mRNA_Ecto-sp13_S_contig14880.3716.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14880.3716.1 vs. uniprot
Match: A0A6H5KV27_9PHAE (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV27_9PHAE) HSP 1 Score: 692 bits (1787), Expect = 1.400e-239 Identity = 498/613 (81.24%), Postives = 505/613 (82.38%), Query Frame = 1
Query: 1 GNAMGMNMISKGCEAAVREIQKRFKQARLVALSGNVCTDKKPSAQNWVEGRGKSVVAEAVLSAKTVSSVLKTTVDQMVECNISKNLVGSAMAGSIGGFNSHAANV----VAAVFLATGQDPAHTVEGSSCITLMEKVKPDEEGSDGGRPGDLRVTVTMPSLLVGTVGGGTGLPAQSACLRLMGCGQSVEDAGGDGXXXXXXXXXXXXXXXXXHDGAQMGSQKVGVAGDAASVPGHPSANGXXXXXXXXXXXXXXXXXXXSSIPGSIDEDTXXXXXXXXXXXXXXEQRTAIGLVAEAAAATSPLPGVIAAAVADEAAITPIARVGDNSVDAAAETPLPPAAXXXXXXXXXXXXXXXRSGXXGDSPGSSSPGNPREKGARRLACVIAATVMAGELSLLAALTSNDLVRAHMTLNRKKKGGAPGASAGAVSAGGGSVGTAFAXXXXXXXXXXXXTGTAPXATXXXXXXXXXXXX---------GGSTRATSPRAAGRGSAAPRVQQPAGESGTGG-GGIDAHAGGSGAGGSESGRLDVFPAAAPTDATDETESVESTSPDLQXXXXXXXXRSSGVTEVSPLPSSETWQNSGASASAADPPHQGAQVLMQMQMEGVP 1797
GNAMGMNMISKGCEAAVREIQKRFKQARLVALSGNVCTDKK SAQNWVEGRGKSVVAEAVLSAKTVSSVLKTTVD+MVECNISKNLVGSAMAGSIGGFNSHAANV +AVFLATGQDPAHTVEGSSCITLMEKVKP EEGS GGRPGDLRVTVTMPSLLVGTVGGGTGLPAQSACLRLMGCGQSVEDAGGDG XXXXXXXXXXXX DGAQ+GSQK GV GDA SVPGHPSA G XXXXXXXXXXXXXXX SIPGSIDEDT XXXXXXX EQ TAIGLVAEAAAA SPLPGVIAAAVADEAA TPIAR GD V A+TPLPPAA +SGXX PGSSS PREKGARRLACVIAATVMAGELSLLAALTSNDLVRAHM LNRKK GGAPGASAGAVSAG G AFA XXXXXXX X XXXXXXXXXXXX GGSTRA S R AG GS APRVQQPA ESG GG GGIDAHAGGSGA GSESGRL VFPAAAPT ATDE ES +STSPDLQXXXXXXXX S+GVTEV PLPSSET QNSG SASAAD PHQGAQ LMQMQMEG P
Sbjct: 119 GNAMGMNMISKGCEAAVREIQKRFKQARLVALSGNVCTDKKASAQNWVEGRGKSVVAEAVLSAKTVSSVLKTTVDKMVECNISKNLVGSAMAGSIGGFNSHAANVRLFLSSAVFLATGQDPAHTVEGSSCITLMEKVKPGEEGSGGGRPGDLRVTVTMPSLLVGTVGGGTGLPAQSACLRLMGCGQSVEDAGGDGGVXXXXXXXXXXXX----DGAQIGSQKAGVDGDAVSVPGHPSAKGENGXXXXXXXXXXXXXXX--SIPGSIDEDTGGNXXXXXXXDGSGEQPTAIGLVAEAAAAISPLPGVIAAAVADEAATTPIARAGDCPVGVVADTPLPPAATPGKGKGKAPGAGARKSGXXXXXPGSSSAA-PREKGARRLACVIAATVMAGELSLLAALTSNDLVRAHMALNRKK-GGAPGASAGAVSAGNFG-GNAFAPSPQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAVPAGGSTRAASTRGAGGGSVAPRVQQPAWESGAGGSGGIDAHAGGSGADGSESGRLGVFPAAAPTQATDEAESEDSTSPDLQXXXXXXXXXSNGVTEVPPLPSSETSQNSGVSASAADRPHQGAQALMQMQMEGAP 722
BLAST of mRNA_Ecto-sp13_S_contig14880.3716.1 vs. uniprot
Match: D8LK73_ECTSI (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK73_ECTSI) HSP 1 Score: 400 bits (1027), Expect = 1.550e-126 Identity = 315/550 (57.27%), Postives = 317/550 (57.64%), Query Frame = 1
