mRNA_Ecto-sp13_S_contig14882.3718.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14882.3718.1
Unique NamemRNA_Ecto-sp13_S_contig14882.3718.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14882.3718.1 vs. uniprot
Match: D8LJQ2_ECTSI (Sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ2_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.350e-30
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 2 
Query:    2 SEDSLQEAMDDVFEYVGLPPSPVEDKAPKNHRDYTPMDEGVRRRLRDFYAPYDGALRQLLRRESLPW 202
            SEDSLQEAMD VFE+VGLPPSPVEDKAPKNHRDY PMDEGVRRRLRDFYAPYD ALRQLLRR+SLPW
Sbjct:  481 SEDSLQEAMDGVFEHVGLPPSPVEDKAPKNHRDYPPMDEGVRRRLRDFYAPYDAALRQLLRRDSLPW 547
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BLAST of mRNA_Ecto-sp13_S_contig14882.3718.1 vs. uniprot
Match: A0A6H5KXX9_9PHAE (Asp_Arg_Hydrox domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX9_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 4.960e-30
Identity = 60/67 (89.55%), Postives = 64/67 (95.52%), Query Frame = 2 
Query:    2 SEDSLQEAMDDVFEYVGLPPSPVEDKAPKNHRDYTPMDEGVRRRLRDFYAPYDGALRQLLRRESLPW 202
            SEDSLQEAM+ VFE+VGLPPSPV+DKAPKNHRDY PMDEGVRRRLRDFYAPYD ALRQLLRR+SLPW
Sbjct:  364 SEDSLQEAMEGVFEHVGLPPSPVKDKAPKNHRDYPPMDEGVRRRLRDFYAPYDAALRQLLRRDSLPW 430
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BLAST of mRNA_Ecto-sp13_S_contig14882.3718.1 vs. uniprot
Match: A0A812UDT8_SYMMI (Kil1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UDT8_SYMMI)

HSP 1 Score: 53.9 bits (128), Expect = 6.860e-5
Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 2 
Query:    8 DSLQEAMDDVFEYVGLPPSPVEDKAPKNHRDYTPMDEGVRRRLRDFYAPYDGALRQLLRRESLPW 202
            D +QE ++ VF ++GLP S + D   KN R Y  ++  V++RL DFY PY+  L +L+ R+ L W
Sbjct:  171 DQVQETLNGVFSFIGLPTSELTDFEAKNTRTYPDVEPEVKQRLADFYRPYNERLYELIGRD-LSW 234
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BLAST of mRNA_Ecto-sp13_S_contig14882.3718.1 vs. uniprot
Match: A0A6G0XY05_9STRA (Asp_Arg_Hydrox domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XY05_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 7.460e-5
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 2 
Query:   11 SLQEAMDDVFEYVGLPPSPVEDKAPKNHRDYTPMDEGVRRRLRDFYAPYDGALRQLL 181
            S Q  +D V +++ LP   + D + +N RDY PMD+  R RLR FYAP++ ALR+LL
Sbjct:  579 STQATLDRVCDFLCLPRFELVDSSRQNTRDYPPMDDATRDRLRAFYAPHNAALRELL 635
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14882.3718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LJQ2_ECTSI1.350e-3092.54Sulfotransferase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5KXX9_9PHAE4.960e-3089.55Asp_Arg_Hydrox domain-containing protein n=1 Tax=E... [more]
A0A812UDT8_SYMMI6.860e-541.54Kil1 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A6G0XY05_9STRA7.460e-547.37Asp_Arg_Hydrox domain-containing protein n=1 Tax=A... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14882contigEcto-sp13_S_contig14882:267..1140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score119.4
Seed ortholog evalue5.8e-25
Seed eggNOG ortholog2880.D8LJQ2
Model size874
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity
EggNOG OGs2CN6N@1,2QU6N@2759
Ec32 ortholog descriptionSulfotransferase
Ec32 orthologEc-17_002890.1
Cds size180
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462793.9219074-UTR-Ecto-sp13_S_contig14882:266..2911681462793.9219074-UTR-Ecto-sp13_S_contig14882:266..291Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14882 267..291 +
1681462793.9461892-UTR-Ecto-sp13_S_contig14882:471..11401681462793.9461892-UTR-Ecto-sp13_S_contig14882:471..1140Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14882 472..1140 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462793.9359977-CDS-Ecto-sp13_S_contig14882:291..4711681462793.9359977-CDS-Ecto-sp13_S_contig14882:291..471Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14882 292..471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14882.3718.1prot_Ecto-sp13_S_contig14882.3718.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14882 292..471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14882.3718.1

