mRNA_Ecto-sp13_S_contig14877.3712.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14877.3712.1 vs. uniprot
Match: A0A6H5JIX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIX2_9PHAE) HSP 1 Score: 1003 bits (2594), Expect = 0.000e+0 Identity = 608/727 (83.63%), Postives = 630/727 (86.66%), Query Frame = 1
Query: 46 SPPLAGRVDSRRRESAPAVSPGVRSVLGASDAGGHVTPGRNKAKAPASEQRTGILQGTPPRRRAYSSPGLYSPGKGLRSPGKMRQERLGGRDGVGEETEKVVEGDTSPGSSPEPSSPTQQQQENPVGDQEARKSDNDGCSPVASGDGNQQGGGALQSSSPRVVDARPTNSKPMGGVGSPGVSSPTDQHQQPQDASCVPISGDDSPRKAVSSRCSSPCTVVDAQATESPATGTVGSPGASSSHEPRSHQXXXXXXXXXXXXXXXXXXXXXXXXX--VGQGGEQEQEAPQSCNDTACSPVARAFASPVHDGEPACTTSRLVAASTPPVADWSASGTAVDDSGRGVDGCGGSSCGDVPAAAAAAPVSASDNTGEAQAPPKENEQNLPEASQAPPMAGEGMRKEEKXXXXXXXXXXXXXXKGEDELPETFPCSPNIAAGFVAGRRKRRAVSGVPVVTAAEATAALSPVSAERRRASSGSKALESSEEQESGLGESSGAEGSGDESGSSWETCSXXXXXXXXXXXVAEGEEGEGWGRLSYLDEIDEHPYGGVVVIDPDLVRSGGSSNGGGSARSSLPRSSFDGEARSGGRRSWTASPPTAEVSTQTTQGEEGVAHVLVQAGDGKLLSEAELREEYTQRELRERLEMMNHDLLAEVFHREIVKQEEAQKRRKQQEAHEAEILALRGELHAVQMSHNNEKIKMRWEHADELARVEAEGGDVVGMRQELEEERKL 2220
SPPLAGRVDSRRRESAPA SPGVRSVLGASDAGGH+TPGR+ AKAPA EQRTGIL+GTP RRRA SSPG+Y PGK MRQERLGGRDGVGEETEKVVEG TSPGS PEPSSPTQQQQE PVGD+E RKSDNDGCSPVASGDGNQQGGG LQSSSPRVVDARPTNS+PMGGVG P VSSPTDQHQQ +DASCVP++GD+SPRKAV SRCSSPCT VDAQATESPATGTV SPGAS+SHEPRSHQXXXXXXXXXXXXXXXXXXXXXXXXX VGQGGEQEQEAP+SCN ACSP+AR FASPVHDG PACTTSRLVAAS P +A SA TAVDDSGRG DG GGSSC D APVSASDN+ ENEQNL EASQ P M GEGM+K EK KGE+EL ETFPCS N AAGFVAGRRKRRAVSGVPVVT A ATAALSPVSAERRRASSGSK+ ESS EQE GLGESSGAE GDESGSSWETCS XXXXXXX AEGEEGEGWGRLSYLDEIDEHPYGGVVVIDPDLVRSGGSS ARSS+PRSSFD EARSGGRRSWTA PPTA++STQTTQ EEGVAH+LVQAGDGKLLSEAELREEYTQRELRERLEMMNHDLLAEVFHREIVKQEEAQKRRKQQEAHEAEILALR ELHAVQMSHNNEKIKMRWEHADELARVEAEGGDVVGMRQELEEERKL
Sbjct: 878 SPPLAGRVDSRRRESAPAASPGVRSVLGASDAGGHLTPGRDIAKAPAFEQRTGILEGTPTRRRACSSPGMYRPGK-------MRQERLGGRDGVGEETEKVVEGATSPGSLPEPSSPTQQQQERPVGDKEVRKSDNDGCSPVASGDGNQQGGGVLQSSSPRVVDARPTNSRPMGGVGLPRVSSPTDQHQQQEDASCVPMTGDESPRKAVMSRCSSPCTAVDAQATESPATGTVESPGASASHEPRSHQXXXXXXXXXXXXXXXXXXXXXXXXXXXVGQGGEQEQEAPRSCNGAACSPLARTFASPVHDGVPACTTSRLVAASPPRIAGCSACETAVDDSGRGADGRGGSSCDDXXXXXXXAPVSASDNSXXXXXXXXENEQNLSEASQTPLMTGEGMKKGEKEPEAVQAPPKADEGKGEEELHETFPCSTNFAAGFVAGRRKRRAVSGVPVVTVAAATAALSPVSAERRRASSGSKSPESSLEQEGGLGESSGAESPGDESGSSWETCSSXXXXXXXGVGGAEGEEGEGWGRLSYLDEIDEHPYGGVVVIDPDLVRSGGSSXXXXXARSSIPRSSFDDEARSGGRRSWTACPPTADMSTQTTQAEEGVAHILVQAGDGKLLSEAELREEYTQRELRERLEMMNHDLLAEVFHREIVKQEEAQKRRKQQEAHEAEILALRNELHAVQMSHNNEKIKMRWEHADELARVEAEGGDVVGMRQELEEERKL 1597
BLAST of mRNA_Ecto-sp13_S_contig14877.3712.1 vs. uniprot
Match: D7FZK0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZK0_ECTSI) HSP 1 Score: 543 bits (1400), Expect = 4.350e-175 Identity = 395/727 (54.33%), Postives = 405/727 (55.71%), Query Frame = 1