Query: 1 GNAMGMNMISKGCEAAVREIQKRFKQARLVALSGNVCTDKKPSAQNWVEGRGKSVVAEAVLSAKTVSSVLKTTVDQMVECNISKNLVGSAMAGSIGGFNSHAANVVAAVFLATGQDPAHTVEGSSCITLMEKVKPDEEGSDGG-RPGDLRVTVTMPSLLVGTVGGGTGLPAQSACLRLMGCGQSVEDAGGDGXXXXXXXXXXXXXXXXXHDGAQMGSQKVGVAGDAASVPGHPSANGXXXXXXXXXXXXXXXXXXXSSIPGSIDEDTXXXXXXXXXXXXXXEQRTAIGLVAEAAAATSPLPGVIAAAVADEAAITPIARVGDNSVDAAAETPLPPAAXXXXXXXXXXXXXXXRSGXXGDSPGSSSPGNPREKGARRLACVIAATVMAGELSLLAALTSNDLVRAHMTLNRKKKGGAPGASAGAVSAGGGSVGTAFAXXXXXXXXXXXXTGTAPXATXXXXXXXXXXXXGGSTRATSPRAAGRGSAAP--RVQQPAGESGTGGG--GIDAHAGGSGAGGSESGRLDVFPAAAPTDATDETESVESTSPDLQ 1635
GNAMGMNMISKGCEAAVREIQKRFKQARLVALSGNVCTDKK SAQNWVEGRGKSVVAEAVLSAKTVSSVLKTTVDQMVECNISKNLVGSAMAGSIGGFNSHAANVVAAVFLATGQDPAHTVEGSSCITLMEKVKP EEGS GG RPGDLRVTVTMPSLL AA TP AR GD+SV AAAETPLPPAA XXXXXX XX PREKGARRLACVIAATVMAGELSLLAALTSNDLVRAHM LNRKK GGAPGASAGAV AG G AFA XXX X XXXXXXXXXXXX RVQQPAGESGTGG GIDAHAGGSGA GSESGRLDVFPAAAPT+ATDETES ESTSPDLQ
Sbjct: 326 GNAMGMNMISKGCEAAVREIQKRFKQARLVALSGNVCTDKKASAQNWVEGRGKSVVAEAVLSAKTVSSVLKTTVDQMVECNISKNLVGSAMAGSIGGFNSHAANVVAAVFLATGQDPAHTVEGSSCITLMEKVKPGEEGSGGGGRPGDLRVTVTMPSLL--------------------------------------------------------------------------------------------------------------------------------------------------------AATTPNARAGDSSVGAAAETPLPPAATPGKGKGKAXXXXXXXXXXXXXXXXXXXXXXPREKGARRLACVIAATVMAGELSLLAALTSNDLVRAHMALNRKK-GGAPGASAGAVGAGSVFFGAAFAPSPQAAPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVQQPAGESGTGGXXXGIDAHAGGSGADGSESGRLDVFPAAAPTEATDETESEESTSPDLQ 722
BLAST of mRNA_Ecto-sp13_S_contig14880.3716.1 vs. uniprot
Match: A0A3R7LV10_9TRYP (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Trypanosoma conorhini TaxID=83891 RepID=A0A3R7LV10_9TRYP) HSP 1 Score: 222 bits (565), Expect = 5.260e-62 Identity = 116/190 (61.05%), Postives = 139/190 (73.16%), Query Frame = 1
Query: 1 GNAMGMNMISKGCEAAVREIQKRFKQARLVALSGNVCTDKKPSAQNWVEGRGKSVVAEAVLSAKTVSSVLKTTVDQMVECNISKNLVGSAMAGSIGGFNSHAANVVAAVFLATGQDPAHTVEGSSCITLMEKVKPDEEGSDGGRPGDLRVTVTMPSLLVGTVGGGTGLPAQSACLRLMGCGQSVEDAGGD 570
G+AMGMNMI+KG + A+ +Q++F R++ALSGN CTDKKPSA NW+EGRGKSVVAEA + A V LK TVD +V N+ KNLVGSAMAGS+GGFN+ AAN VAA+FLATGQDPA VE S+C+T M KV DL +TVTMPS+ VGTVGGGTGL AQ CL LMGCG S ++ G+
Sbjct: 216 GDAMGMNMITKGVDRAMSLLQQQFPSMRVIALSGNYCTDKKPSAVNWIEGRGKSVVAEATVLADVVEETLKCTVDSLVSLNVDKNLVGSAMAGSVGGFNAQAANAVAAIFLATGQDPAQVVESSTCLTSMSKVG-----------NDLLITVTMPSIEVGTVGGGTGLVAQRGCLELMGCGGSSKETPGE 394
BLAST of mRNA_Ecto-sp13_S_contig14880.3716.1 vs. uniprot
Match: A0A067CTZ6_SAPPC (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CTZ6_SAPPC) HSP 1 Score: 219 bits (559), Expect = 1.420e-61 Identity = 111/180 (61.67%), Postives = 139/180 (77.22%), Query Frame = 1
Query: 1 GNAMGMNMISKGCEAAVREIQKRFKQARLVALSGNVCTDKKPSAQNWVEGRGKSVVAEAVLSAKTVSSVLKTTVDQMVECNISKNLVGSAMAGSIGGFNSHAANVVAAVFLATGQDPAHTVEGSSCITLMEKVKPDEEGSDGGRPGDLRVTVTMPSLLVGTVGGGTGLPAQSACLRLMGC 540
GNAMGMNM+SKG A + +Q+RF LVA+SGNVCTDKK +A NW++GRGKSVVA+AV+ A V+ +L TTVD++V+ N+ KNLVGSAMAG++GGFN+HAAN++ A+FLATGQDPA VE SSC+T++EK K GDL ++VTMPS+ VGTVGGGT L Q ACL LMGC
Sbjct: 175 GNAMGMNMVSKGTLAVLGHLQERFPDMELVAISGNVCTDKKSAAINWIDGRGKSVVADAVVKADVVARILHTTVDKLVDLNLQKNLVGSAMAGALGGFNAHAANILTAIFLATGQDPAQNVESSSCMTMLEKTK----------DGDLYISVTMPSIEVGTVGGGTHLGPQQACLGLMGC 344
BLAST of mRNA_Ecto-sp13_S_contig14880.3716.1 vs. uniprot
Match: A0A2G5B406_COERN (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5B406_COERN) HSP 1 Score: 220 bits (561), Expect = 6.640e-61 Identity = 112/180 (62.22%), Postives = 141/180 (78.33%), Query Frame = 1
Query: 1 GNAMGMNMISKGCEAAVREIQKRFKQARLVALSGNVCTDKKPSAQNWVEGRGKSVVAEAVLSAKTVSSVLKTTVDQMVECNISKNLVGSAMAGSIGGFNSHAANVVAAVFLATGQDPAHTVEGSSCITLMEKVKPDEEGSDGGRPGDLRVTVTMPSLLVGTVGGGTGLPAQSACLRLMGC 540
G+AMGMNMISKGCE A+R IQ+RF +VA+SGN CTDKKP+A NW++GRGKSVV+EA++ V SVLK++VD + N+SKNL+GSAMAG++GGFN+HAAN + AVFLATGQDPA VE S+CITLME P +G D LR++ +MPS+ VGTVGGGT LP Q+ACL ++GC
Sbjct: 234 GDAMGMNMISKGCEQALRLIQERFADCDVVAVSGNYCTDKKPAAINWIDGRGKSVVSEAIIPGAVVRSVLKSSVDDLCRLNVSKNLIGSAMAGALGGFNAHAANTLTAVFLATGQDPAQNVESSTCITLME---PANDGQD------LRISCSMPSIEVGTVGGGTVLPPQAACLDMLGC 404
BLAST of mRNA_Ecto-sp13_S_contig14880.3716.1 vs. uniprot
Match: UPI00072DE95A (3-hydroxy-3-methylglutaryl-coenzyme A reductase-like n=1 Tax=Poecilia mexicana TaxID=48701 RepID=UPI00072DE95A) HSP 1 Score: 217 bits (552), Expect = 9.750e-61 Identity = 110/179 (61.45%), Postives = 138/179 (77.09%), Query Frame = 1
Query: 1 GNAMGMNMISKGCEAAVREIQKRFKQARLVALSGNVCTDKKPSAQNWVEGRGKSVVAEAVLSAKTVSSVLKTTVDQMVECNISKNLVGSAMAGSIGGFNSHAANVVAAVFLATGQDPAHTVEGSSCITLMEKVKPDEEGSDGGRPGDLRVTVTMPSLLVGTVGGGTGLPAQSACLRLMG 537
G+AMGMNMISKG E A+ +Q+ F + ++VA+SGN CTDKKP+A NW+EGRGKS V EA +SAK V VLKTT + ++E NISKNLVGSAMAGSIGGFN+HAAN+VAA+++A GQDPA +V S+CITLME P + DL ++ TMPS+ VGTVGGGT LP Q ACL+++G