>prot_Ecto-sp13_S_contig14882.3718.1 ID=prot_Ecto-sp13_S_contig14882.3718.1|Name=mRNA_Ecto-sp13_S_contig14882.3718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
MDDVFEYVGLPPSPVEDKAPKNHRDYTPMDEGVRRRLRDFYAPYDGALRQ
LLRRESLPW*
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mRNA from alignment at Ecto-sp13_S_contig14882:267..1140+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14882.3718.1 ID=mRNA_Ecto-sp13_S_contig14882.3718.1|Name=mRNA_Ecto-sp13_S_contig14882.3718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=874bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14882:267..1140+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCGAAGACTCGCTTCAAGAGGCCATGGACGACGTTTTCGAGTACGTCG
GGCTCCCCCCTTCGCCGGTGGAAGACAAAGCCCCAAAGAACCACAGGGAC
TACACCCCGATGGACGAAGGCGTTCGCCGCCGGCTGCGAGACTTCTACGC
TCCGTACGATGGCGCGCTGCGGCAGCTGCTGAGGAGAGAATCGCTTCCGT
GGTAGACAGTTATGGCGTCGAGACTTGGATTGAATCGAGGTAGTGAAAAA
CGAAGGTCCGTTATCCACTAGTAGTATTGATGTGGCCTTGGTTTGGTGCC
TTGTTTCAGTGGTTCACGATGCATGTGTGCCTTATTATGCGTTGGTCCTG
GGCGCACTCGTTTTTCACTGCCGTGCAGCGGTAGATTTCATCGACTTTCA
ATCCCGAGATTCAGCAGGGCAAACGCCGTGTATCATTGATGCGCCGTTGT
TTCTGTTGGCCGGAACATTATTGATCTCGAAATTGATCCCGTTCCGAGGG
TTTGATTGCCTCGACACAACAAAACGTAGCAGCCTACCGGGGTTTCGGAG
ATGGTTTTGAGTGATGTCCTCGTCACGAAACGACACTGATGAAATGCGAT
ACTCACAAAAGGAAACCTGCGAGACCTCGTGGCTGTTAAAGGCCGCCGGT
TCGACTCTCTCCAGAGTGAAAGGTCTCGTAGTTTTGAAGGAAACGAGAGT
GTCATTCCTCAGCGCGACCGGCTTCTGAACCCGTCTTTGTTAAGATCTTG
AAGGTAAGCACCGCGCAAGAGAAAATGTGGAGCTGGGGTGAGTGAACAAA
GAGAAAGGTGCAGACCCTGCTGCCATGTCTCGTCACCTCCGTGAAAATCA
ATGCACACGTCTGCATGTCATCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14882:267..1140+

>mRNA_Ecto-sp13_S_contig14882.3718.1 ID=mRNA_Ecto-sp13_S_contig14882.3718.1|Name=mRNA_Ecto-sp13_S_contig14882.3718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14882:267..1140+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGACGTTTTCGAGTACGTCGGGCTCCCCCCTTCGCCGGTGGAAGA
CAAAGCCCCAAAGAACCACAGGGACTACACCCCGATGGACGAAGGCGTTC
GCCGCCGGCTGCGAGACTTCTACGCTCCGTACGATGGCGCGCTGCGGCAG
CTGCTGAGGAGAGAATCGCTTCCGTGGTAG
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