Query: 46 SPPLAGRVDSRRRESAPAVSPGVRSVLGASDAGGHVTPGRNKAKAPASEQRTGILQGTPPRRRAYSSPGLYSPGKGLRSPGKMRQERLGGRDGVGEETEKVVEGDTSPGSSPEPSSPTQQQQENPVGDQEARKSDNDGCSPVASGDGNQQGGGALQSSSPRVVDARPTNSKPMGGVGSPGVSSPTDQHQQPQDASCVPISGDDSPRKAVSSRCSSPCTVVDAQATESPATGTVGSPGASSSHEPRSHQXXXXXXXXXXXXXXXXXXXXXXXXXVGQGGEQEQEAPQSCNDTACSPVARAFASPVHDGEPACTTSRLVAASTPPVADWSASGTAVDDSGRGVDGCGGSSCGDVPAAAAAAPVSASDNTGEAQAPPKENEQNLPEASQAPPMAGEGMRKEEKXXXXXXXXXXXXXXKGEDELPETFPCSPNIAAGFVAGRRKRRAVSGVPVVTAAEATAALSPVSAERRRASSGSKALESSEEQESGLGESSGAEGSGDESGSSWETCSXXXXXXXXXXXVAE--GEEGEGWGRLSYLDEIDEHPYGGVVVIDPDLVRSGGSSNGGGSARSSLPRSSFDGEARSGGRRSWTASPPTAEVSTQTTQGEEGVAHVLVQAGDGKLLSEAELREEYTQRELRERLEMMNHDLLAEVFHREIVKQEEAQKRRKQQEAHEAEILALRGELHAVQMSHNNEKIKMRWEHADELARVEAEGGDVVGMRQELEEERKL 2220
SPPLAGRVDSRRRESAPAVSPGVRSVLGASDAGGHVTPGR+KAKAPA EQRTGIL+GTP RRRAYSSPGLYSPGKGLRSPGKMRQERLGG DGVGEE EKVVE +TSPGS PEPSSPTQQQ E PVGD+EA QAPPKENEQNLPE SQ PPMAGEG++KEE XXXXXXXXXXXXXX ELPETFPCSPN AAGFVAGRRKRRAVSGVPVV XXXXXXXXXX V E GEEGEGWGRLSYLDEIDEHPYGGVVVIDPDLVRSGGSSNG SARSS+PRSS D EARSGGRRSWTASPPTAE+STQTTQGEEGVAHVLVQAGDGKLLSEAELREEYTQRELRERLEMMNHDLLAEVFHREIVKQEEAQKRRKQ EAHEAE+LALR ELHAVQMSHNNEKIKMRWEHADELARVEAEGGDVVGMRQELEEER+L
Sbjct: 613 SPPLAGRVDSRRRESAPAVSPGVRSVLGASDAGGHVTPGRDKAKAPAFEQRTGILEGTPTRRRAYSSPGLYSPGKGLRSPGKMRQERLGGGDGVGEEAEKVVERETSPGSLPEPSSPTQQQPERPVGDKEA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QAPPKENEQNLPEVSQTPPMAGEGVKKEEXXXXXXXXXXXXXXXXXXXELPETFPCSPNFAAGFVAGRRKRRAVSGVPVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVVEEEGEEGEGWGRLSYLDEIDEHPYGGVVVIDPDLVRSGGSSNGXXSARSSIPRSSVDDEARSGGRRSWTASPPTAEMSTQTTQGEEGVAHVLVQAGDGKLLSEAELREEYTQRELRERLEMMNHDLLAEVFHREIVKQEEAQKRRKQLEAHEAEVLALRDELHAVQMSHNNEKIKMRWEHADELARVEAEGGDVVGMRQELEEERRL 1100
BLAST of mRNA_Ecto-sp13_S_contig14877.3712.1 vs. uniprot
Match: D7FNX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX0_ECTSI) HSP 1 Score: 173 bits (439), Expect = 3.210e-47 Identity = 93/103 (90.29%), Postives = 96/103 (93.20%), Query Frame = 1
Query: 1657 DEHPYGGVVVIDPDLVRSGGSSNGGGSARSSLPRSSFDGEARSGGRRSWTASPPTAEVSTQTTQGEEGVAHVLVQAGDGKLLSEAELREEYTQRELRERLEMM 1965
DEHPYGGVVVIDPDLVRSGGSSN SARSS+PRSS D EARSGGRRSWTASPPTAE+STQTTQGEEGVAHVLVQAGDGKLLSEAELREEYTQRELR+R MM
Sbjct: 6 DEHPYGGVVVIDPDLVRSGGSSNXXXSARSSIPRSSVDDEARSGGRRSWTASPPTAEMSTQTTQGEEGVAHVLVQAGDGKLLSEAELREEYTQRELRQRSNMM 108 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14877.3712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14877.3712.1 >prot_Ecto-sp13_S_contig14877.3712.1 ID=prot_Ecto-sp13_S_contig14877.3712.1|Name=mRNA_Ecto-sp13_S_contig14877.3712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=741bp PRRTGLTPPGYRSRTSPPLAGRVDSRRRESAPAVSPGVRSVLGASDAGGHback to top mRNA from alignment at Ecto-sp13_S_contig14877:573..4310- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14877.3712.1 ID=mRNA_Ecto-sp13_S_contig14877.3712.1|Name=mRNA_Ecto-sp13_S_contig14877.3712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3738bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14877:573..4310- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14877:573..4310- >mRNA_Ecto-sp13_S_contig14877.3712.1 ID=mRNA_Ecto-sp13_S_contig14877.3712.1|Name=mRNA_Ecto-sp13_S_contig14877.3712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2223bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14877:573..4310- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |