCCAGCTGTGCTTCGGTCGGCCCGTGTGTATCATTCTTCTTTTGGCC TCGTGTGTGGGCGAGTGGACCCTCTGCTGTTATCACATCGTACCCGTTGT TCCTTTCTCTGTGAACTTTTGAGTCTCGCGTGTGCTCTGGTCGGCCCATT CTCGGCGTGGTCATTTGCATTGGTCGATGGTCGATCCGAGAAAAAACCTG TGCCTGTTGTCGGCGGACTCTCGGGGGCGCTCAAGGGCCTGAACTGAAGC CCCTTCTTTCCGCCCGAACACGTGCTTCTTATCAGCACGGTGCGACGACC GGTGTCTTCTCCGGAACGGTGGAGGATCAACACGTGCCGTACATGGTACC CAGCGAGAACGGCGGCAAGGCCGACGTCCGGTGGATGGCGCTCCGTAAGG GGGAAGGGGGTGCTGGGTTGCTTATGCAGGCCGAGAGAGGCGCCGTGTTT CAGGTAAATACATAGAATATGGTACCATTACAAGTAGGACAAAGAGTACT CCGACGGCTTTTTCCTCTCTTTTCCGTTGTCCGAATGCCAAAGAAATGCG ATAGGCAGGTACAGACTTATTGGTTAAAGCGTTGGGAAGGTCTCAGGAAC GGATATGACAGGGTTCCACGGTGAGTGTTGTGGTGGTGAGGGGAAATGCC TCTAGGCATCCATGTGGAGCATAGTTATGCACCTAGGGGACGTGCGCATG AGCGTTGAGTGTGAAAACCGTGGATCGACACAGCCATTTCTACCGTCCCT GGCGAGGGTCGCGGCATCGCGTCTTTTTCATTTCTTGAGCCCTGCGAGAA ATAGGAGCCATCTCCCGTCGCCGATAACTTGCGGCTGCGTTGCAAGCTGG AGGACATGATACTTTCTGAGCGCGGTCGAGGGTCTGAAACATCATCGACC ACGTCTCCGTGCGCTCAGTCTGCCCCCTGCTAACTCCTTCGGTATTTGGT AGTGTTGGTTGACGAGCCGCAACGTCATGCGTATCTCCAACACTCATCAT ACGCGTGGCTTGCCCCGTGCTCCTCACTCGCACGATTGCTCAGAATATCA CCCCCCCCCCCCCCCCCCCGGTGCTTGAAGTGTTGTGGTGCCTACCGAAT GTGAAACGTTTGGCTAGCCGGCATGCCCAGCCAACCCATGGCACATCTGG ATTGGCGCAGCAAACGCAAGGAAGACGACCAGCTCTTTTGCTTCATCGTT GTGAAGCGTAGCATTGGCCGGCGGAACCCGGCATATCGCTCCGTCCCGGC ATTGCACGGATGTGAGGTCTATGATATAACGACTACGGCATGCACTTAAA GGACTACCCCACCCGCCCACCCCCCTCCACCCGCCCGCCAGGCCGCGAGC GTGAGCCTGCACAGCGCGGCGGAGCTCCACAAGGCTAAGCGAACGGTCGA CCTTGCCCCGAGGACGTCCAGCGAAGACCCGGTGTATGTGCACCTCGACC ACCGGTCAATGGGGGTGGGGGGAGACAACTCTTGGTACCCGGACGTGGTT CACCGAGAGTATACGGTGCCGGCGGACAAAGCGTACAGCTTTCGAGTGCG GTTGAGGGCCTTGGTTCCCGGTGCAGCAGCATCGCTAGCGGCGTTAGTGC CGGGCGCTAGTAGCTAACGGCAACAGGACAGTTGAGGGATTGTGCAGTTT GTCCGACTTGCGCTTGCCAAGCCGCCTGTGGTAATAATACGGCTTGAGGT GAGGTCAGTGGCACATATCCCCCTGAGCTATTTGTTGTGATTGCGCATTT TTGAGAATCTCGTGCGCTGGTGTTCTGGTGGCGAGGCTTCGAGTTTTGAT CGATGCAGTCTAGTCTAGATGTCCAAGAGATTCCAGGTTTTACCGGCGAG