mRNA_Ecto-sp13_S_contig14874.3709.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14874.3709.1
Unique NamemRNA_Ecto-sp13_S_contig14874.3709.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14874.3709.1 vs. uniprot
Match: D8LR13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR13_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 2.850e-30
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:  103 MSTSWVARSAGSLLGRQSVKVKGDSVQKMNQAMDEIERKERMMRVPEVMERHRYHEKGYNRVRR 294
            MSTSWVARSAGSLLGR SVKVKGDSVQK+NQAMDEIER+ERM+RVPEVMERHRYHEKGYNR RR
Sbjct:    1 MSTSWVARSAGSLLGRHSVKVKGDSVQKVNQAMDEIERRERMLRVPEVMERHRYHEKGYNRTRR 64
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14874.3709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LR13_ECTSI2.850e-3092.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14874contigEcto-sp13_S_contig14874:22..1291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size324
Hectar predicted targeting categorymitochondrion
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_002400.1
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462793.2554293-CDS-Ecto-sp13_S_contig14874:21..1831681462793.2554293-CDS-Ecto-sp13_S_contig14874:21..183Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14874 22..183 -
1681462793.2722657-CDS-Ecto-sp13_S_contig14874:1129..12911681462793.2722657-CDS-Ecto-sp13_S_contig14874:1129..1291Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14874 1130..1291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14874.3709.1prot_Ecto-sp13_S_contig14874.3709.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14874 22..1291 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14874.3709.1

>prot_Ecto-sp13_S_contig14874.3709.1 ID=prot_Ecto-sp13_S_contig14874.3709.1|Name=mRNA_Ecto-sp13_S_contig14874.3709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
MAHLARNVLQRGASSSGMPLTTSIPASGANVRRSMSTSWVARSAGSLLGR
QSVKVKGDSVQKMNQAMDEIERKERMMRVPEVMERHRYHEKGYNRVRRLR
KSVFRVS*
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mRNA from alignment at Ecto-sp13_S_contig14874:22..1291-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14874.3709.1 ID=mRNA_Ecto-sp13_S_contig14874.3709.1|Name=mRNA_Ecto-sp13_S_contig14874.3709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14874:22..1291- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCACCTGGCGCGAAATGTGCTCCAGCGAGGCGCTTCTTCCAGCGG
GATGCCTCTTACCACGTCCATTCCGGCAAGCGGGGCCAACGTCAGGAGAT
CAATGTCGACGTCGTGGGTGGCCAGGTCGGCAGGTTCCCTGCTCGGAAGG
CAATCGGTCAAGGTGCGCGTTGCTCATGGCGTGGGGGTGGATTGTGGAGA
AACATGAGGCGTTGGATAGCCGTGGCATTTGTTGGCTTCACGGCAAGAAA
TACTCGAGCCCTATGGCATATTCATGACGCCTTTCAATTGGTTGGCTGGA
TCATCGAATCGAAAGAGTCCGGCAGGCCTGCCGACGCTTCGTTACTGCTG
CGATACATTCCACTGCAAACCCCACCTCAGTAACGCCAACAAACCGATTT
TGTCTTGCACCGTGCATATTTTGCCGGTGTGGCTGGTTTCATGGCTTTGA
CGCGGGTTAGGGAATGGAGTTGCACGACGAAAGCCGACGCTTGGAACCAG
CCGTGTTGCTGGCTCTGTCTTGTGCATAACCCATCCGACATCGATGCGAC
TGCTTAAGCAGGGTTCTCATTCACTATTGGTTAACACGTTGGGGAACGAA
TGGGCGTGTATCACAAGGTGTCAACCTCTGTCGCGCAGAATAAAAACTCT
TATGTTTTGCAACGATGGAGATGTGCCCACTTGCTGCAGGGGCGTGGGTA
GGGAGGTGTCACGTTATGTGCTTACCTGCGGACCCATCTCTCCTGTGTCG
AAGAATCGGGGAACGCGTTCGGCTAGGGTTCGCAAGCGAACACACTTTAC
AGGTGCTACGGTAGCATAACAGAACTGGAGTTGTAGAGTTTGTTTTAGGT
GGCGGCACCTTGGTCTGGGATGCACCCCGATGTTTTTCCTCTTTCCCGCA
TACGCGATGCCGAGAGAAGTCAGCCGTTCTTGCTCGGGTCCCTTTCAACC
CAACGGACTGGCTTACCCAACGGACAGGCTTACCCAACGGACTGGCCTTT
TCGGTGTGTGAACATGCGGCTTTTTTCCTCCTGTCGAGGCAGCGGGTGCG
GTACAATTGGTTCGGCCCTACTCTGACCGTCTTTGCAAAAATCATCGACA
ACAAACAGGTGAAGGGAGACAGCGTTCAGAAGATGAACCAGGCAATGGAC
GAGATCGAGCGGAAAGAAAGGATGATGCGCGTCCCCGAGGTCATGGAGCG
ACACCGGTACCACGAGAAGGGATACAACAGGGTGAGACGGCTTCGAAAGT
CTGTCTTTCGTGTCTCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14874:22..1291-

>mRNA_Ecto-sp13_S_contig14874.3709.1 ID=mRNA_Ecto-sp13_S_contig14874.3709.1|Name=mRNA_Ecto-sp13_S_contig14874.3709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14874:22..1291- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCACCTGGCGCGAAATGTGCTCCAGCGAGGCGCTTCTTCCAGCGG
GATGCCTCTTACCACGTCCATTCCGGCAAGCGGGGCCAACGTCAGGAGAT
CAATGTCGACGTCGTGGGTGGCCAGGTCGGCAGGTTCCCTGCTCGGAAGG
CAATCGGTCAAGGTGAAGGGAGACAGCGTTCAGAAGATGAACCAGGCAAT
GGACGAGATCGAGCGGAAAGAAAGGATGATGCGCGTCCCCGAGGTCATGG
AGCGACACCGGTACCACGAGAAGGGATACAACAGGGTGAGACGGCTTCGA
AAGTCTGTCTTTCGTGTCTCGTGA
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