Sbjct: 163 GDAMGMNMISKGTEKALSRLQQHFPELQVVAVSGNYCTDKKPAAINWIEGRGKSAVCEATISAKVVQEVLKTTTEALIEVNISKNLVGSAMAGSIGGFNAHAANLVAAIYIACGQDPAQSVSSSNCITLMEPSGPTGK--------DLYISCTMPSIEVGTVGGGTNLPPQQACLKMLG 333
BLAST of mRNA_Ecto-sp13_S_contig14880.3716.1 vs. uniprot
Match: A0A7S1GAM2_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GAM2_9STRA) HSP 1 Score: 219 bits (558), Expect = 2.480e-60 Identity = 116/179 (64.80%), Postives = 141/179 (78.77%), Query Frame = 1
Query: 1 GNAMGMNMISKGCEAAVREIQKRFKQARLVALSGNVCTDKKPSAQNWVEGRGKSVVAEAVLSAKTVSSVLKTTVDQMVECNISKNLVGSAMAGSIGGFNSHAANVVAAVFLATGQDPAHTVEGSSCITLMEKVKPDEEGSDGGRPGDLRVTVTMPSLLVGTVGGGTGLPAQSACLRLMG 537
G+AMGMNMISKG AA+ + + F ARL++LSGN CTDKKPSA NW+EGRGK+V EAV+ A V +VLKT VD++VE N++KNL+GSA+AGSIGG+N+HAAN+V+AVFLATGQD A VE S+C+TLMEK PD G L +VTMPS+ VGTVGGGT LPAQSACLRL+G
Sbjct: 237 GDAMGMNMISKGVSAALDSLAEEFPNARLLSLSGNACTDKKPSAINWIEGRGKTVTCEAVIPADIVRTVLKTNVDKLVELNVAKNLIGSAVAGSIGGYNAHAANIVSAVFLATGQDVAQNVESSTCMTLMEK-DPDT--------GALIASVTMPSIEVGTVGGGTSLPAQSACLRLLG 406
BLAST of mRNA_Ecto-sp13_S_contig14880.3716.1 vs. uniprot
Match: A0A6I9NQ43_9TELE (3-hydroxy-3-methylglutaryl-coenzyme A reductase n=1 Tax=Notothenia coriiceps TaxID=8208 RepID=A0A6I9NQ43_9TELE) HSP 1 Score: 213 bits (542), Expect = 3.880e-60 Identity = 112/190 (58.95%), Postives = 139/190 (73.16%), Query Frame = 1
Query: 1 GNAMGMNMISKGCEAAVREIQKRFKQARLVALSGNVCTDKKPSAQNWVEGRGKSVVAEAVLSAKTVSSVLKTTVDQMVECNISKNLVGSAMAGSIGGFNSHAANVVAAVFLATGQDPAHTVEGSSCITLMEKVKPDEEGSDGGRPGDLRVTVTMPSLLVGTVGGGTGLPAQSACLRLMGCGQSVEDAGGD 570
G+AMGMNMISKG E A+ +Q+ F +++A+SGN CTDKKP+A NW+EGRGKS V EA + AK V VLKTT +VE NISKNLVGSAMAGSIGGFN+HA+N+VAA+++A GQDPA +V S+CITLME P E DL +T TMPS+ +GTVGGGT LP Q ACLR++G + D G+
Sbjct: 78 GDAMGMNMISKGTEQALSILQQHFPDVQVIAVSGNFCTDKKPAAINWIEGRGKSAVCEATIPAKVVREVLKTTTAALVEVNISKNLVGSAMAGSIGGFNAHASNLVAAIYIACGQDPAQSVGSSNCITLMEASGPTGE--------DLYITCTMPSIELGTVGGGTSLPPQQACLRMLGVQGASLDCPGE 259
BLAST of mRNA_Ecto-sp13_S_contig14880.3716.1 vs. uniprot
Match: L8GQW8_ACACA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GQW8_ACACA) HSP 1 Score: 216 bits (551), Expect = 4.570e-60 Identity = 112/178 (62.92%), Postives = 137/178 (76.97%), Query Frame = 1
Query: 1 GNAMGMNMISKGCEAAVREIQKRFKQARLVALSGNVCTDKKPSAQNWVEGRGKSVVAEAVLSAKTVSSVLKTTVDQMVECNISKNLVGSAMAGSIGGFNSHAANVVAAVFLATGQDPAHTVEGSSCITLMEKVKPDEEGSDGGRPGDLRVTVTMPSLLVGTVGGGTGLPAQSACLRLM 534