GGACGAGTTCTTTGGCGGCTCTAGTGTCATTCGTTGGTTCAGTACGCAGC AGTAGGGCTGAGAGTTGGTGTAGTCTTCGGCAACGACGCCATTCCACACT ACTCGTGTAGAGATTTGTTTGGCAGCCAGGCTCTTCGTTTCTATTGGGTT GTGAGCGTTCTACATCGCTCACGAAGCCTTGGCTGTGATCGGTTGCACAT GCTAGATATCAACGGGACTGCGCGTTTCGGCGTATTCGTATTTCGGTGAT GGTGATAACCCGGGAAATGTTGATAATGTTTTGAGGATGCCGAGTAGGTC CCGCCGCACATTGTAGTCAAGTGGTGGAAGCGACAGTTGGTTGGAGGTGG TTCGTACGGATTCACCTTCAGTGACTTCGTGCGGCTCCTCTGCGCGTGGG TGTTCAATAAAAAAAAATCGAAGGCTGGCGGCCGTTTGCACGTGACAGCG GTGTGGATAGGGGTGGCTCCGGAGGAGCCACGTTATGTGTGACGGTGCGT CAGAGCCGTCTTTTGAGGAAAAGGACGACGCCGTAAGATGAAGGAATTTT ATTGGTGCGAGAGAGAGTGACAGCGCTGCAAAGTAGAAACAAAAAAAACA GAGGTCATCGAGGGGTTGTGTGGAGGGTCACTGTTCATCCAGGCCACAAT CTCCAAACGTTCATCCAATTTTGACAGTTCCTTTCACCACGAAAGCAATT ACATTACCCCACTCCCTCCGAGGCGACGAAGATAATTGTTGCTTTTTCTA GCGCGACTCGGATATGGTGCACCGAGACACGCAAAAACGAAGCGAACTCC GACAAGAATGACGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14894:408..4123-

>mRNA_Ecto-sp13_S_contig14894.3723.1 ID=mRNA_Ecto-sp13_S_contig14894.3723.1|Name=mRNA_Ecto-sp13_S_contig14894.3723.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=594bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14894:408..4123- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCGCCGAGGTCGAGCCCCTCAAGGGGGTGACGACGCGAGACTGCTT
GAGCCTGGCCAGAGTAGGTGTCCTGCTCCAGCTACCCTCTGGGTTTGGGC
GGGTGGAGTGGTTCGGCAAGGGGCCCTTCGAGTGTTACCAGGACCGCAAG
CACGGTGCGACGACCGGTGTCTTCTCCGGAACGGTGGAGGATCAACACGT
GCCGTACATGGTACCCAGCGAGAACGGCGGCAAGGCCGACGTCCGGTGGA
TGGCGCTCCGTAAGGGGGAAGGGGGTGCTGGGTTGCTTATGCAGGCCGAG
AGAGGCGCCGTGTTTCAGGCCGCGAGCGTGAGCCTGCACAGCGCGGCGGA
GCTCCACAAGGCTAAGCGAACGGTCGACCTTGCCCCGAGGACGTCCAGCG
AAGACCCGGTGTATGTGCACCTCGACCACCGGTCAATGGGGGTGGGGGGA
GACAACTCTTGGTACCCGGACGTGGTTCACCGAGAGTATACGGTGCCGGC
GGACAAAGCGTACAGCTTTCGAGTGCGGTTGAGGGCCTTGGTTCCCGGTG
CAGCAGCATCGCTAGCGGCGTTAGTGCCGGGCGCTAGTAGCTAA
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