G+AMGMNM+SKG E A+ IQ+ F +V+LSGN CTDKKPS+ NW+EGRGKSVV EA++ V SVLKTTV MVE N KNL+GSAMAGSIGGFN+HAAN+V A+F+ATGQDPA VE S+C+T+ME P ++G+D L ++ TMPS+ VGTVGGGT LPAQSACL L+
Sbjct: 208 GDAMGMNMLSKGTEKALAFIQQAFPDMLIVSLSGNYCTDKKPSSMNWIEGRGKSVVCEAIIKGDVVESVLKTTVRAMVELNTQKNLIGSAMAGSIGGFNAHAANIVTAIFIATGQDPAQNVESSNCLTIME---PTDDGND------LYISCTMPSIEVGTVGGGTHLPAQSACLDLL 376
BLAST of mRNA_Ecto-sp13_S_contig14880.3716.1 vs. uniprot
Match: A0A7J6BVF0_9TELE (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Onychostoma macrolepis TaxID=369639 RepID=A0A7J6BVF0_9TELE) HSP 1 Score: 216 bits (550), Expect = 5.180e-60 Identity = 112/179 (62.57%), Postives = 140/179 (78.21%), Query Frame = 1
Query: 1 GNAMGMNMISKGCEAAVREIQKRFKQARLVALSGNVCTDKKPSAQNWVEGRGKSVVAEAVLSAKTVSSVLKTTVDQMVECNISKNLVGSAMAGSIGGFNSHAANVVAAVFLATGQDPAHTVEGSSCITLMEKVKPDEEGSDGGRPGDLRVTVTMPSLLVGTVGGGTGLPAQSACLRLMG 537
G+AMGMNM+SKG E A+ +Q+R+ R++A+SGN CTDKKP+A NW+ GRGKS V EAV+ A+ + VLK++ +VE NISKNLVGSAMAGSIGGFN+HAAN+VAA+++A GQDPA TV S+CITLME V G DG DL V+ TMPSL +GTVGGGTGLPAQ ACL+++G
Sbjct: 185 GDAMGMNMLSKGTEQALSRLQERYPDMRMLAVSGNYCTDKKPAAVNWIHGRGKSTVCEAVVPARVIKEVLKSSTAALVELNISKNLVGSAMAGSIGGFNAHAANIVAAIYIACGQDPAQTVGSSNCITLMECV-----GMDGE---DLYVSCTMPSLELGTVGGGTGLPAQHACLQMLG 355 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14880.3716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14880.3716.1 >prot_Ecto-sp13_S_contig14880.3716.1 ID=prot_Ecto-sp13_S_contig14880.3716.1|Name=mRNA_Ecto-sp13_S_contig14880.3716.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=650bp MGMNMISKGCEAAVREIQKRFKQARLVALSGNVCTDKKPSAQNWVEGRGKback to top mRNA from alignment at Ecto-sp13_S_contig14880:1149..4088- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14880.3716.1 ID=mRNA_Ecto-sp13_S_contig14880.3716.1|Name=mRNA_Ecto-sp13_S_contig14880.3716.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2940bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14880:1149..4088- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14880:1149..4088- >mRNA_Ecto-sp13_S_contig14880.3716.1 ID=mRNA_Ecto-sp13_S_contig14880.3716.1|Name=mRNA_Ecto-sp13_S_contig14880.3716.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1950bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14880:1149..4088- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |